Summary Statistics:
ASD Reports: 34
Recent Reports: 6
Annotated variants: 50
Associated CNVs: 5
Evidence score: 3
Gene Score: 3
Relevance to Autism
Three different missense mutations in the ANK3 gene, including a recurrent de novo mutation, were identified in four unrelated ASD patients in an exome sequencing report using cases from AGRE (Bi et al., 2012).
Molecular Function
Ankyrins are a family of proteins that are believed to link the integral membrane proteins to the underlying spectrin-actin cytoskeleton and play key roles in activities such as cell motility, activation, proliferation, contact, and the maintenance of specialized membrane domains. Multiple isoforms of ankyrin with different affinities for various target proteins are expressed in a tissue-specific, developmentally regulated manner. Most ankyrins are typically composed of three structural domains: an amino-terminal domain containing multiple ankyrin repeats; a central region with a highly conserved spectrin binding domain; and a carboxy-terminal regulatory domain which is the least conserved and subject to variation. Ankyrin 3 is an immunologically distinct gene product from ankyrins 1 and 2, and was originally found at the axonal initial segment and nodes of Ranvier of neurons in the central and peripheral nervous systems.
References
Primary
Mutations of ANK3 identified by exome sequencing are associated with autism susceptibility.
ASD
Positive Association
Collaborative genome-wide association analysis supports a role for ANK3 and CACNA1C in bipolar disorder.
BPD
Positive Association
De Novo Coding Variants Are Strongly Associated with Tourette Disorder.
Tourette syndrome
Positive Association
A genome-wide association study implicates diacylglycerol kinase eta (DGKH) and several other genes in the etiology of bipolar disorder.
BPD
Positive Association
De novo mutations in epileptic encephalopathies.
Epilepsy
IS, LGS, DD, ID, ASD, ADHD
Positive Association
Genome-wide association study identifies five new schizophrenia loci.
SCZ, BPD
Positive Association
Molecular and genetic evidence for abnormalities in the nodes of Ranvier in schizophrenia.
SCZ
Positive Association
Gene variants associated with schizophrenia in a Norwegian genome-wide study are replicated in a large European cohort.
SCZ
Positive Association
Two variants in Ankyrin 3 (ANK3) are independent genetic risk factors for bipolar disorder.
BPD
Support
De novo genic mutations among a Chinese autism spectrum disorder cohort.
ASD
Support
Mutational Landscape of Autism Spectrum Disorder Brain Tissue
ASD
Support
The contribution of protein intrinsic disorder to understand the role of genetic variants uncovered by autism spectrum disorders exome studies.
Support
ANK3 related neurodevelopmental disorders: expanding the spectrum of heterozygous loss-of-function variants
DD, ID
Autistic features, stereotypy, epilepsy/seizures
Support
Bipolar disorder
Epilepsy/seizures
Support
Genes that Affect Brain Structure and Function Identified by Rare Variant Analyses of Mendelian Neurologic Disease.
ID
Support
Exome sequencing of 457 autism families recruited online provides evidence for autism risk genes
ASD
Support
GABA/Glutamate synaptic pathways targeted by integrative genomic and electrophysiological explorations distinguish autism from intellectual disabil...
ASD, ID
Support
Inherited and multiple de novo mutations in autism/developmental delay risk genes suggest a multifactorial model.
ASD
Support
Large-scale discovery of novel genetic causes of developmental disorders.
Unknown diagnosis
Support
First de novo ANK3 nonsense mutation in a boy with intellectual disability, speech impairment and autistic features.
ID, ADHD
Autistic features, macrocephaly
Support
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
Leveraging blood serotonin as an endophenotype to identify de novo and rare variants involved in autism.
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
De novo mutations revealed by whole-exome sequencing are strongly associated with autism.
ASD
Recent Recommendation
Disruption of the psychiatric risk gene Ankyrin 3 enhances microtubule dynamics through GSK3/CRMP2 signaling.
Recent Recommendation
Ankyrin-G isoform imbalance and interneuronopathy link epilepsy and bipolar disorder.
Recent Recommendation
Psychiatric risk factor ANK3/ankyrin-G nanodomains regulate the structure and function of glutamatergic synapses.
Recent Recommendation
Ankyrin-G regulates neurogenesis and Wnt signaling by altering the subcellular localization of -catenin.
Recent Recommendation
Converging Evidence for Epistasis between ANK3 and Potassium Channel Gene KCNQ2 in Bipolar Disorder.
Recent Recommendation
Homozygous and heterozygous disruptions of ANK3: at the crossroads of neurodevelopmental and psychiatric disorders.
ASD, ADHD, ID
Epilepsy
GEN406R001
missense_variant
c.4705T>G
p.Ser1569Ala
De novo
Multiplex
GEN406R002
missense_variant
c.11159C>T
p.Thr3720Met
Familial
Inherited
Simplex
GEN406R003
missense_variant
c.12763A>C
p.Thr4255Pro
Familial
Inherited
Multiplex
GEN406R004
translocation
Unknown
GEN406R005a
frameshift_variant
c.1808-1877del
Familial
Both parents
Multiplex
GEN406R006
missense_variant
c.647A>G
p.Lys216Arg
De novo
Simplex
GEN406R007
synonymous_variant
c.11787A>T
p.Ala3929=
De novo
Unknown
GEN406R008
missense_variant
c.3727C>T
p.Arg1243Cys
Familial
Paternal
Simplex
GEN406R009a
missense_variant
c.9652C>T
p.Leu3218Phe
Familial
Both parents
Multiplex
GEN406R010
missense_variant
c.7267C>T
p.Arg2423Cys
De novo
Simplex
GEN406R011
missense_variant
c.6812T>C
p.Met2271Thr
De novo
Simplex
GEN406R012
missense_variant
c.2243C>T
p.Ala748Val
Familial
Maternal
GEN406R013
missense_variant
c.1819G>C
p.Val613Leu
Familial
Maternal
GEN406R014
missense_variant
c.2243C>T
p.Ala748Val
Familial
Paternal
GEN406R015
missense_variant
c.3644C>T
p.Pro1215Leu
Familial
Paternal
GEN406R016
missense_variant
c.1217G>A
p.Arg412Gln
Familial
Paternal
GEN406R017
stop_gained
c.82C>T
p.His28Tyr
Familial
Paternal
GEN406R018
missense_variant
c.626C>T
p.Thr209Met
De novo
Simplex
GEN406R019
stop_gained
c.1570C>T:,c.1621C>T:,c.1603C>T
p.Arg524Ter;p.Arg541Ter;p.Arg535Ter
De novo
Simplex
GEN406R020
stop_gained
c.1990G>T
p.Gly664Ter
De novo
Simplex
GEN406R021
splice_site_variant
c.16+1G>A
p.?
Familial
Paternal
Simplex
GEN406R022
missense_variant
c.3662C>T
p.Pro1221Leu
Familial
Paternal
Simplex
GEN406R023
missense_variant
c.1448G>A
p.Arg483Gln
Unknown
Not maternal
Simplex
GEN406R024
missense_variant
c.425C>T
p.Ala142Val
De novo
GEN406R025
frameshift_variant
c.2032del
p.Leu678SerfsTer7
Unknown
Not maternal
GEN406R026
frameshift_variant
c.109del
p.Ala37GlnfsTer4
De novo
Simplex
GEN406R027
stop_gained
c.769C>T
p.Arg257Ter
Unknown
Not maternal
GEN406R028
frameshift_variant
c.705del
p.Glu236SerfsTer16
De novo
GEN406R029
synonymous_variant
c.2103C>G
p.Leu701%3D
Unknown
GEN406R030
missense_variant
c.5672C>T
p.Thr1891Ile
Unknown
GEN406R031
missense_variant
c.7673G>A
p.Arg2558His
De novo
Simplex
GEN406R032
missense_variant
c.7448C>T
p.Ser2483Leu
De novo
GEN406R033
missense_variant
c.1675T>G
p.Ser559Ala
De novo
GEN406R034
stop_gained
c.148C>T
p.Arg50Ter
De novo
GEN406R035
synonymous_variant
c.2466C>G
p.Thr822%3D
De novo
GEN406R036
synonymous_variant
c.1077C>T
p.Pro359%3D
De novo
Simplex
GEN406R037
missense_variant
c.851T>G
p.Val284Gly
De novo
GEN406R038
frameshift_variant
c.1807+5499_1807+5500insTA
De novo
Simplex
GEN406R039
missense_variant
c.8713C>T
p.Arg2905Cys
De novo
Simplex
GEN406R040
missense_variant
c.3380C>T
p.Thr1127Met
De novo
GEN406C001
intron_variant
rs9804190
c.1807+464G>A;c.4387+464G>A;c.4408+464G>A;c.4432+464G>A;c.4417+464G>A;c.4366+464G>A;c.4339+464G>A;c.
Two independent case-control samples of European origin (NIMH sample, 413 cases and 563 controls; German sample, 772 cases and 876 controls)
Discovery
GEN406C002
intron_variant
rs10994336
c.97-140415G>A;c.64-140415G>A
minor allele, T
4,387 cases and 6,209 controls from combined WTCCC, STEP-UCL and ED-DUB-STEP2 studies
Discovery
GEN406C003
intron_variant
rs1938526
c.96+74561T>C;c.63+31840T>C
minor allele, G
4,387 cases and 6,209 controls from combined WTCCC, STEP-UCL and ED-DUB-STEP2 studies
Discovery
GEN406C004
intron_variant
rs9804190
c.1807+464G>A;c.4387+464G>A;c.4408+464G>A;c.4432+464G>A;c.4417+464G>A;c.4366+464G>A;c.4339+464G>A;c.
Discovery: German samples (745 cases, 830 controls)
Replication (German discovery cohort of 745 cases, 830 controls)
GEN406C005
intron_variant
rs10994336
c.97-140415G>A;c.64-140415G>A
C/T
Discovery: German samples (745 cases, 830 controls) and NIMH Waves 1-4 samples (457 cases, 562 controls); replication: NIMH Wave 5 (466 cases, 212 controls)
Replication
GEN406C006
intron_variant
rs10761482
c.97-45940A>G;c.64-45940A>G;c.115-45940A>G
Discovery, Norwegian sample of 201 SCZ cases and 305 controls (TOP study)
Discovery
GEN406C007
intron_variant
rs10761482
c.97-45940A>G;c.64-45940A>G;c.115-45940A>G
Replication, European sample of 2663 cases and 13,780 control subjects (SGENE-plus study)
Replication
GEN406C008
intron_variant
rs10994359
c.96+152837A>G;c.63+110116A>G
C/T
16,374 cases with schizophrenia, schizoaffective disorder or bipolar disorder and 14,044 controls
Discovery
GEN406C009
intron_variant
rs9804190
c.1807+464G>A;c.4387+464G>A;c.4408+464G>A;c.4432+464G>A;c.4417+464G>A;c.4366+464G>A;c.4339+464G>A;c.
208 SCZ patients, 64 controls
Discovery
GEN406C010
intron_variant
rs9804190
c.1807+464G>A;c.4387+464G>A;c.4408+464G>A;c.4432+464G>A;c.4417+464G>A;c.4366+464G>A;c.4339+464G>A;c.
Replication: NIMH Wave 5 (466 cases, 212 controls)
Replication [NIMH Wave 5 (466 cases, 212 controls)]
10
Deletion-Duplication
5
No Animal Model Data Available
Summary Statistics:
Total Interactions: 57
Total Publications: 33
Show all nodes
Hide non-ASD
Interactor Symbol
Interactor Name
Interactor Organism
Entrez ID
Uniprot ID
Interaction Type
Evidence
Reference
ARHGAP22
Rho GTPase activating protein 22
58504
Q7Z5H3
IP; LC-MS/MS
Huttlin EL , et al. 2015
C10ORF47
proline and serine-rich protein 2
254427
Q86WR7
IP; LC-MS/MS
Huttlin EL , et al. 2015
C16ORF70
chromosome 16 open reading frame 70
80262
Q9BSU1
IP; LC-MS/MS
Huttlin EL , et al. 2015
CDH1
cadherin 1, type 1, E-cadherin (epithelial)
999
P12830
GST
Kizhatil K , et al. 2007
CDH5
Cadherin-5
1003
P33151
IP/WB; Co-localization
Cadwell CM , et al. 2015
CHL1
cell adhesion molecule with homology to L1CAM (close homolog of L1)
10752
O00533
IP; LC-MS/MS
Huttlin EL , et al. 2015
CNGB1
cyclic nucleotide gated channel beta 1
1258
Q14028
IP/WB
Kizhatil K , et al. 2009
DAG1
dystroglycan 1 (dystrophin-associated glycoprotein 1)
1605
Q14118
GST
Ayalon G , et al. 2008
DMD
dystrophin
1756
P11532
GST
Ayalon G , et al. 2008
DOK4
Docking protein 4
55715
Q8TEW6
IP; LC-MS/MS
Huttlin EL , et al. 2015
FEZ1
fasciculation and elongation protein zeta 1 (zygin I)
9638
Q99689
IP; LC-MS/MS
Huttlin EL , et al. 2015
FLNC
filamin C, gamma
2318
Q14315
Y2H; GST; IP/WB
Maiweilidan Y , et al. 2011
HIF1AN
hypoxia inducible factor 1, alpha subunit inhibitor
55662
Q9NWT6
IP; LC-MS/MS
Huttlin EL , et al. 2015
HOOK1
hook homolog 1 (Drosophila)
51361
Q9UJC3
Y2H; IP/WB
Weimer JM , et al. 2005
KCNQ2
potassium voltage-gated channel, KQT-like subfamily, member 2
3785
O43526
in silico target prediction
Rasmussen HB , et al. 2007
KCNQ3
potassium voltage-gated channel, KQT-like subfamily, member 3
3786
O43525
in silico target prediction
Rasmussen HB , et al. 2007
LILRB3
Leukocyte immunoglobulin-like receptor subfamily B member 3
102725035
O75022-2
IP; LC-MS/MS
Huttlin EL , et al. 2015
MAGED1
melanoma antigen family D, 1
9500
Q9Y5V3
IP/WB; GST
Kumar S , et al. 2011
MAPK6
mitogen-activated protein kinase 6
5597
Q16659
Y2H
Bandyopadhyay S , et al. 2010
MAPK8IP1
mitogen-activated protein kinase 8 interacting protein 1
9479
Q6NUQ9
IP; LC-MS/MS
Huttlin EL , et al. 2015
MAPRE3
microtubule-associated protein, RP/EB family, member 3
22924
Q9UPY8
GST; Surface plasmon resonance (SPR)
Leterrier C , et al. 2011
MIR34A
microRNA 34a
407040
N/A
Luciferase reporter assay
Bavamian S , et al. 2015
NEXN
Nexilin
91624
Q0ZGT2
IP; LC-MS/MS
Huttlin EL , et al. 2015
PALM2
paralemmin 2
114299
Q8IXS6
IP; LC-MS/MS
Huttlin EL , et al. 2015
PLEC
plectin
5339
Q15149
Y2H; GST; IP/WB
Maiweilidan Y , et al. 2011
PWP1
PWP1 homolog (S. cerevisiae)
11137
Q13610
IP; LC-MS/MS
Huttlin EL , et al. 2015
RAPGEF5
Rap guanine nucleotide exchange factor (GEF) 5
9771
A8MQ07
IP; LC-MS/MS
Huttlin EL , et al. 2015
RHBG
Rh family, B glycoprotein (gene/pseudogene)
57127
Q9H310
Y2H
Lopez C , et al. 2004
SCN8A
sodium channel, voltage gated, type VIII, alpha subunit
6334
Q9UQD0
in silico target prediction
Gasser A , et al. 2012
SMAD2
SMAD family member 2
4087
Q15796
Y2H
Colland F , et al. 2004
SMAD3
SMAD family member 3
4088
P84022
Y2H
Colland F , et al. 2004
Tiam1
T-cell lymphoma invasion and metastasis 1
21844
Q60610
IP/WB; in vitro binding assay
Bourguignon LY , et al. 2000
UBC
ubiquitin C
7316
P63279
MS
Denis NJ , et al. 2007
UXS1
UDP-glucuronate decarboxylase 1
80146
Q8NBZ7
IP; LC-MS/MS
Huttlin EL , et al. 2015
APC
adenomatous polyposis coli
324
P25054
HITS-CLIP
Preitner N , et al. 2014
Fadd
Fas (TNFRSF6)-associated via death domain
14082
Q61160
IP/WB; GST
Del Rio M , et al. 2003
Fas
Fas(TNF receptor superfamily member 6)
14102
P25446
Y2H; IP/WB; GST
Del Rio M , et al. 2003
FMR1
fragile X mental retardation 1
14265
P35922
HITS-CLIP
Darnell JC , et al. 2011
L1cam
L1 cell adhesion molecule
16728
Q6PGJ3
IP/WB
Valente P , et al. 2016
Mapre1
microtubule-associated protein, RP/EB family, member 1
13589
Q61166
GST; Surface plasmon resonance (SPR)
Leterrier C , et al. 2011
Pik3r1
phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)
18708
P26450
IP/WB; GST
Ignatiuk A , et al. 2005
Sptbn4
spectrin beta, non-erythrocytic 4
80297
E9PZC2
IP/WB
Komada M and Soriano P 2002
Gja1
gap junction protein, alpha 1
24392
P08050
IP/WB
Sato PY , et al. 2011
Kcnc1
potassium voltage gated channel, Shaw-related subfamily, member 1
25327
P25122
IP/WB
Devaux J , et al. 2003
KCNQ2
potassium voltage-gated channel, KQT-like subfamily, member 2
3785
O43526
IP/WB; Co-localization
Xu M and Cooper EC 2015
KCNQ3
potassium voltage-gated channel, KQT-like subfamily, member 3
3786
O43525
IP/WB; Co-localization
Xu M and Cooper EC 2015
Nde1
nudE neurodevelopment protein 1
83836
Q9ES39
IP; LC-MS/MS; IP/WB
Kuijpers M , et al. 2016
Ndel1
nudE neurodevelopment protein 1-like 1
170845
Q78PB6
IP; LC-MS/MS; IP/WB; Co-localization
Kuijpers M , et al. 2016
Nfasc
neurofascin
116690
P97685
Affinity chromatography; MS; in vitro binding assay
Kriebel M , et al. 2012
Nrcam
neuronal cell adhesion molecule
497815
Q6PW34
IP/WB; in vitro binding assay
Davis JQ and Bennett V 1994
Pkp2
plakophilin 2
287925
N/A
IP/WB
Sato PY , et al. 2011
Scn1b
sodium channel, voltage-gated, type I, beta
29686
Q00954
IP/WB
Malhotra JD , et al. 2002
SCN2A
sodium channel, voltage-gated, type II, alpha subunit
6326
Q99250
GST; IP/WB
Bouzidi M , et al. 2002
SCN2A
sodium channel, voltage-gated, type II, alpha subunit
6326
Q99250
IP/WB
Xu M and Cooper EC 2015
SCN2A
sodium channel, voltage-gated, type II, alpha 1
24766
P04775
IP/WB
McEwen DP , et al. 2004
Scn5a
sodium channel, voltage-gated, type V, alpha subunit
25665
P15389
GST; Overlay binding assay; IP/WB
Mohler PJ , et al. 2004
Scnn1b
sodium channel, nonvoltage-gated 1, beta
24767
P37090
IP/WB
Malhotra JD , et al. 2002