Summary Statistics:
ASD Reports: 22
Recent Reports: 2
Annotated variants: 96
Associated CNVs: 4
Evidence score: 4
Gene Score: 4S
Relevance to Autism
A de novo missense variant that was predicted to be damaging was observed in the ARID2 gene in an ASD proband from the Simons Simplex Collection in Iossifov et al., 2014, while a de novo splice-site variant in this gene was identified in an ASD proband from the ASPIRE cohort in Callaghan et al., 2019. Heterozygous variants in the ARID2 gene are also associated with a form of Coffin-Siris syndrome (Coffin-Siris syndrome 6; OMIM 617808); in addition to intellectual disability and dysmorphic features, individuals with this syndrome frequently present with behavioral abnormalities such as ADHD, tics, and autistic behavior such as routine-driven and/or rigid behavior and hand-flapping (Shang et al., 2015; Branswig et al., 2017; Van Paemel et al., 2017; Gazdagh et al., 2019).
Molecular Function
This gene encodes a member of the AT-rich interactive domain (ARID)-containing family of DNA-binding proteins. Members of the ARID family have roles in embryonic patterning, cell lineage gene regulation, cell cycle control, transcriptional regulation and chromatin structure modification. This protein functions as a subunit of the polybromo- and BRG1-associated factor or PBAF (SWI/SNF-B) chromatin remodeling complex which facilitates ligand-dependent transcriptional activation by nuclear receptors.
References
Primary
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
Mutations in ARID2 are associated with intellectual disabilities.
Coffin-Siris syndrome 6
DD, ID, ADHD
Support
Large-scale targeted sequencing identifies risk genes for neurodevelopmental disorders
ASD, DD
Support
ID
Epilepsy/seizures
Support
New insights into neurodevelopmental disorders by whole genome sequencing of 100 families from Italy
ASD, ADHD, SLD
Support
A recurrent PJA1 variant in trigonocephaly and neurodevelopmental disorders
ID, epilepsy/seizures
Support
Next-generation phenotyping integrated in a national framework for patients with ultrarare disorders improves genetic diagnostics and yields new molecular findings
DD
ASD, epilepsy/seizures
Support
Extending the clinical and genetic spectrum of ARID2 related intellectual disability. A case series of 7 patients.
Coffin-Siris syndrome 6
Support
Rare Pathogenic Variants Identified in Whole Exome Sequencing of Monozygotic Twins With Autism Spectrum Disorder
ASD
Support
Confirmation of an ARID2 defect in SWI/SNF-related intellectual disability.
Coffin-Siris syndrome 6
Support
Integrating de novo and inherited variants in 42
ASD
Support
The impact of inversions across 33,924 families with rare disease from a national genome sequencing project
DD, ID
Support
Prevalence and architecture of de novo mutations in developmental disorders
Developmental disorders
Support
Clinical Targeted Panel Sequencing Analysis in Clinical Evaluation of Children with Autism Spectrum Disorder in China
ASD
Support
ARID2, a milder cause of Coffin-Siris Syndrome? Broadening the phenotype with 17 additional individuals
Coffin-Siris syndrome 6, DD
ASD, ADHD, ID, epilepsy/seizures
Support
Heterozygosity for ARID2 loss-of-function mutations in individuals with a Coffin-Siris syndrome-like phenotype.
Coffin-Siris syndrome 6
Support
Phenotypic and molecular spectra of patients with switch/sucrose nonfermenting complex-related intellectual disability disorders in Korea
Coffin-Siris syndrome 6, DD, ID
Support
Decoding complex inherited phenotypes in rare disorders: the DECIPHERD initiative for rare undiagnosed diseases in Chile
ASD, ID
Recent Recommendation
Whole genome sequencing and variant discovery in the ASPIRE autism spectrum disorder cohort.
ASD
Recent Recommendation
ARID2-related disorder: further delineation of the clinical phenotype of 27 novel individuals and description of an epigenetic signature
Coffin-Siris syndrome 6, DD, ID
Autistic behavior, ADHD, epilepsy/seizures
GEN1089R001
missense_variant
c.940C>T
p.Arg314Cys
De novo
Simplex
GEN1089R002
splice_site_variant
c.1330+1G>A
De novo
GEN1089R003
frameshift_variant
c.2406del
p.Phe802LeufsTer20
De novo
GEN1089R004
stop_gained
c.1028T>A
p.Leu343Ter
Unknown
GEN1089R005
frameshift_variant
c.4310del
p.Ala1437GlyfsTer16
De novo
GEN1089R006
stop_gained
c.4318C>T
p.Gln1440Ter
De novo
GEN1089R007
frameshift_variant
c.3280_3281del
p.Ser1094ProfsTer10
De novo
GEN1089R008
frameshift_variant
c.26del
p.Pro9LeufsTer49
De novo
GEN1089R009
copy_number_loss
GEN1089R010
copy_number_loss
Unknown
GEN1089R011
frameshift_variant
c.1158dup
p.Asn387Ter
De novo
GEN1089R012
stop_gained
c.399C>G
p.Tyr133Ter
De novo
GEN1089R013
stop_gained
c.4444C>T
p.Gln1482Ter
De novo
GEN1089R014
frameshift_variant
c.4687_4690dup
p.Thr1564LysfsTer5
De novo
GEN1089R015
frameshift_variant
c.2645_2646insCT
p.Val883LeufsTer10
De novo
GEN1089R016
copy_number_loss
Unknown
GEN1089R017a
missense_variant
c.2122C>T
p.Pro708Ser
Unknown
Unknown
GEN1089R018
missense_variant
c.5036G>A
p.Arg1679Gln
De novo
GEN1089R019
stop_gained
c.2377C>T
p.Gln793Ter
De novo
GEN1089R020
initiator_codon_variant
c.327T>G
p.Asp109Glu
Unknown
GEN1089R021
initiator_codon_variant
c.2T>G
p.Met1?
Unknown
GEN1089R022
missense_variant
c.5141C>T
p.Ser1714Phe
Unknown
GEN1089R023
missense_variant
c.4390C>T
p.Arg1464Cys
Familial
Paternal
GEN1089R024
frameshift_variant
c.1932_1936del
p.Gln644HisfsTer61
De novo
GEN1089R025
frameshift_variant
c.300del
p.Tyr100Ter
Unknown
Not maternal
GEN1089R026
initiator_codon_variant
c.2T>G
p.Met1?
Unknown
GEN1089R027
missense_variant
c.1652C>T
p.Ser551Leu
Unknown
GEN1089R028
missense_variant
c.940C>T
p.Arg314Cys
Unknown
GEN1089R029
frameshift_variant
c.4687_4690dup
p.Thr1564LysfsTer5
De novo
GEN1089R030
frameshift_variant
c.2645_2646insCT
p.Val883LeufsTer10
De novo
GEN1089R031
stop_gained
c.4444C>T
p.Gln1482Ter
De novo
GEN1089R032
copy_number_loss
De novo
GEN1089R033
stop_gained
c.2983C>T
p.Gln995Ter
De novo
GEN1089R034
missense_variant
c.625G>A
p.Val209Met
De novo
Simplex
GEN1089R035
synonymous_variant
c.2796A>G
p.Pro932=
De novo
Simplex
GEN1089R036
frameshift_variant
c.5399_5402dup
p.Ile1802SerfsTer3
De novo
Simplex
GEN1089R037
frameshift_variant
c.4425del
p.Ser1476LeufsTer9
Unknown
Simplex
GEN1089R038
frameshift_variant
c.857_902del
p.Val286AlafsTer27
Unknown
Simplex
GEN1089R039
missense_variant
c.4867G>C
p.Asp1623His
Unknown
Simplex
GEN1089R040
missense_variant
c.5198T>C
p.Ile1733Thr
Unknown
Simplex
GEN1089R041
frameshift_variant
c.1746_1747del
p.Arg582SerfsTer6
De novo
GEN1089R042
stop_gained
c.2872C>T
p.Gln958Ter
De novo
GEN1089R043
frameshift_variant
c.237del
p.Arg80GlufsTer10
De novo
GEN1089R044
stop_gained
c.5305C>T
p.Arg1769Ter
De novo
GEN1089R045
copy_number_loss
Unknown
GEN1089R046
copy_number_loss
Unknown
GEN1089R047
frameshift_variant
c.415del
p.Ser139ArgfsTer76
De novo
GEN1089R048
frameshift_variant
c.1199del
p.Tyr400SerfsTer16
De novo
GEN1089R049
stop_gained
c.5260C>T
p.Arg1754Ter
De novo
GEN1089R050
copy_number_loss
Unknown
GEN1089R051
frameshift_variant
c.1332del
p.Asp444GlufsTer3
Unknown
GEN1089R052
frameshift_variant
c.2814_2815del
p.Tyr939CysfsTer11
Unknown
GEN1089R053
copy_number_loss
Unknown
GEN1089R054
copy_number_loss
Unknown
GEN1089R055
stop_gained
c.3680C>T
p.Gln1227Ter
De novo
GEN1089R056
copy_number_loss
Unknown
GEN1089R057
stop_gained
c.5070C>G
p.His1690Gln
Unknown
GEN1089R058
frameshift_variant
c.4255_4256del
p.Pro1419CysfsTer24
De novo
GEN1089R059
inversion
De novo
Simplex
GEN1089R060
inversion
Familial
Maternal
GEN1089R061a
missense_variant
c.1486G>C
p.Ala496Pro
Unknown
Multiplex (monozygotic twins)
GEN1089R061b
missense_variant
c.4634A>G
p.Asn1545Ser
Unknown
Multiplex (monozygotic twins)
GEN1089R062
frameshift_variant
c.1784_1785del
p.His595ArgfsTer30
De novo
GEN1089R063
frameshift_variant
c.2114del
p.Ser705IlefsTer53
De novo
GEN1089R064
frameshift_variant
c.118dup
p.Val40GlyfsTer26
De novo
Simplex
GEN1089R065
frameshift_variant
c.400dup
p.Gln134ProfsTer20
Unknown
Not maternal
Simplex
GEN1089R066
frameshift_variant
c.836_839dup
p.Asp280GlufsTer4
De novo
Simplex
GEN1089R067
inframe_deletion
c.988_1008del
p.Leu330_Gly336del
De novo
Simplex
GEN1089R068
frameshift_variant
c.1261dup
p.Val421GlyfsTer40
De novo
Simplex
GEN1089R069
frameshift_variant
c.1556_1559del
p.Asp519ValfsTer9
De novo
Simplex
GEN1089R070
frameshift_variant
c.2401_2402del
p.Met801ValfsTer39
De novo
Simplex
GEN1089R071
frameshift_variant
c.2441_2442del
p.Thr814SerfsTer26
De novo
Simplex
GEN1089R072
frameshift_variant
c.2982del
p.Gln995AsnfsTer15
Unknown
Unknown
GEN1089R073
frameshift_variant
c.3299_3302dup
p.Ala1102GlyfsTer4
De novo
Simplex
GEN1089R074
frameshift_variant
c.3411_3412del
p.Gly1139SerfsTer20
De novo
Simplex
GEN1089R075
frameshift_variant
c.3654dup
p.Ala1219SerfsTer22
De novo
Simplex
GEN1089R076
stop_gained
c.3814C>T
p.Arg1272Ter
De novo
Simplex
GEN1089R077
frameshift_variant
c.4021_4027del
p.Ser1341LysfsTer2
De novo
Simplex
GEN1089R078
frameshift_variant
c.4607_4610del
p.Val1536GlufsTer29
De novo
Simplex
GEN1089R079
stop_gained
c.4732C>T
p.Gln1578Ter
De novo
Simplex
GEN1089R080
splice_site_variant
c.4923-1G>C
p.?
De novo
Simplex
GEN1089R081
splice_site_variant
c.5061+2T>C
p.?
De novo
Simplex
GEN1089R082
stop_gained
c.5260C>T
p.Arg1754Ter
De novo
Simplex
GEN1089R083
stop_gained
c.5305C>T
p.Arg1769Ter
De novo
Simplex
GEN1089R084
copy_number_loss
Familial
Paternal
Simplex
GEN1089R085
copy_number_loss
De novo
Simplex
GEN1089R086
copy_number_loss
c.(705+1_706-1)_(1330+1_1331-1)del
Familial
Maternal
Simplex
GEN1089R087
copy_number_loss
De novo
Simplex
GEN1089R088
copy_number_loss
De novo
Simplex
GEN1089R089
copy_number_loss
De novo
Simplex
GEN1089R090
copy_number_loss
Familial
Maternal
Simplex
GEN1089R091a
missense_variant
c.1150G>A
p.Ala384Thr
Familial
Paternal
Simplex
GEN1089R091b
missense_variant
c.4585G>A
p.Gly1529Arg
Familial
Maternal
Simplex
GEN1089R092
missense_variant
c.484G>T
p.Val162Leu
Familial
Paternal
Simplex
GEN1089R093
missense_variant
c.335A>C
p.Glu112Ala
Familial
Paternal
Simplex
GEN1089R094
missense_variant
c.3197C>T
p.Pro1066Leu
De novo
Simplex
No Common Variants Available
12
Deletion-Duplication
21
No Animal Model Data Available
No Interactions Available