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Relevance to Autism

This gene was identified by TADA (transmission and de novo association) analysis of a combined dataset from the Simons Simplex Collection (SSC) and the Autism Sequencing Consortium (ASC) as a gene strongly enriched for variants likely to affect ASD risk with a false discovery rate (FDR) of <0.1 (Sanders et al., 2015); among the variants identified in this gene was one de novo loss-of-function (LoF) variant.

Molecular Function

Binds to type II regulatory subunits of protein kinase A. Scaffolding protein that assembles several protein kinases and phosphatases on the centrosome and Golgi apparatus. May be required to maintain the integrity of the Golgi apparatus. Isoform4is associated with the N-methyl-D-aspartate receptor and is specifically found in the neuromuscular junction (NMJ) as well as in neuronal synapses, suggesting a role in the organization of postsynaptic specializations.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Insights into Autism Spectrum Disorder Genomic Architecture and Biology from 71 Risk Loci.
ASD
Support
Synaptic, transcriptional and chromatin genes disrupted in autism.
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Inherited and De Novo Genetic Risk for Autism Impacts Shared Networks.
ASD
Support
Meta-analysis of 2,104 trios provides support for 10 new genes for intellectual disability
ID
Support
The contribution of de novo coding mutations to autism spectrum disorder
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN761R001 
 stop_gained 
 c.9880C>T 
 p.Arg3294Ter 
 De novo 
  
 Simplex 
 GEN761R002 
 missense_variant 
 c.5787T>A 
 p.Asp1929Glu 
 De novo 
  
  
 GEN761R003 
 missense_variant 
 c.5036G>A 
 p.Arg1679His 
 De novo 
  
 Simplex 
 GEN761R004 
 frameshift_variant 
 c.6005_6008del 
 p.Met2002ArgfsTer4 
 De novo 
  
  
 GEN761R005 
 stop_gained 
 c.3574C>T 
 p.Gln1192Ter 
 De novo 
  
 Multiplex 
 GEN761R006 
 frameshift_variant 
 c.7561_7564del 
 p.Gln2521Ter 
 Familial 
 Paternal 
 Multiplex 
 GEN761R007 
 splice_site_variant 
 c.306+1G>A 
  
 De novo 
  
  
 GEN761R008 
 frameshift_variant 
 c.1836_1839del 
 p.Asp612GlufsTer10 
 De novo 
  
 Simplex 
 GEN761R009 
 missense_variant 
 c.4888A>G 
 p.Ile1630Val 
 De novo 
  
 Multiplex 
 GEN761R010 
 missense_variant 
 c.7954G>A 
 p.Gly2652Ser 
 De novo 
  
 Simplex 
 GEN761R011 
 missense_variant 
 c.1370T>A 
 p.Met457Lys 
 De novo 
  
  
 GEN761R012 
 missense_variant 
 c.7666G>T 
 p.Val2556Phe 
 De novo 
  
  
 GEN761R013 
 missense_variant 
 c.7309C>T 
 p.Arg2437Cys 
 De novo 
  
 Simplex 
 GEN761R014 
 missense_variant 
 c.6085G>A 
 p.Asp2029Asn 
 De novo 
  
 Simplex 
 GEN761R015 
 stop_gained 
 c.736C>T 
 p.Gln246Ter 
 Familial 
 Paternal 
 Multiplex 
 GEN761R016 
 stop_gained 
 c.2818G>T 
 p.Glu940Ter 
 Familial 
 Maternal 
 Multiplex 
 GEN761R017 
 frameshift_variant 
 c.5627_5630del 
 p.Thr1876SerfsTer2 
 Familial 
 Paternal 
 Multiplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
7
Deletion
 2
 
7
Duplication
 3
 
7
Deletion
 2
 
7
Deletion
 7
 

No Animal Model Data Available

 

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