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Relevance to Autism

Rare de novo variants in the ABL2 gene have been identified in ASD probands, including a de novo missense variant (p.Ala1099Thr) in a proband from the Simons Simplex Collection (Iossifov et al., 2014; Yuen et al., 2017; Turner et al., 2017; Satterstrom et al., 2020), while an maternally-inherited loss-of-function variant in this gene was observed in all four ASD-affected siblings from a multiplex family from the iHART cohort (Ruzzo et al., 2019). Functional assessment of the ASD-associated p.Ala1099Thr missense variant in Drosophila using a rescue-based strategy in Macrogliese et al., 2022 demonstrated that humanized flies carrying the ABL2-p.Ala1099Thr mutation had significantly decreased lifespan compared with reference animals, indicating a reduced ability to rescue TG4 lethality that was consistent with a loss-of-function effect. Previous studies have shown that genetic knock-out of this gene in mice resulted in synapse, dendritic spine, and dendrite arbor loss accompanied by behavioral deficits (Moresco et al., 2005; Sfakianos et al., 2007).

Molecular Function

This gene encodes a member of the Abelson family of nonreceptor tyrosine protein kinases. The protein is highly similar to the c-abl oncogene 1 protein, including the tyrosine kinase, SH2 and SH3 domains, and it plays a role in cytoskeletal rearrangements through its C-terminal F-actin- and microtubule-binding sequences. This gene is expressed in both normal and tumor cells, and is involved in translocation with the ets variant 6 gene in leukemia.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
Genomic Patterns of De Novo Mutation in Simplex Autism
ASD
Support
Whole genome sequencing resource identifies 18 new candidate genes for autism spectrum disorder
ASD
Support
Abl2/Arg controls dendritic spine and dendrite arbor stability via distinct cytoskeletal control pathways
Support
Inhibition of Rho via Arg and p190RhoGAP in the postnatal mouse hippocampus regulates dendritic spine maturation
Support
Abl2:Cortactin Interactions Regulate Dendritic Spine Stability via Control of a Stable Filamentous Actin Pool
Support
Integrin-mediated dendrite branch maintenance requires Abelson (Abl) family kinases
Support
Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism
ASD
Support
Inherited and De Novo Genetic Risk for Autism Impacts Shared Networks.
ASD
Recent Recommendation
Drosophila functional screening of de novo variants in autism uncovers damaging variants and facilitates discovery of rare neurodevelopmental diseases
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1316R001 
 missense_variant 
 c.3295G>A 
 p.Ala1099Thr 
 De novo 
  
 Simplex 
 GEN1316R002 
 intron_variant 
 c.392-869C>T 
  
 De novo 
  
 Multiplex 
 GEN1316R003 
 3_prime_UTR_variant 
 c.*6317C>T 
  
 De novo 
  
 Multiplex 
 GEN1316R004 
 intron_variant 
 c.157+42429A>G 
  
 De novo 
  
 Multiplex 
 GEN1316R005 
 intron_variant 
 c.158-35147A>T 
  
 De novo 
  
 Multiplex 
 GEN1316R006 
 intron_variant 
 c.157+24183T>C 
  
 De novo 
  
 Simplex 
 GEN1316R007 
 3_prime_UTR_variant 
 c.*3602A>G 
  
 De novo 
  
 Simplex 
 GEN1316R008 
 intron_variant 
 c.158-46916A>G 
  
 De novo 
  
 Simplex 
 GEN1316R009 
 frameshift_variant 
 c.2826del 
 p.Pro943GlnfsTer36 
 Familial 
 Maternal 
 Multiplex 
 GEN1316R010 
 missense_variant 
 c.758A>G 
 p.Asp253Gly 
 De novo 
  
 Simplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
1
Duplication
 44
 
1
Duplication
 1
 
1
Deletion
 2
 
1
Deletion
 2
 
1
Deletion
 2
 
1
Deletion
 1
 

No Animal Model Data Available

 

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