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Relevance to Autism

Two de novo variants in the ATP1A1 gene (one loss-of-function, one damaging missense) were identified in ASD probands in whole-exome sequencing studies (De Rubeis et al., 2014; Iossifov et al., 2014). De novo missense variants in the ATP1A1 gene that resulted in loss of Na+,K+-ATPase function and abnormal cation permeabilities were identified in three unrelated individuals presenting with generalized seizures in infancy, severe hypomagnesemia, renal magnesium wasting, and developmental delay/intellectual disability; one of these three individuals was diagnosed with severe autism, while another was suspected of having autism spectrum disorder (Schlingmann et al., 2018).

Molecular Function

The protein encoded by this gene belongs to the family of P-type cation transport ATPases, and to the subfamily of Na+/K+ -ATPases. Na+/K+ -ATPase is an integral membrane protein responsible for establishing and maintaining the electrochemical gradients of Na and K ions across the plasma membrane. These gradients are essential for osmoregulation, for sodium-coupled transport of a variety of organic and inorganic molecules, and for electrical excitability of nerve and muscle.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Synaptic, transcriptional and chromatin genes disrupted in autism.
ASD
Support
Excess of de novo variants in genes involved in chromatin remodelling in patients with marfanoid habitus and intellectual disability
ID
Marfanoid habitus
Support
De Novo Damaging DNA Coding Mutations Are Associated With Obsessive-Compulsive Disorder and Overlap With Tourette's Disorder and Autism.
OCD
Support
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Mutational Landscape of Autism Spectrum Disorder Brain Tissue
ASD
Support
High prevalence of multilocus pathogenic variation in neurodevelopmental disorders in the Turkish population
DD, ID
Recent Recommendation
Germline De Novo Mutations in ATP1A1 Cause Renal Hypomagnesemia, Refractory Seizures, and Intellectual Disability.
DD, ID, epilepsy/seizures
ASD or autistic features

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1046R001 
 missense_variant 
 c.2707G>A 
 p.Gly903Arg 
 De novo 
  
  
 GEN1046R002 
 splice_site_variant 
 c.12+719G>A 
  
 De novo 
  
 Simplex 
 GEN1046R003 
 missense_variant 
 c.905T>G 
 p.Leu302Arg 
 De novo 
  
 Simplex 
 GEN1046R004 
 missense_variant 
 c.907G>C 
 p.Gly303Arg 
 De novo 
  
 Simplex 
 GEN1046R005 
 missense_variant 
 c.2576T>G 
 p.Met859Arg 
 De novo 
  
 Simplex 
 GEN1046R006 
 missense_variant 
 c.1166C>G 
 p.Ala389Gly 
 De novo 
  
 Simplex 
 GEN1046R007 
 missense_variant 
 c.2021C>G 
 p.Thr674Ser 
 De novo 
  
 Multiplex 
 GEN1046R008 
 missense_variant 
 c.998C>G 
 p.Pro333Arg 
 De novo 
  
 Simplex 
 GEN1046R009 
 missense_variant 
 c.3007G>A 
 p.Glu1003Lys 
 De novo 
  
 Multiplex 
 GEN1046R010 
 missense_variant 
 c.1321C>G 
 p.Pro441Ala 
 Unknown 
  
  
 GEN1046R011 
 synonymous_variant 
 c.390G>A 
 p.Leu130%3D 
 De novo 
  
  
 GEN1046R012 
 synonymous_variant 
 c.1497G>A 
 p.Ser499%3D 
 De novo 
  
  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
1
Deletion-Duplication
 1
 
1
Duplication
 1
 
1
Duplication
 1
 

No Animal Model Data Available

 

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