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Relevance to Autism

A number of de novo variants in the ARHGEF2 gene, including three potenitally deleterious de novo missense variants, have been identiified in ASD probands (De Rubeis et al., 2014; Yuen et al., 2017; Turner et al., 2017; Guo et al., 2019; Satterstrom et al., 2020). A de novo non-coding variant that was predicted to target the ARHGEF2 gene via chromatin interactions was identified in a Korean ASD proband from a simplex family in Kim et al., 2022; functional analysis in human induced pluripotent stem cells derived from the proband and the proband's parents demonstrated that this variant resulted in significantly reduced levels of ARHGEF2 expression in patient-derived hiPSCs compared to parent-derived hiPSCs.

Molecular Function

Rho GTPases play a fundamental role in numerous cellular processes that are initiated by extracellular stimuli that work through G protein coupled receptors. The encoded protein may form complex with G proteins and stimulate rho-dependent signals. Homozygous mutations in this gene are responsible for neurodevelopmental disorder with midbrain and hindbrain malformations (NEDMHM; OMIM 617523), a disorder characterized by intellectual disability and speech delay associated with mild microcephaly and midbrain-hindbrain malformations on brain imaging (Ravindran et al., 2017).

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Synaptic, transcriptional and chromatin genes disrupted in autism.
ASD
Support
Homozygous ARHGEF2 mutation causes intellectual disability and midbrain-hindbrain malformation
DD, ID
Support
Whole genome sequencing resource identifies 18 new candidate genes for autism spectrum disorder
ASD
Support
Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism
ASD
Support
Genome sequencing identifies multiple deleterious variants in autism patients with more severe phenotypes.
ASD
Support
Genomic Patterns of De Novo Mutation in Simplex Autism
ASD
Recent Recommendation
Non-coding de novo mutations in chromatin interactions are implicated in autism spectrum disorder
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1341R001 
 missense_variant 
 c.1043C>T 
 p.Ala348Val 
 De novo 
  
  
 GEN1341R002 
 intron_variant 
 c.2260-77G>T 
  
 De novo 
  
 Simplex 
 GEN1341R003 
 intron_variant 
 c.470+24G>A 
  
 De novo 
  
 Multiplex 
 GEN1341R004 
 intron_variant 
 c.63+3844_63+3855del 
  
 De novo 
  
 Simplex 
 GEN1341R005 
 missense_variant 
 c.1030C>T 
 p.Arg344Cys 
 De novo 
  
 Multiplex 
 GEN1341R006 
 missense_variant 
 c.1565C>T 
 p.Ser522Leu 
 De novo 
  
  
 GEN1341R007 
 intergenic_variant 
 g.155445465T>C 
  
 De novo 
  
 Simplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
1
Duplication
 44
 
1
Duplication
 1
 
1
Duplication
 1
 
1
Deletion-Duplication
 11
 

No Animal Model Data Available

No PIN Data Available
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