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Relevance to Autism

Rare de novo variants in the ALDH1L1 gene have been identified in ASD probands, including a de novo missense variant (p.Asn900His) in a proband from the Simons Simplex Collection (Iossifov et al., 2014; Yuen et al. 2017; Turner et al., 2017; Satterstrom et al., 2020), while a paternally-inherited loss-of-function variant in this gene was identified in an ASD proband from a multiplex family from the iHART cohort (Ruzzo et al. 2019). Functional assessment of the ASD-associated p.Asn900His missense variant in Drosophila using a rescue-based strategy in Macrogliese et al., 2022 demonstrated that humanized flies carrying the ALDH1L1-p.Asn900His mutation displayed a significant reduction in courtship and an increase in grooming behavior compared to the humanized reference fly or the TG4 mutant alone, potentially indicating that this variant acts as some sort of gain-of-function allele.

Molecular Function

The protein encoded by this gene catalyzes the conversion of 10-formyltetrahydrofolate, nicotinamide adenine dinucleotide phosphate (NADP+), and water to tetrahydrofolate, NADPH, and carbon dioxide. The encoded protein belongs to the aldehyde dehydrogenase family. Loss of function or expression of this gene is associated with decreased apoptosis, increased cell motility, and cancer progression.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism
ASD
Support
Inherited and De Novo Genetic Risk for Autism Impacts Shared Networks.
ASD
Support
Genomic Patterns of De Novo Mutation in Simplex Autism
ASD
Support
Whole genome sequencing resource identifies 18 new candidate genes for autism spectrum disorder
ASD
Recent Recommendation
Drosophila functional screening of de novo variants in autism uncovers damaging variants and facilitates discovery of rare neurodevelopmental diseases
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1317R001 
 missense_variant 
 c.2698A>C 
 p.Asn900His 
 De novo 
  
 Simplex 
 GEN1317R002 
 intron_variant 
 c.1374+221G>A 
  
 De novo 
  
 Simplex 
 GEN1317R003 
 intron_variant 
 c.1502+46C>G 
  
 De novo 
  
 Multiplex 
 GEN1317R004 
 intron_variant 
 c.1107-1516C>T 
  
 De novo 
  
 Simplex 
 GEN1317R005 
 intron_variant 
 c.1106+3997G>C 
  
 De novo 
  
 Multiplex 
 GEN1317R006 
 intron_variant 
 c.1107-2296T>A 
  
 De novo 
  
 Simplex 
 GEN1317R007 
 intron_variant 
 c.7+1042C>G 
  
 De novo 
  
 Simplex 
 GEN1317R008 
 intron_variant 
 c.889-185G>T 
  
 De novo 
  
 Simplex 
 GEN1317R009 
 stop_gained 
 c.51C>A 
 p.Cys17Ter 
 Familial 
 Paternal 
 Multiplex 
 GEN1317R010 
 splice_region_variant 
 c.2348-4G>T 
  
 De novo 
  
  
 GEN1317R011 
 missense_variant 
 c.701T>C 
 p.Ile234Thr 
 De novo 
  
 Simplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
3
Deletion
 1
 
3
Deletion-Duplication
 5
 
3
Duplication
 1
 
3
Deletion-Duplication
 16
 

No Animal Model Data Available

No PIN Data Available
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