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Relevance to Autism

De novo variants in the ANKRD17 gene, including a frameshift variant and several missense variants, have been identified in ASD probands from the Simons Simplex Collection, the Autism Sequencing Consortium, and AGRE (De Rubeis et al., 2014; Iossifov et al., 2014; Yuen et al., 2017; Satterstrom et al., 2020). Chopra et al., 2021 reported 34 individuals from 32 families with heterozygous ANKRD17 variants and delineated a neurodevelopmental disorder chateracterized by a variable degree of developmental delay/intellectual disability, particularly affecting speech; autism spectrum disorder or autistic features were reported in 8 individuals from this cohort.

Molecular Function

The protein encoded by this gene belongs to the family of ankyrin repeat-containing proteins, and contains two distinct arrays of ankyrin repeats in its amino-terminal region, one with 15 ankyrin repeats, and the other with 10 ankyrin repeats. It also contains a nuclear export signal, nuclear localization signal, and a cyclin-binding RXL motif. Localization of this protein to the nucleus has been shown experimentally, and interactions between this protein and cyclin-dependent kinase 2 have been observed. It has been suggested that this protein plays a role in both DNA replication and in both anti-viral and anti-bacterial innate immune pathways.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Synaptic, transcriptional and chromatin genes disrupted in autism.
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism
ASD
Support
Whole genome sequencing resource identifies 18 new candidate genes for autism spectrum disorder
ASD
Support
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Recent Recommendation
Heterozygous ANKRD17 loss-of-function variants cause a syndrome with intellectual disability, speech delay, and dysmorphism
DD, ID
ASD, ADHD, epilepsy/seizures

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1250R001 
 missense_variant 
 c.670G>A 
 p.Ala224Thr 
 De novo 
  
  
 GEN1250R002 
 inframe_deletion 
 c.6034_6036del 
 p.Thr2012del 
 De novo 
  
  
 GEN1250R003 
 missense_variant 
 c.4224A>C 
 p.Glu1408Asp 
 De novo 
  
 Simplex 
 GEN1250R004 
 missense_variant 
 c.4407G>T 
 p.Arg1469Ser 
 De novo 
  
 Multiplex 
 GEN1250R005 
 frameshift_variant 
 c.6168dup 
 p.Arg2057Ter 
 De novo 
  
  
 GEN1250R006 
 splice_site_variant 
 c.1958-2A>C 
  
 De novo 
  
  
 GEN1250R007 
 missense_variant 
 c.4091G>C 
 p.Gly1364Ala 
 De novo 
  
  
 GEN1250R008 
 frameshift_variant 
 c.4341_4344del 
 p.Gln1448LeufsTer12 
 De novo 
  
  
 GEN1250R009 
 missense_variant 
 c.3359T>G 
 p.Leu1120Arg 
 De novo 
  
  
 GEN1250R010 
 missense_variant 
 c.1556T>C 
 p.Leu519Pro 
 De novo 
  
  
 GEN1250R011 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN1250R012 
 stop_gained 
 c.2718C>A 
 p.Cys906Ter 
 De novo 
  
  
 GEN1250R013 
 frameshift_variant 
 c.5360_5363del 
 p.Gln1787ArgfsTer5 
 De novo 
  
  
 GEN1250R014 
 frameshift_variant 
 c.5304_5310del 
 p.Asp1770Ter 
 De novo 
  
  
 GEN1250R015 
 missense_variant 
 c.5638T>C 
 p.Ser1880Pro 
 De novo 
  
  
 GEN1250R016 
 stop_gained 
 c.2623G>T 
 p.Glu875Ter 
 Familial 
 Maternal 
 Simplex 
 GEN1250R017 
 splice_site_variant 
 c.1890+1G>A 
  
 De novo 
  
  
 GEN1250R018 
 frameshift_variant 
 c.5756dup 
 p.Ala1920SerfsTer20 
 De novo 
  
  
 GEN1250R019 
 frameshift_variant 
 c.6460_6461del 
 p.Pro2154SerfsTer18 
 De novo 
  
  
 GEN1250R020 
 stop_gained 
 c.751C>T 
 p.Arg251Ter 
 Unknown 
  
  
 GEN1250R021 
 stop_gained 
 c.4403T>G 
 p.Leu1468Ter 
 De novo 
  
  
 GEN1250R022 
 frameshift_variant 
 c.90dup 
 p.Ala31ArgfsTer47 
 De novo 
  
  
 GEN1250R023 
 inframe_indel 
 c.2005_2006delinsGCTAATAATGA 
 p.Ser669delinsAlaAsnAsnAsp 
 De novo 
  
  
 GEN1250R024 
 frameshift_variant 
 c.495_496delinsC 
 p.Arg165SerfsTer3 
 Unknown 
 Not maternal 
  
 GEN1250R025 
 frameshift_variant 
 c.4007del 
 p.Cys1336LeufsTer24 
 Unknown 
  
  
 GEN1250R026 
 stop_gained 
 c.2497C>T 
 p.Gln833Ter 
 De novo 
  
  
 GEN1250R027 
 frameshift_variant 
 c.3751_3758delinsGGAC 
 p.Asn1251GlyfsTer7 
 De novo 
  
  
 GEN1250R028 
 frameshift_variant 
 c.5360_5363del 
 p.Gln1787ArgfsTer5 
 De novo 
  
  
 GEN1250R029 
 frameshift_variant 
 c.5942_5948del 
 p.Pro1981HisfsTer21 
 De novo 
  
  
 GEN1250R030 
 missense_variant 
 c.833G>T 
 p.Gly278Val 
 De novo 
  
  
 GEN1250R031 
 missense_variant 
 c.7300C>G 
 p.Arg2434Gly 
 De novo 
  
  
 GEN1250R032 
 frameshift_variant 
 c.1793dup 
 p.Asp598GlufsTer9 
 De novo 
  
  
 GEN1250R033 
 missense_variant 
 c.3557C>G 
 p.Pro1186Arg 
 De novo 
  
  
 GEN1250R034 
 missense_variant 
 c.1129G>A 
 p.Ala377Thr 
 De novo 
  
 Multiplex (monozygotic twins) 
 GEN1250R035 
 missense_variant 
 c.2147T>G 
 p.Leu716Arg 
 De novo 
  
  
 GEN1250R036 
 frameshift_variant 
 c.3769_3772del 
 p.Thr1257Ter 
 De novo 
  
  
 GEN1250R037 
 frameshift_variant 
 c.3683del 
 p.Asn1228MetfsTer11 
 De novo 
  
  
 GEN1250R038 
 synonymous_variant 
 c.7713G>A 
 p.Lys2571%3D 
 De novo 
  
 Multiplex 
 GEN1250R039 
 synonymous_variant 
 c.1185G>A 
 p.Thr395%3D 
 De novo 
  
  
 GEN1250R040 
 synonymous_variant 
 c.90C>G 
 p.Pro30%3D 
 De novo 
  
  
 GEN1250R041 
 synonymous_variant 
 c.4461G>A 
 p.Lys1487%3D 
 De novo 
  
 Simplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
4
Duplication
 1
 
4
Deletion
 1
 
4
Deletion
 1
 
4
Deletion-Duplication
 3
 
4
Deletion
 1
 
4
Deletion-Duplication
 23
 
4
Duplication
 1
 
4
Deletion
 1
 

No Animal Model Data Available

 

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