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Relevance to Autism

Three rare and potentially damaging de novo missense variants in the ARF3 gene were identified in ASD probands from the SPARK cohort (Feliciano et al., 2019; Zhou et al., 2022). Transmission and de novo association (TADA) analysis of whole-exome and whole-genome sequencing data from the Autism Sequencing Consortium, the Simons Simplex Collection, the MSSNG cohort, and the SPARK cohort in Trost et al., 2022 identified ARF3 as an ASD-associated gene with a false discovery rate (FDR) < 0.1. De novo missense variants in ARF3 have also been shown to cause a neurodevelopmental syndrome characterized by developmental delay/intellectual disability, epilepsy, and brain abnormalities (Sakamoto et al., 2021; Fasano et al., 2022).

Molecular Function

GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Exome sequencing of 457 autism families recruited online provides evidence for autism risk genes
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
De novo ARF3 variants cause neurodevelopmental disorder with brain abnormality
DD, epilepsy/seizures
ID
Support
Dominant ARF3 variants disrupt Golgi integrity and cause a neurodevelopmental disorder recapitulated in zebrafish
DD, ID
Epilepsy/seizures
Recent Recommendation
Genomic architecture of autism from comprehensive whole-genome sequence annotation
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1382R001 
 missense_variant 
 c.74T>C 
 p.Leu25Pro 
 De novo 
  
  
 GEN1382R002 
 missense_variant 
 c.394A>G 
 p.Asn132Asp 
 De novo 
  
  
 GEN1382R003 
 missense_variant 
 c.224G>A 
 p.Arg75Gln 
 De novo 
  
  
 GEN1382R004 
 missense_variant 
 c.200A>T 
 p.Asp67Val 
 De novo 
  
 Simplex 
 GEN1382R005 
 missense_variant 
 c.296G>T 
 p.Arg99Leu 
 De novo 
  
 Simplex 
 GEN1382R006 
 missense_variant 
 c.379A>G 
 p.Lys127Glu 
 De novo 
  
  
 GEN1382R007a 
 missense_variant 
 c.34C>G 
 p.Leu12Val 
 De novo 
  
  
 GEN1382R007b 
 missense_variant 
 c.200A>T 
 p.Asp67Val 
 De novo 
  
  
 GEN1382R008 
 missense_variant 
 c.139C>T 
 p.Pro47Ser 
 De novo 
  
  
 GEN1382R009 
 missense_variant 
 c.277G>A 
 p.Asp93Asn 
 De novo 
  
  
 GEN1382R010 
 missense_variant 
 c.95C>A 
 p.Thr32Asn 
 De novo 
  
  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
12
Duplication
 1
 
12
Deletion-Duplication
 8
 

No Animal Model Data Available

No PIN Data Available
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