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Relevance to Autism

Meta-analysis of CNV data from 11,614 affected individuals with NDDs and 4,031 controls individuals from the SFARI database, followed by the identification of driver risk genes within identified NDD-risk CNV loci, in Azidane et al., 2024 found that ACAP2 was a high confidence NDD-risk gene located in the 3q29 locus; furthermore, deletions of this gene were found to be transmitted to all children with ASD in four families from the iHart cohort in the same report. De novo missense variants in ACAP2 have also been identified in ASD probands (Satterstrom et al., 2020; Zhou et al., 2022).

Molecular Function

The protein encoded by this gene is a GTPase-activating protein (GAP) for ADP ribosylation factor 6 (ARF6) that acts upstream of or within the actin filament-based process and is located in membrane ruffles. Bhat et al., 2020 reported that ACAP2 was required to promote tunneling nanotubes and vesicle trafficking in neuronal cell lines.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Identification of novel driver risk genes in CNV loci associated with neurodevelopmental disorders
Neurodevelopmental disorders (NDDs)
ASD
Support
The genetic landscape of autism spectrum disorder in an ancestrally diverse cohort
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Rab35 and its effectors promote formation of tunneling nanotubes in neuronal cells
Support
Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1462R001 
 copy_number_loss 
  
  
 Familial 
 Paternal 
 Multiplex 
 GEN1462R002 
 copy_number_loss 
  
  
 Familial 
 Maternal 
 Simplex 
 GEN1462R003 
 copy_number_loss 
  
  
 Familial 
 Maternal 
 Multiplex 
 GEN1462R004 
 copy_number_loss 
  
  
 Familial 
 Paternal 
 Multiplex 
 GEN1462R005 
 missense_variant 
 c.523C>T 
 p.Leu175Phe 
 De novo 
  
  
 GEN1462R006 
 missense_variant 
 c.2185G>A 
 p.Ala729Thr 
 De novo 
  
  
 GEN1462R007 
 missense_variant 
 c.467C>T 
 p.Thr156Ile 
 De novo 
  
  
 GEN1462R008 
 missense_variant 
 c.208T>G 
 p.Ser70Ala 
 Unknown 
 Not maternal 
 Simplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
3
Duplication
 1
 
3
Duplication
 3
 
3
Duplication
 1
 
3
Duplication
 3
 
3
Duplication
 1
 
3
Duplication
 3
 
3
Deletion
 4
 
3
Deletion
 6
 
3
Duplication
 5
 
3
Deletion-Duplication
 72
 

No Animal Model Data Available

 

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