Summary Statistics:
ASD Reports: 29
Recent Reports: 2
Annotated variants: 110
Associated CNVs: 3
Evidence score: 4
Gene Score: 3S
Relevance to Autism
Novel de novo variants in the AHDC1 gene (one frameshift, one missense variant predicted to be benign) were identified in ASD probands from the Simons Simplex Collection in Iossifov et al., 2014. Exome sequencing of 2157 cases with intellectual disability or developmental delay in Yang et al., 2016 identified seven proband-patient trios with de novo AHDC1 variants; probands typically presented with developmental delay, intellectual disability, absent or limited speech, hypotonia, dysmorphic features, brain abnormalities, failure to thrive/feeding difficulties, and ataxia/gait abnormalities, and two of the seven probands were additionally diagnosed with autism based on DSM-IV or DSM-V criteria.
Molecular Function
This gene encodes a protein containing two AT-hooks, which likely function in DNA binding. Mutations in this gene were found in individuals with Xia-Gibbs syndrome (OMIM 615829), a syndrome characterized by intellectual disability, expressive language delay, hypotonia, and obstructive sleep apnea (Xia et al., 2014).
References
Primary
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
Xia-Gibbs Syndrome in adulthood: a case report with insight into the natural history of the condition.
Xia-Gibbs syndrome
Support
Mutational Landscape of Autism Spectrum Disorder Brain Tissue
ASD
Support
MATR3 disruption in human and mouse associated with bicuspid aortic valve, aortic coarctation and patent ductus arteriosus.
ASD, DD
Congenital heart defects
Support
Integrating de novo and inherited variants in 42
ASD
Support
Variable Clinical Manifestations of Xia-Gibbs syndrome: Findings of Consecutively Identified Cases at a Single Children's Hospital.
Xia-Gibbs syndrome
ASD
Support
Integration of Artificial Intelligence, Blockchain, and Wearable Technology for Chronic Disease Management: A New Paradigm in Smart Healthcare
DD, ID, epilepsy/seizures
ASD
Support
De novo truncating mutations in AHDC1 in individuals with syndromic expressive language delay, hypotonia, and sleep apnea.
DD, ID
Support
Complex Diagnostics of Non-Specific Intellectual Developmental Disorder
DD, ID
Support
Exome Pool-Seq in neurodevelopmental disorders.
ID
Behavioral anomalies, microcephaly
Support
A single center experience with publicly funded clinical exome sequencing for neurodevelopmental disorders or multiple congenital anomalies
DD, ID
Epilepsy/seizures
Support
Genotype-phenotype spectrum and correlations in Xia-Gibbs syndrome: Report of five novel cases and literature review
Xia-Gibbs syndrome, DD, ID
ASD, ADHD, epilepsy/seizures
Support
Genomic diagnosis for children with intellectual disability and/or developmental delay.
ID
Support
Focusing on Autism Spectrum Disorder in Xia-Gibbs Syndrome: Description of a Female with High Functioning Autism and Literature Review
Xia-Gibbs syndrome, ASD
DD, epilepsy/seizures
Support
Genetic investigation of syndromic forms of obesity
ASD, DD
Support
Prevalence and architecture of de novo mutations in developmental disorders
Developmental disorders
Support
Phenotypic and protein localization heterogeneity associated with AHDC1 pathogenic protein-truncating alleles in Xia-Gibbs syndrome
Xia-Gibbs syndrome, DD, ID
ASD, epilepsy/seizures
Support
First reported cases with Xia-Gibbs syndrome from India harboring novel variants in AHDC1
Xia-Gibbs syndrome, DD
Autistic features, stereotypy, epilepsy/seizures
Support
The genomic landscape of balanced cytogenetic abnormalities associated with human congenital anomalies.
DD
Support
DD, ID
Epilepsy/seizures, autistic features
Support
Large-scale targeted sequencing identifies risk genes for neurodevelopmental disorders
ASD, DD
Support
Trio-based exome sequencing reveals a high rate of the de novo variants in intellectual disability
ID
Support
Meta-analysis of 2,104 trios provides support for 10 new genes for intellectual disability
ID
Recent Recommendation
The phenotypic spectrum of Xia-Gibbs syndrome.
Xia-Gibbs syndrome
ASD
Recent Recommendation
De novo truncating variants in the AHDC1 gene encoding the AT-hook DNA-binding motif-containing protein 1 are associated with intellectual disabili...
DD, ID
ASD
GEN824R001
frameshift_variant
c.1758dup
p.Arg587ThrfsTer56
De novo
Simplex
GEN824R002
missense_variant
c.1541C>T
p.Ser514Leu
De novo
Simplex
GEN824R003
frameshift_variant
c.1945del
p.Ala649ProfsTer83
De novo
GEN824R004
frameshift_variant
c.2529_2545del
p.Asp845ArgfsTer40
De novo
GEN824R005
frameshift_variant
c.1881del
p.Gln627HisfsTer105
De novo
GEN824R006
frameshift_variant
c.1122dup
p.Gly375ArgfsTer3
De novo
GEN824R007
frameshift_variant
c.3809del
p.Gln1270ArgfsTer75
De novo
GEN824R008
frameshift_variant
c.2373_2374del
p.Cys791TrpfsTer57
De novo
GEN824R009
stop_gained
c.1480A>T
p.Lys494Ter
De novo
GEN824R010
frameshift_variant
c.2373_2374del
p.Cys791TrpfsTer57
De novo
Simplex
GEN824R011
frameshift_variant
c.2898del
p.Tyr967ThrfsTer175
De novo
Simplex
GEN824R012
frameshift_variant
c.2373_2374del
p.Cys791TrpfsTer57
De novo
Simplex
GEN824R013
frameshift_variant
c.2547del
p.Ser850ProfsTer82
De novo
Simplex
GEN824R014
translocation
De novo
Simplex
GEN824R015
frameshift_variant
c.1402dup
p.Cys468LeufsTer49
De novo
GEN824R016
frameshift_variant
c.2229del
p.Ser744ProfsTer188
De novo
GEN824R017
stop_gained
c.3814C>T
p.Arg1272Ter
De novo
GEN824R018
stop_gained
c.2644C>T
p.Gln882Ter
De novo
GEN824R019
frameshift_variant
c.1453del
p.Leu485TrpfsTer14
De novo
GEN824R020
frameshift_variant
c.1162del
p.Asp388IlefsTer64
De novo
GEN824R021
stop_gained
c.1706C>T
p.Ala569Val
De novo
GEN824R022
stop_gained
c.2062C>T
p.Arg688Ter
De novo
GEN824R023
stop_gained
c.2908C>T
p.Gln970Ter
De novo
GEN824R024
frameshift_variant
c.1624del
p.Ile542PhefsTer43
De novo
GEN824R025
stop_gained
c.2908C>T
p.Gln970Ter
De novo
GEN824R026
stop_gained
c.784C>T
p.Gln262Ter
De novo
GEN824R027
stop_gained
c.3989C>A
p.Ser1330Ter
De novo
GEN824R028
frameshift_variant
c.1348del
p.Glu450SerfsTer2
De novo
GEN824R029
stop_gained
c.1706C>T
p.Ala569Val
De novo
GEN824R030
frameshift_variant
c.1306_1307del
p.Pro436ThrfsTer80
De novo
GEN824R031
stop_gained
c.2706C>G
p.Ser902Arg
De novo
GEN824R032
stop_gained
c.2473C>T
p.Gln825Ter
De novo
GEN824R033
frameshift_variant
c.3427dup
p.Leu1143ProfsTer23
De novo
GEN824R034
frameshift_variant
c.1818dup
p.Asp607ArgfsTer36
De novo
GEN824R035
stop_gained
c.692C>T
p.Pro231Leu
De novo
GEN824R036
copy_number_loss
Unknown
GEN824R037
stop_gained
c.979C>T
p.Gln327Ter
Unknown
GEN824R038
frameshift_variant
c.4288dup
p.Gln1430ProfsTer51
De novo
GEN824R039
missense_variant
c.3805C>T
p.Arg1269Trp
De novo
GEN824R040
missense_variant
c.1819G>A
p.Asp607Asn
De novo
GEN824R041
missense_variant
c.1231G>A
p.Gly411Ser
De novo
GEN824R042
missense_variant
c.2866C>T
p.Arg956Cys
Unknown
GEN824R043
missense_variant
c.2002C>T
p.Arg668Cys
Unknown
GEN824R044
missense_variant
c.3331C>T
p.Arg1111Trp
Unknown
GEN824R045
frameshift_variant
c.2188del
p.Glu730ArgfsTer2
Unknown
GEN824R046
frameshift_variant
c.677_680dup
p.Glu228ProfsTer4
Unknown
GEN824R047
stop_gained
c.2448C>A
p.Tyr816Ter
Unknown
GEN824R048
missense_variant
c.2495G>A
p.Arg832His
Unknown
GEN824R049
missense_variant
c.3331C>T
p.Arg1111Trp
Unknown
GEN824R050
frameshift_variant
c.807del
p.Glu270SerfsTer19
De novo
GEN824R051
frameshift_variant
c.1122del
p.Pro376LeufsTer76
De novo
GEN824R052
frameshift_variant
c.1788_1789del
p.Gln598AlafsTer44
De novo
GEN824R053
frameshift_variant
c.2248_2249del
p.Leu750ValfsTer17
De novo
GEN824R054
stop_gained
c.2773C>T
p.Arg925Ter
De novo
GEN824R055
stop_gained
c.1759C>T
p.Arg587Ter
De novo
GEN824R056
frameshift_variant
c.3019_3020insAGCCT
p.Ser1007LysfsTer137
De novo
GEN824R057
stop_gained
c.2188G>T
p.Glu730Ter
De novo
GEN824R058
stop_gained
c.2188G>T
p.Glu730Ter
De novo
GEN824R059
frameshift_variant
c.2520del
p.Arg841AlafsTer91
De novo
GEN824R060
frameshift_variant
c.643dup
p.Ser215LysfsTer16
De novo
GEN824R061
stop_gained
c.979C>T
p.Gln327Ter
De novo
GEN824R062
frameshift_variant
c.1122dup
p.Gly375ArgfsTer3
De novo
GEN824R063
frameshift_variant
c.1446del
p.Val483TyrfsTer16
De novo
GEN824R064
stop_gained
c.1759C>T
p.Arg587Ter
De novo
GEN824R065
stop_gained
c.2188G>T
p.Glu730Ter
De novo
GEN824R066
stop_gained
c.2188G>T
p.Glu730Ter
De novo
GEN824R067
frameshift_variant
c.2373_2374del
p.Cys791TrpfsTer57
De novo
GEN824R068
stop_gained
c.2473C>T
p.Gln825Ter
De novo
GEN824R069
frameshift_variant
c.2849del
p.Pro950ArgfsTer192
De novo
GEN824R070
stop_gained
c.2932C>T
p.Gln978Ter
De novo
GEN824R071
stop_gained
c.3204C>G
p.Tyr1068Ter
De novo
GEN824R072
stop_gained
c.3446C>T
p.Thr1149Ile
De novo
GEN824R073
frameshift_variant
c.4438del
p.Glu1480LysfsTer67
De novo
GEN824R074
frameshift_variant
c.514dup
p.Ser172LysfsTer8
De novo
Simplex
GEN824R075
stop_gained
c.2062C>T
p.Arg688Ter
De novo
Simplex
GEN824R076
frameshift_variant
c.1814_1819delinsT
p.Ala605ValfsTer36
De novo
Simplex
GEN824R077
missense_variant
c.139C>T
p.Pro47Ser
De novo
GEN824R078
missense_variant
c.1459C>T
p.Arg487Trp
De novo
GEN824R079
missense_variant
c.1610G>A
p.Gly537Asp
De novo
GEN824R080
missense_variant
c.1642G>A
p.Gly548Ser
De novo
GEN824R081
missense_variant
c.1646G>A
p.Arg549His
De novo
GEN824R082
missense_variant
c.1819G>A
p.Asp607Asn
De novo
GEN824R083
missense_variant
c.2374G>C
p.Gly792Arg
De novo
GEN824R084
missense_variant
c.4042T>C
p.Ser1348Pro
De novo
GEN824R085
missense_variant
c.4370A>G
p.Asp1457Gly
De novo
GEN824R086
missense_variant
c.4432C>T
p.Pro1478Ser
Unknown
GEN824R087
synonymous_variant
c.648C>T
p.Pro216%3D
Unknown
GEN824R088
synonymous_variant
c.2649G>A
p.Arg883%3D
Unknown
GEN824R089
synonymous_variant
c.4065C>T
p.Ser1355%3D
Unknown
GEN824R090
frameshift_variant
c.1481_1482del
p.Lys494SerfsTer22
De novo
GEN824R091
stop_gained
c.994C>T
p.Gln332Ter
De novo
Simplex
GEN824R092
frameshift_variant
c.1206del
p.Arg403AlafsTer49
De novo
Simplex
GEN824R093
frameshift_variant
c.1758del
p.Lys586AsnfsTer37
De novo
Simplex
GEN824R094
frameshift_variant
c.2192dup
p.Asp732ArgfsTer36
De novo
Multiplex
GEN824R095
stop_gained
c.2188G>T
p.Glu730Ter
De novo
Simplex
GEN824R096
frameshift_variant
c.4289dup
p.Ala1432GlyfsTer49
De novo
GEN824R097
frameshift_variant
c.1446del
p.Val483TyrfsTer16
De novo
Simplex
GEN824R098
frameshift_variant
c.1102_1114del
p.Cys368AlafsTer80
De novo
Multiplex
GEN824R099
frameshift_variant
c.1181_1182del
p.Cys394SerfsTer122
De novo
Simplex
GEN824R100
synonymous_variant
c.4431G>A
p.Pro1477%3D
De novo
GEN824R101
synonymous_variant
c.3849G>A
p.Lys1283%3D
De novo
GEN824R102
inframe_insertion
c.3265_3270dup
p.Ser1090_Ser1091dup
De novo
GEN824R103
missense_variant
c.3233C>T
p.Ala1078Val
De novo
GEN824R104
synonymous_variant
c.2526G>A
p.Ser842%3D
De novo
Simplex
GEN824R105
frameshift_variant
c.1122dup
p.Gly375ArgfsTer3
De novo
GEN824R106
stop_gained
c.877G>T
p.Glu293Ter
Unknown
Not maternal
GEN824R107
missense_variant
c.1639C>T
p.Arg547Cys
De novo
GEN824R108
missense_variant
c.244G>A
p.Asp82Asn
Unknown
Simplex
GEN824R109
stop_gained
c.3814C>T
p.Arg1272Ter
De novo
GEN824R110
frameshift_variant
c.3313del
p.Ala1105LeufsTer37
Unknown
No Common Variants Available
No Animal Model Data Available
No Interactions Available