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Relevance to Autism

Usmani et al., 2021 reported two biallelic and eight de novo heterozygous variants in the AP1G1 gene associated with a neurodevelopmental disorder characterized by mild to severe intellectual disability, epilepsy, and developmental delay in eleven families from different ethnicities; behavioral abnormalities were frequently observed in affected individuals, with three of the patients with de novo AP1G1 variants in this report presenting with autism spectrum disorder. Functional assessment of NDD-associated missense variants in this report demonstrated that while both recessively inherited and de novo missense variants affected AP1G1 protein levels, recessively inherited missense variants affected the endosome recycling pathway, whereas de novo missense variants resulted in abnormal cellular localization; furthermore, AP1G1 with NDD-associated missense variants failed to rescue morphological defects and lethality in ap1g1 -/- zebrafish. A de novo missense variant in AP1G1 had previously been identified in an ASD proband from the Autism Sequencing Consortium (De Rubeis et al., 2014).

Molecular Function

Adaptins are important components of clathrin-coated vesicles transporting ligand-receptor complexes from the plasma membrane or from the trans-Golgi network to lysosomes. The adaptin family of proteins is composed of four classes of molecules named alpha, beta-, beta prime- and gamma- adaptins. Adaptins, together with medium and small subunits, form a heterotetrameric complex called an adaptor, whose role is to promote the formation of clathrin-coated pits and vesicles. The protein encoded by this gene is a gamma-adaptin protein and it belongs to the adaptor complexes large subunits family.

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References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
De novo and bi-allelic variants in AP1G1 cause neurodevelopmental disorder with developmental delay, intellectual disability, and epilepsy
DD, ID
ASD, epilepsy/seizures
Support
Integrating de novo and inherited variants in 42
ASD
Support
Synaptic, transcriptional and chromatin genes disrupted in autism.
ASD
Support
DD, ID
Epilepsy/seizures, autistic features

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1258R001a 
 missense_variant 
 c.737C>A 
 p.Pro246His 
 Familial 
 Both parents 
 Multiplex 
 GEN1258R002b 
 missense_variant 
 c.1105A>G 
 p.Ser369Gly 
 Familial 
 Both parents 
 Multiplex 
 GEN1258R003 
 missense_variant 
 c.44G>A 
 p.Arg15Gln 
 De novo 
  
 Simplex 
 GEN1258R004 
 missense_variant 
 c.103C>T 
 p.Arg35Trp 
 De novo 
  
 Simplex 
 GEN1258R005 
 missense_variant 
 c.103C>T 
 p.Arg35Trp 
 De novo 
  
 Simplex 
 GEN1258R006 
 missense_variant 
 c.104G>A 
 p.Arg35Gln 
 De novo 
  
 Simplex 
 GEN1258R007 
 frameshift_variant 
 c.229del 
 p.Gln77LysfsTer11 
 De novo 
  
 Simplex 
 GEN1258R008 
 frameshift_variant 
 c.399_400del 
 p.Glu133AspfsTer37 
 De novo 
  
 Simplex 
 GEN1258R009 
 missense_variant 
 c.747G>T 
 p.Gln249His 
 De novo 
  
 Simplex 
 GEN1258R010 
 splice_site_variant 
 c.928-2A>C 
  
 De novo 
  
 Simplex 
 GEN1258R011 
 missense_variant 
 c.2459C>G 
 p.Ser820Cys 
 De novo 
  
 Simplex 
 GEN1258R012 
 missense_variant 
 c.1694G>A 
 p.Arg565Lys 
 De novo 
  
  
 GEN1258R013 
 synonymous_variant 
 c.2094T>C 
 p.Pro698%3D 
 De novo 
  
  
 GEN1258R014 
 stop_gained 
 c.1322T>G 
 p.Val441Gly 
 De novo 
  
  
 GEN1258R015 
 missense_variant 
 c.671G>A 
 p.Arg224His 
 De novo 
  
 Simplex 
 GEN1258R016 
 stop_gained 
 c.136C>T 
 p.Arg46Ter 
 De novo 
  
 Multiplex 
 GEN1258R017 
 missense_variant 
 c.43C>T 
 p.Arg15Trp 
 De novo 
  
  
 GEN1258R018 
 stop_gained 
 c.1246C>T 
 p.Pro416Ser 
 De novo 
  
  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
16
Duplication
 1
 
16
Duplication
 1
 
16
Deletion-Duplication
 23
 
16
Duplication
 4
 
16
Deletion
 1
 
16
Duplication
 2
 
16
Deletion
 2
 
16
Duplication
 1
 
16
Deletion-Duplication
 9
 

No Animal Model Data Available

 

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