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Relevance to Autism

Rahimi et al., 2022 clinically described a cohort of 12 unrelated individuals with variants in the ATP2B1 gene and an overlapping phenotype of mild to moderate developmental delay/intellectual disability; five of these individuals were diagnosed with autism spectrum disorder. Additional functional characterization of the nine ATP2B1 missense variants identified in affected individuals in this report by Ca2+ imaging in transfected HEK293 cells showed that all variants led to a signficant decrease in Ca2+ export capacity compared to wild-type, demonstrating their pathogencity.

Molecular Function

The protein encoded by this gene belongs to the family of P-type primary ion transport ATPases characterized by the formation of an aspartyl phosphate intermediate during the reaction cycle. These enzymes remove bivalent calcium ions from eukaryotic cells against very large concentration gradients and play a critical role in intracellular calcium homeostasis. The mammalian plasma membrane calcium ATPase isoforms are encoded by at least four separate genes and the diversity of these enzymes is further increased by alternative splicing of transcripts. The expression of different isoforms and splice variants is regulated in a developmental, tissue- and cell type-specific manner, suggesting that these pumps are functionally adapted to the physiological needs of particular cells and tissues. This gene encodes the plasma membrane calcium ATPase isoform 1.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
De novo variants in ATP2B1 lead to neurodevelopmental delay
DD
ASD, ID, epilepsy/seizures
Support
Integrating de novo and inherited variants in 42
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1313R001 
 missense_variant 
 c.716A>G 
 p.Asp239Gly 
 De novo 
  
 Simplex 
 GEN1313R002 
 missense_variant 
 c.791C>T 
 p.Thr264Ile 
 De novo 
  
 Simplex 
 GEN1313R003 
 missense_variant 
 c.1274C>A 
 p.Thr425Lys 
 De novo 
  
 Simplex 
 GEN1313R004 
 missense_variant 
 c.1376A>G 
 p.His459Arg 
 De novo 
  
 Simplex 
 GEN1313R005 
 missense_variant 
 c.2288G>C 
 p.Arg763Pro 
 De novo 
  
 Simplex 
 GEN1313R006 
 missense_variant 
 c.2365C>T 
 p.Arg789Cys 
 De novo 
  
 Simplex 
 GEN1313R007 
 missense_variant 
 c.2470G>A 
 p.Glu824Lys 
 De novo 
  
 Simplex 
 GEN1313R008 
 missense_variant 
 c.2570A>G 
 p.Gln857Arg 
 De novo 
  
 Simplex 
 GEN1313R009 
 missense_variant 
 c.2972G>A 
 p.Arg991Gln 
 Unknown 
 Not maternal 
  
 GEN1313R010 
 stop_gained 
 c.2632C>T 
 p.Gln878Ter 
 De novo 
  
 Simplex 
 GEN1313R011 
 stop_gained 
 c.458G>A 
 p.Trp153Ter 
 Unknown 
  
  
 GEN1313R012 
 stop_gained 
 c.1789C>T 
 p.Arg597Ter 
 Unknown 
  
 Unknown 
 GEN1313R013 
 missense_variant 
 c.487G>A 
 p.Val163Ile 
 De novo 
  
  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
12
Duplication
 1
 
12
Deletion
 2
 
12
Deletion
 1
 

No Animal Model Data Available

 

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