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Relevance to Autism

Chen et al., 2025 integrated cortex cell-specific cis-regulatory element annotations, a deep learning-based variant prediction model, and massively parallel reporter assays to systematically evaluate the functional impact of 227,878 non-coding de novo mutations (ncDNMs) in ASD probands from Simons Simplex Collection (SSC) and Autism Speaks MSSNG resource (MSSNG) cohorts and identified a ncDNM that down-regulated expression of the ARHGAP30 gene in a SSC proband. A de novo loss-of-function variant, a de novo missense variant, and a de novo in-frame deletion variant have also been identified in the ARHGAP30 gene in ASD probands (Iossifov et al., 2014; Zhou et al., 2022).

Molecular Function

Enables GTPase activator activity. Involved in negative regulation of Rho protein signal transduction. Located in intracellular membrane-bounded organelle.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Massively parallel characterization of non-coding de novo mutations in autism spectrum disorder
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
The contribution of de novo coding mutations to autism spectrum disorder
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1510R001 
 intergenic_variant 
 G>A 
  
 De novo 
  
 Simplex 
 GEN1510R002 
 stop_gained 
 c.3049C>T 
 p.Arg1017Ter 
 De novo 
  
 Simplex 
 GEN1510R003 
 inframe_deletion 
 c.613_615del 
 p.Glu205del 
 De novo 
  
 Simplex 
 GEN1510R004 
 missense_variant 
 c.1295C>T 
 p.Pro432Leu 
 De novo 
  
 Simplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
1
Duplication
 50
 
1
Duplication
 1
 
1
Deletion
 1
 
1
Deletion-Duplication
 11
 
1
Deletion
 2
 

No Animal Model Data Available

No PIN Data Available
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