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Relevance to Autism

De novo missense variants in the ADGRL1 gene were identified in two ASD probands from the Autism Sequencing Consortium in De Rubeis et al., 2014, while a rare de novo nonsense variant in this gene was identified in an ASD proband from the Study of Autism Genetics Exploration (SAGE) collection in Guo et al., 2019. Vitobello et al., 2022 described ten individuals from 9 families with heterozygous variants in the ADGRL1 gene, including in the ASD proband originally reported in Guo et al., 2019, that presented with variable neurodevelopmental features includigng developmental delay, intellectual disability, autism spectrum disorder, ADHD, and epilepsy; ADGRL1 variants expressed in vitro in mouse neuroblastoma cells displayed abnormalities in ligand-induced regulation of intracellular calcium influx that were consistent with haploinsufficiency. Furthermore, Vitobello et al., 2022 showed that mice carrying a heterozygous Adgrl1 null allele on a non-permissive background exhibited neurological and developmental abnormalities, whereas Agrl1 -/- mice on a permissive background demonstrated stereotypic behaviors, sexual dysfunction, bimodal extremes of locomotion, augmented startle reflex, and attenuated pre-pulse inhibition.

Molecular Function

Calcium-independent receptor of high affinity for alpha-latrotoxin, an excitatory neurotoxin present in black widow spider venom which triggers massive exocytosis from neurons and neuroendocrine cells. Receptor for TENM2 that mediates heterophilic synaptic cell-cell contact and postsynaptic specialization. Receptor probably implicated in the regulation of exocytosis.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Synaptic, transcriptional and chromatin genes disrupted in autism.
ASD
Support
Genome sequencing identifies multiple deleterious variants in autism patients with more severe phenotypes.
ASD
Support
Insights into Autism Spectrum Disorder Genomic Architecture and Biology from 71 Risk Loci.
ASD
Support
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Recent Recommendation
ADGRL1 haploinsufficiency causes a variable spectrum of neurodevelopmental disorders in humans and alters synaptic activity and behavior in a mouse model
DD, ID
ASD, ADHD, epilepsy/seizures

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1340R001 
 missense_variant 
 c.1637G>C 
 p.Ser546Thr 
 De novo 
  
  
 GEN1340R002 
 missense_variant 
 c.1037A>G 
 p.Asn346Ser 
 De novo 
  
  
 GEN1340R003 
 synonymous_variant 
 c.2742C>T 
 p.Ile914%3D 
 De novo 
  
 Simplex 
 GEN1340R004 
 intron_variant 
 c.1526-6C>A 
  
 De novo 
  
  
 GEN1340R005 
 stop_gained 
 c.26G>A 
 p.Trp9Ter 
 De novo 
  
 Multiplex 
 GEN1340R006 
 missense_variant 
 c.3013T>C 
 p.Trp1005Arg 
 De novo 
  
 Simplex 
 GEN1340R007 
 stop_gained 
 c.3406C>T 
 p.Arg1136Ter 
 De novo 
  
 Simplex 
 GEN1340R008 
 stop_gained 
 c.834G>A 
 p.Trp278Ter 
 Familial 
 Paternal 
 Multiplex 
 GEN1340R009 
 missense_variant 
 c.3455T>C 
 p.Met1152Thr 
 De novo 
  
 Simplex 
 GEN1340R010 
 missense_variant 
 c.3491C>T 
 p.Ser1164Phe 
 De novo 
  
 Simplex 
 GEN1340R011 
 frameshift_variant 
 c.2064dup 
 p.Glu689ArgfsTer113 
 De novo 
  
 Simplex 
 GEN1340R012 
 stop_gained 
 c.3532C>T 
 p.Arg1178Ter 
 De novo 
  
 Simplex 
 GEN1340R013 
 missense_variant 
 c.1037A>G 
 p.Tyr346Cys 
 Familial 
 Paternal 
 Multiplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
19
Deletion-Duplication
 18
 
19
Deletion
 5
 
19
Duplication
 1
 
19
Duplication
 1
 
19
Deletion
 2
 
19
Deletion
 2
 
19
Duplication
 2
 
19
Deletion-Duplication
 6
 
19
Duplication
 1
 
19
Duplication
 1
 

No Animal Model Data Available

No PIN Data Available
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