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Relevance to Autism

Three different missense mutations in the ANK3 gene, including a recurrent de novo mutation, were identified in four unrelated ASD patients in an exome sequencing report using cases from AGRE (Bi et al., 2012).

Molecular Function

Ankyrins are a family of proteins that are believed to link the integral membrane proteins to the underlying spectrin-actin cytoskeleton and play key roles in activities such as cell motility, activation, proliferation, contact, and the maintenance of specialized membrane domains. Multiple isoforms of ankyrin with different affinities for various target proteins are expressed in a tissue-specific, developmentally regulated manner. Most ankyrins are typically composed of three structural domains: an amino-terminal domain containing multiple ankyrin repeats; a central region with a highly conserved spectrin binding domain; and a carboxy-terminal regulatory domain which is the least conserved and subject to variation. Ankyrin 3 is an immunologically distinct gene product from ankyrins 1 and 2, and was originally found at the axonal initial segment and nodes of Ranvier of neurons in the central and peripheral nervous systems.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Mutations of ANK3 identified by exome sequencing are associated with autism susceptibility.
ASD
Positive Association
Genome-wide association study identifies five new schizophrenia loci.
SCZ, BPD
Positive Association
Molecular and genetic evidence for abnormalities in the nodes of Ranvier in schizophrenia.
SCZ
Positive Association
Gene variants associated with schizophrenia in a Norwegian genome-wide study are replicated in a large European cohort.
SCZ
Positive Association
Two variants in Ankyrin 3 (ANK3) are independent genetic risk factors for bipolar disorder.
BPD
Positive Association
Collaborative genome-wide association analysis supports a role for ANK3 and CACNA1C in bipolar disorder.
BPD
Positive Association
De Novo Coding Variants Are Strongly Associated with Tourette Disorder.
Tourette syndrome
Positive Association
A genome-wide association study implicates diacylglycerol kinase eta (DGKH) and several other genes in the etiology of bipolar disorder.
BPD
Positive Association
De novo mutations in epileptic encephalopathies.
Epilepsy
IS, LGS, DD, ID, ASD, ADHD
Support
Genes that Affect Brain Structure and Function Identified by Rare Variant Analyses of Mendelian Neurologic Disease.
ID
Support
Exome sequencing of 457 autism families recruited online provides evidence for autism risk genes
ASD
Support
GABA/Glutamate synaptic pathways targeted by integrative genomic and electrophysiological explorations distinguish autism from intellectual disabil...
ASD, ID
Support
Inherited and multiple de novo mutations in autism/developmental delay risk genes suggest a multifactorial model.
ASD
Support
ASD, DD
Support
Large-scale discovery of novel genetic causes of developmental disorders.
Unknown diagnosis
Support
First de novo ANK3 nonsense mutation in a boy with intellectual disability, speech impairment and autistic features.
ID, ADHD
Autistic features, macrocephaly
Support
Bipolar disorder
Support
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
Leveraging blood serotonin as an endophenotype to identify de novo and rare variants involved in autism.
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
De novo mutations revealed by whole-exome sequencing are strongly associated with autism.
ASD
Support
De novo genic mutations among a Chinese autism spectrum disorder cohort.
ASD
Support
Mutational Landscape of Autism Spectrum Disorder Brain Tissue
ASD
Support
ASD, ID
Support
The contribution of protein intrinsic disorder to understand the role of genetic variants uncovered by autism spectrum disorders exome studies.
Support
ANK3 related neurodevelopmental disorders: expanding the spectrum of heterozygous loss-of-function variants
DD, ID
Autistic features, stereotypy, epilepsy/seizures
Support
Bipolar disorder
Epilepsy/seizures
Recent Recommendation
Ankyrin-G isoform imbalance and interneuronopathy link epilepsy and bipolar disorder.
Recent Recommendation
Psychiatric risk factor ANK3/ankyrin-G nanodomains regulate the structure and function of glutamatergic synapses.
Recent Recommendation
Ankyrin-G regulates neurogenesis and Wnt signaling by altering the subcellular localization of -catenin.
Recent Recommendation
Converging Evidence for Epistasis between ANK3 and Potassium Channel Gene KCNQ2 in Bipolar Disorder.
Recent Recommendation
Homozygous and heterozygous disruptions of ANK3: at the crossroads of neurodevelopmental and psychiatric disorders.
ASD, ADHD, ID
Epilepsy
Recent Recommendation
Disruption of the psychiatric risk gene Ankyrin 3 enhances microtubule dynamics through GSK3/CRMP2 signaling.

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN406R001 
 missense_variant 
 c.4705T>G 
 p.Ser1569Ala 
 De novo 
  
 Multiplex 
 GEN406R002 
 missense_variant 
 c.11159C>T 
 p.Thr3720Met 
 Familial 
 Inherited 
 Simplex 
 GEN406R003 
 missense_variant 
 c.12763A>C 
 p.Thr4255Pro 
 Familial 
 Inherited 
 Multiplex 
 GEN406R004 
 translocation 
  
  
 Unknown 
  
  
 GEN406R005a 
 frameshift_variant 
 c.1808-1877del 
  
 Familial 
 Both parents 
 Multiplex 
 GEN406R006 
 missense_variant 
 c.647A>G 
 p.Lys216Arg 
 De novo 
  
 Simplex 
 GEN406R007 
 synonymous_variant 
 c.11787A>T 
 p.Ala3929= 
 De novo 
  
 Unknown 
 GEN406R008 
 missense_variant 
 c.3727C>T 
 p.Arg1243Cys 
 Familial 
 Paternal 
 Simplex 
 GEN406R009a 
 missense_variant 
 c.9652C>T 
 p.Leu3218Phe 
 Familial 
 Both parents 
 Multiplex 
 GEN406R010 
 missense_variant 
 c.7267C>T 
 p.Arg2423Cys 
 De novo 
  
 Simplex 
 GEN406R011 
 missense_variant 
 c.6812T>C 
 p.Met2271Thr 
 De novo 
  
 Simplex 
 GEN406R012 
 missense_variant 
 c.2243C>T 
 p.Ala748Val 
 Familial 
 Maternal 
  
 GEN406R013 
 missense_variant 
 c.1819G>C 
 p.Val613Leu 
 Familial 
 Maternal 
  
 GEN406R014 
 missense_variant 
 c.2243C>T 
 p.Ala748Val 
 Familial 
 Paternal 
  
 GEN406R015 
 missense_variant 
 c.3644C>T 
 p.Pro1215Leu 
 Familial 
 Paternal 
  
 GEN406R016 
 missense_variant 
 c.1217G>A 
 p.Arg412Gln 
 Familial 
 Paternal 
  
 GEN406R017 
 stop_gained 
 c.82C>T 
 p.His28Tyr 
 Familial 
 Paternal 
  
 GEN406R018 
 missense_variant 
 c.626C>T 
 p.Thr209Met 
 De novo 
  
 Simplex 
 GEN406R019 
 stop_gained 
 c.1570C>T:,c.1621C>T:,c.1603C>T 
 p.Arg524Ter;p.Arg541Ter;p.Arg535Ter 
 De novo 
  
 Simplex 
 GEN406R020 
 stop_gained 
 c.1990G>T 
 p.Gly664Ter 
 De novo 
  
 Simplex 
 GEN406R021 
 splice_site_variant 
 c.16+1G>A 
 p.? 
 Familial 
 Paternal 
 Simplex 
 GEN406R022 
 missense_variant 
 c.3662C>T 
 p.Pro1221Leu 
 Familial 
 Paternal 
 Simplex 
 GEN406R023 
 missense_variant 
 c.1448G>A 
 p.Arg483Gln 
 Unknown 
 Not maternal 
 Simplex 
 GEN406R024 
 missense_variant 
 c.425C>T 
 p.Ala142Val 
 De novo 
  
  
 GEN406R025 
 frameshift_variant 
 c.2032del 
 p.Leu678SerfsTer7 
 Unknown 
 Not maternal 
  
 GEN406R026 
 frameshift_variant 
 c.109del 
 p.Ala37GlnfsTer4 
 De novo 
  
 Simplex 
 GEN406R027 
 stop_gained 
 c.769C>T 
 p.Arg257Ter 
 Unknown 
 Not maternal 
  
 GEN406R028 
 frameshift_variant 
 c.705del 
 p.Glu236SerfsTer16 
 De novo 
  
  
 GEN406R029 
 synonymous_variant 
 c.2103C>G 
 p.Leu701%3D 
 Unknown 
  
  
 GEN406R030 
 missense_variant 
 c.5672C>T 
 p.Thr1891Ile 
 Unknown 
  
  
 GEN406R031 
 missense_variant 
 c.7673G>A 
 p.Arg2558His 
 De novo 
  
 Simplex 
 GEN406R032 
 missense_variant 
 c.7448C>T 
 p.Ser2483Leu 
 De novo 
  
  
 GEN406R033 
 missense_variant 
 c.1675T>G 
 p.Ser559Ala 
 De novo 
  
  
 GEN406R034 
 stop_gained 
 c.148C>T 
 p.Arg50Ter 
 De novo 
  
  
 GEN406R035 
 synonymous_variant 
 c.2466C>G 
 p.Thr822%3D 
 De novo 
  
  
 GEN406R036 
 synonymous_variant 
 c.1077C>T 
 p.Pro359%3D 
 De novo 
  
 Simplex 
 GEN406R037 
 missense_variant 
 c.851T>G 
 p.Val284Gly 
 De novo 
  
  
 GEN406R038 
 frameshift_variant 
 c.1807+5499_1807+5500insTA 
  
 De novo 
  
 Simplex 
 GEN406R039 
 missense_variant 
 c.8713C>T 
 p.Arg2905Cys 
 De novo 
  
 Simplex 
 GEN406R040 
 missense_variant 
 c.3380C>T 
 p.Thr1127Met 
 De novo 
  
  
  et al.  

Common

Variant ID
Polymorphism
SNP ID
Allele Change
Residue Change
Population Origin
Population Stage
Author, Year
 GEN406C001 
 intron_variant 
 rs9804190 
 c.1807+464G>A;c.4387+464G>A;c.4408+464G>A;c.4432+464G>A;c.4417+464G>A;c.4366+464G>A;c.4339+464G>A;c. 
  
 Two independent case-control samples of European origin (NIMH sample, 413 cases and 563 controls; German sample, 772 cases and 876 controls) 
 Discovery 
 GEN406C002 
 intron_variant 
 rs10994336 
 c.97-140415G>A;c.64-140415G>A 
 minor allele, T 
 4,387 cases and 6,209 controls from combined WTCCC, STEP-UCL and ED-DUB-STEP2 studies 
 Discovery 
 GEN406C003 
 intron_variant 
 rs1938526 
 c.96+74561T>C;c.63+31840T>C 
 minor allele, G 
 4,387 cases and 6,209 controls from combined WTCCC, STEP-UCL and ED-DUB-STEP2 studies 
 Discovery 
 GEN406C004 
 intron_variant 
 rs9804190 
 c.1807+464G>A;c.4387+464G>A;c.4408+464G>A;c.4432+464G>A;c.4417+464G>A;c.4366+464G>A;c.4339+464G>A;c. 
  
 Discovery: German samples (745 cases, 830 controls) 
 Replication (German discovery cohort of 745 cases, 830 controls) 
 GEN406C005 
 intron_variant 
 rs10994336 
 c.97-140415G>A;c.64-140415G>A 
 C/T 
 Discovery: German samples (745 cases, 830 controls) and NIMH Waves 1-4 samples (457 cases, 562 controls); replication: NIMH Wave 5 (466 cases, 212 controls) 
 Replication 
 GEN406C006 
 intron_variant 
 rs10761482 
 c.97-45940A>G;c.64-45940A>G;c.115-45940A>G 
  
 Discovery, Norwegian sample of 201 SCZ cases and 305 controls (TOP study) 
 Discovery 
 GEN406C007 
 intron_variant 
 rs10761482 
 c.97-45940A>G;c.64-45940A>G;c.115-45940A>G 
  
 Replication, European sample of 2663 cases and 13,780 control subjects (SGENE-plus study) 
 Replication 
 GEN406C008 
 intron_variant 
 rs10994359 
 c.96+152837A>G;c.63+110116A>G 
 C/T 
 16,374 cases with schizophrenia, schizoaffective disorder or bipolar disorder and 14,044 controls 
 Discovery 
 GEN406C009 
 intron_variant 
 rs9804190 
 c.1807+464G>A;c.4387+464G>A;c.4408+464G>A;c.4432+464G>A;c.4417+464G>A;c.4366+464G>A;c.4339+464G>A;c. 
  
 208 SCZ patients, 64 controls 
 Discovery 
 GEN406C010 
 intron_variant 
 rs9804190 
 c.1807+464G>A;c.4387+464G>A;c.4408+464G>A;c.4432+464G>A;c.4417+464G>A;c.4366+464G>A;c.4339+464G>A;c. 
  
 Replication: NIMH Wave 5 (466 cases, 212 controls) 
 Replication [NIMH Wave 5 (466 cases, 212 controls)] 
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
10
Deletion
 1
 
10
Duplication
 3
 
10
Deletion
 1
 
10
Duplication
 1
 
10
Deletion-Duplication
 5
 

No Animal Model Data Available


Interactor Symbol Interactor Name Interactor Organism Entrez ID Uniprot ID Interaction Type Evidence Reference
ARHGAP22 Rho GTPase activating protein 22 58504 Q7Z5H3 IP; LC-MS/MS
Huttlin EL , et al. 2015
C10ORF47 proline and serine-rich protein 2 254427 Q86WR7 IP; LC-MS/MS
Huttlin EL , et al. 2015
C16ORF70 chromosome 16 open reading frame 70 80262 Q9BSU1 IP; LC-MS/MS
Huttlin EL , et al. 2015
CDH1 cadherin 1, type 1, E-cadherin (epithelial) 999 P12830 GST
Kizhatil K , et al. 2007
CDH5 Cadherin-5 1003 P33151 IP/WB; Co-localization
Cadwell CM , et al. 2015
CHL1 cell adhesion molecule with homology to L1CAM (close homolog of L1) 10752 O00533 IP; LC-MS/MS
Huttlin EL , et al. 2015
CNGB1 cyclic nucleotide gated channel beta 1 1258 Q14028 IP/WB
Kizhatil K , et al. 2009
DAG1 dystroglycan 1 (dystrophin-associated glycoprotein 1) 1605 Q14118 GST
Ayalon G , et al. 2008
DMD dystrophin 1756 P11532 GST
Ayalon G , et al. 2008
DOK4 Docking protein 4 55715 Q8TEW6 IP; LC-MS/MS
Huttlin EL , et al. 2015
FEZ1 fasciculation and elongation protein zeta 1 (zygin I) 9638 Q99689 IP; LC-MS/MS
Huttlin EL , et al. 2015
FLNC filamin C, gamma 2318 Q14315 Y2H; GST; IP/WB
Maiweilidan Y , et al. 2011
HIF1AN hypoxia inducible factor 1, alpha subunit inhibitor 55662 Q9NWT6 IP; LC-MS/MS
Huttlin EL , et al. 2015
HOOK1 hook homolog 1 (Drosophila) 51361 Q9UJC3 Y2H; IP/WB
Weimer JM , et al. 2005
KCNQ2 potassium voltage-gated channel, KQT-like subfamily, member 2 3785 O43526 in silico target prediction
Rasmussen HB , et al. 2007
KCNQ3 potassium voltage-gated channel, KQT-like subfamily, member 3 3786 O43525 in silico target prediction
Rasmussen HB , et al. 2007
LILRB3 Leukocyte immunoglobulin-like receptor subfamily B member 3 102725035 O75022-2 IP; LC-MS/MS
Huttlin EL , et al. 2015
MAGED1 melanoma antigen family D, 1 9500 Q9Y5V3 IP/WB; GST
Kumar S , et al. 2011
MAPK6 mitogen-activated protein kinase 6 5597 Q16659 Y2H
Bandyopadhyay S , et al. 2010
MAPK8IP1 mitogen-activated protein kinase 8 interacting protein 1 9479 Q6NUQ9 IP; LC-MS/MS
Huttlin EL , et al. 2015
MAPRE3 microtubule-associated protein, RP/EB family, member 3 22924 Q9UPY8 GST; Surface plasmon resonance (SPR)
Leterrier C , et al. 2011
MIR34A microRNA 34a 407040 N/A Luciferase reporter assay
Bavamian S , et al. 2015
NEXN Nexilin 91624 Q0ZGT2 IP; LC-MS/MS
Huttlin EL , et al. 2015
PALM2 paralemmin 2 114299 Q8IXS6 IP; LC-MS/MS
Huttlin EL , et al. 2015
PLEC plectin 5339 Q15149 Y2H; GST; IP/WB
Maiweilidan Y , et al. 2011
PWP1 PWP1 homolog (S. cerevisiae) 11137 Q13610 IP; LC-MS/MS
Huttlin EL , et al. 2015
RAPGEF5 Rap guanine nucleotide exchange factor (GEF) 5 9771 A8MQ07 IP; LC-MS/MS
Huttlin EL , et al. 2015
RHBG Rh family, B glycoprotein (gene/pseudogene) 57127 Q9H310 Y2H
Lopez C , et al. 2004
SCN8A sodium channel, voltage gated, type VIII, alpha subunit 6334 Q9UQD0 in silico target prediction
Gasser A , et al. 2012
SMAD2 SMAD family member 2 4087 Q15796 Y2H
Colland F , et al. 2004
SMAD3 SMAD family member 3 4088 P84022 Y2H
Colland F , et al. 2004
Tiam1 T-cell lymphoma invasion and metastasis 1 21844 Q60610 IP/WB; in vitro binding assay
Bourguignon LY , et al. 2000
UBC ubiquitin C 7316 P63279 MS
Denis NJ , et al. 2007
UXS1 UDP-glucuronate decarboxylase 1 80146 Q8NBZ7 IP; LC-MS/MS
Huttlin EL , et al. 2015
APC adenomatous polyposis coli 324 P25054 HITS-CLIP
Preitner N , et al. 2014
Fadd Fas (TNFRSF6)-associated via death domain 14082 Q61160 IP/WB; GST
Del Rio M , et al. 2003
Fas Fas(TNF receptor superfamily member 6) 14102 P25446 Y2H; IP/WB; GST
Del Rio M , et al. 2003
FMR1 fragile X mental retardation 1 14265 P35922 HITS-CLIP
Darnell JC , et al. 2011
L1cam L1 cell adhesion molecule 16728 Q6PGJ3 IP/WB
Valente P , et al. 2016
Mapre1 microtubule-associated protein, RP/EB family, member 1 13589 Q61166 GST; Surface plasmon resonance (SPR)
Leterrier C , et al. 2011
Pik3r1 phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha) 18708 P26450 IP/WB; GST
Ignatiuk A , et al. 2005
Sptbn4 spectrin beta, non-erythrocytic 4 80297 E9PZC2 IP/WB
Komada M and Soriano P 2002
Gja1 gap junction protein, alpha 1 24392 P08050 IP/WB
Sato PY , et al. 2011
Kcnc1 potassium voltage gated channel, Shaw-related subfamily, member 1 25327 P25122 IP/WB
Devaux J , et al. 2003
KCNQ2 potassium voltage-gated channel, KQT-like subfamily, member 2 3785 O43526 IP/WB; Co-localization
Xu M and Cooper EC 2015
KCNQ3 potassium voltage-gated channel, KQT-like subfamily, member 3 3786 O43525 IP/WB; Co-localization
Xu M and Cooper EC 2015
Nde1 nudE neurodevelopment protein 1 83836 Q9ES39 IP; LC-MS/MS; IP/WB
Kuijpers M , et al. 2016
Ndel1 nudE neurodevelopment protein 1-like 1 170845 Q78PB6 IP; LC-MS/MS; IP/WB; Co-localization
Kuijpers M , et al. 2016
Nfasc neurofascin 116690 P97685 Affinity chromatography; MS; in vitro binding assay
Kriebel M , et al. 2012
Nrcam neuronal cell adhesion molecule 497815 Q6PW34 IP/WB; in vitro binding assay
Davis JQ and Bennett V 1994
Pkp2 plakophilin 2 287925 N/A IP/WB
Sato PY , et al. 2011
Scn1b sodium channel, voltage-gated, type I, beta 29686 Q00954 IP/WB
Malhotra JD , et al. 2002
SCN2A sodium channel, voltage-gated, type II, alpha subunit 6326 Q99250 GST; IP/WB
Bouzidi M , et al. 2002
SCN2A sodium channel, voltage-gated, type II, alpha subunit 6326 Q99250 IP/WB
Xu M and Cooper EC 2015
SCN2A sodium channel, voltage-gated, type II, alpha 1 24766 P04775 IP/WB
McEwen DP , et al. 2004
Scn5a sodium channel, voltage-gated, type V, alpha subunit 25665 P15389 GST; Overlay binding assay; IP/WB
Mohler PJ , et al. 2004
Scnn1b sodium channel, nonvoltage-gated 1, beta 24767 P37090 IP/WB
Malhotra JD , et al. 2002

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