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Relevance to Autism

Levine et al., 2026 described eighteen individuals from twelve unrelated families with biallelic, ultra-rare, predicted damaging variants in ASTN1 and one individual with heterozygous variants in both ASTN1 and ASTN2 presenting with a variable neurodevelopmental disorder characterized by mild to profound developmental delay or intellectual disability, autism or autistic features, ADHD, epilepsy, dysmorphic facial features, hypotonia, spasticity, ataxia, and structural brain abnormalities. A homozygous missense variant in the ASTN1 gene was previously identified in an ASD proband born to consanguineous Middle Eastern parents in Tuncay et al., 2022, while additional de novo heterozygous variants in the ASTN1 gene, including a de novo loss-of-function variant and several de novo missense variants, have been reported in ASD probands from the iHART cohort, the SPARK cohort, and a Chinese ASD cohort (Ruzzo et al., 2019; Zhou et al., 2022; Yuan et al., 2023).

Molecular Function

Astrotactin is a neuronal adhesion molecule required for glial-guided migration of young postmitotic neuroblasts in cortical regions of developing brain, including cerebrum, hippocampus, cerebellum, and olfactory bulb.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Bi-allelic variants in neuronal adhesion molecule astrotactin 1 gene ASTN1 cause diverse neurodevelopmental disorders
DD/ID, epilepsy/seizures
ASD or autistic features, ADHD
Support
Inherited and De Novo Genetic Risk for Autism Impacts Shared Networks.
ASD
Support
Homozygous ASTN1 Nonsense Variant Linked to Epileptic Encephalopathy: A Detailed Report With Unique Clinical Presentation
DD, epilepsy/seizures
Support
Integrating de novo and inherited variants in 42
ASD
Support
Analysis of recent shared ancestry in a familial cohort identifies coding and noncoding autism spectrum disorder variants
ASD
ADHD, DD, ID

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1532R001a 
 splice_site_variant 
 c.1523+1G>T 
  
 Familial 
 Both parents 
 Simplex 
 GEN1532R002a 
 stop_gained 
 c.1132C>T 
 p.Arg378Ter 
 Familial 
 Both parents 
 Multiplex 
 GEN1532R003a 
 splice_site_variant 
 c.1736+5G>A 
  
 Familial 
 Both parents 
 Simplex 
 GEN1532R004a 
 intron_variant 
 c.1599-14G>A 
  
 Unknown 
  
 Simplex 
 GEN1532R005a 
 splice_site_variant 
 c.1270+1G>A 
  
 Unknown 
  
 Simplex 
 GEN1532R006a 
 frameshift_variant 
 c.838_839delGA 
 p.Glu280LysfsTer11 
 Unknown 
  
 Simplex 
 GEN1532R006b 
 frameshift_variant 
 c.3125delAinsGACCACAAGTG 
 p.Glu1042GlyfsTer28 
 Unknown 
  
 Simplex 
 GEN1532R007 
 missense_variant 
 c.2773A>G 
 p.Met925Val 
 Familial 
 Paternal 
 Simplex 
 GEN1532R008a 
 missense_variant 
 c.3283A>C 
 p.Met1095Leu 
 Familial 
 Paternal 
 Simplex 
 GEN1532R008b 
 missense_variant 
 c.2770C>T 
 p.His924Tyr 
 Familial 
 Maternal 
 Simplex 
 GEN1532R009a 
 missense_variant 
 c.2224G>C 
 p.Gly742Arg 
 Familial 
 Both parents 
 Multiplex 
 GEN1532R010a 
 frameshift_variant 
 c.3159_3160del 
 p.Gln1053HisfsTer13 
 Familial 
 Both parents 
 Multiplex 
 GEN1532R011a 
 stop_gained 
 c.3334C>T 
 p.Arg1112Ter 
 Familial 
 Both parents 
 Extended multiplex 
 GEN1532R012a 
 stop_gained 
 c.1549C>T 
 p.Arg517Ter 
 Familial 
 Both parents 
 Simplex 
 GEN1532R013a 
 missense_variant 
 c.3283A>C 
 p.Met1095Leu 
 Familial 
 Both parents 
 Simplex 
 GEN1532R014 
 missense_variant 
 c.1446C>G 
 p.Cys482Trp 
 De novo 
  
 Multiplex 
 GEN1532R015 
 missense_variant 
 c.3299C>T 
 p.Pro1100Leu 
 De novo 
  
 Unknown 
 GEN1532R016 
 synonymous_variant 
 c.1245T>C 
 p.His415= 
 De novo 
  
 Simplex 
 GEN1532R017 
 missense_variant 
 c.2773A>G 
 p.Met925Val 
 De novo 
  
 Multiplex 
 GEN1532R018 
 frameshift_variant 
 c.177del 
 p.Ser60ArgfsTer90 
 De novo 
  
  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
1
Duplication
 50
 
1
Duplication
 1
 
1
Deletion
 3
 
1
Deletion
 2
 
1
Duplication
 1
 
1
Deletion
 3
 
1
Deletion-Duplication
 10
 

No Animal Model Data Available

No PIN Data Available
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