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Relevance to Autism

One of the six patients with Bosch-Boonstra-Schaaf optic atrophy syndrome described in Bosch et al., 2014 presented with autism spectrum disorder with marked obsessive-compulsive behaviors. Evaluation of the clinical features of 20 individuals with novel pathogenic NR2F1 variants demonstrated that, in addition to visual and cognitive deficits, individuals with BBSOAS manifested hypotonia (75%), seizures (40%), repetitive behavior (40%), autism spectrum disorder (35%), oromotor dysfunction (60%), thinning of the corpus callosum (53%), and hearing defects (20%) (Chen et al., 2016). De novo probably damaging missense variants in NR2F1 have also been observed in two ASD probands: one from the Simons Simplex Collection (Sanders et al., 2012), the other from the Autism Sequencing Consortium (De Rubeis et al., 2014).

Molecular Function

The protein encoded by this gene is a nuclear hormone receptor and transcriptional regulator that binds to 5'-AGGTCA-3' repeats. Heterozygous mutations in this gene are a cause of Bosch-Boonstra-Schaaf optic atrophy syndrome (BBSOAS; OMIM 615722), an autosomal dominant disorder characterized by delayed development, moderate intellectual disability, and optic atrophy (Bosch et al., 2014).

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
NR2F1 mutations cause optic atrophy with intellectual disability.
Bosch-Boonstra-Schaaf optic atrophy syndrome
ID, ASD
Positive Association
Tourette syndrome
Support
Rare genetic susceptibility variants assessment in autism spectrum disorder: detection rate and practical use.
ASD
Support
Lessons learned from additional research analyses of unsolved clinical exome cases.
ASD, DD, epilepsy/seizures
Support
Autism risk in offspring can be assessed through quantification of male sperm mosaicism.
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
The genomic landscape of balanced cytogenetic abnormalities associated with human congenital anomalies.
DD
Multiple congenital anomalies
Support
Increased diagnostic and new genes identification outcome using research reanalysis of singleton exome sequencing.
ID, epilepsy/seizures
Support
NR2F1 database: 112 variants and 84 patients support refining the clinical synopsis of Bosch-Boonstra-Schaaf optic atrophy syndrome
Bosch-Boonstra-Schaaf optic atrophy syndrome
Support
Meta-analysis of 2,104 trios provides support for 10 new genes for intellectual disability
ID
Support
The combination of whole-exome sequencing and copy number variation sequencing enables the diagnosis of rare neurological disorders.
Epilepsy/seizures
DD, ID
Support
Novel dominant-negative NR2F1 frameshift mutation and a phenotypic expansion of the Bosch-Boonstra-Schaaf optic atrophy syndrome
Bosch-Boonstra-Schaaf optic atrophy syndrome
ASD, DD, epilepsy/seizures
Support
Synaptic, transcriptional and chromatin genes disrupted in autism.
ASD
Support
Bosch-Boonstra-Schaaf optic atrophy syndrome
Support
Rates, distribution and implications of postzygotic mosaic mutations in autism spectrum disorder.
ASD
Support
NR2F1 regulates regional progenitor dynamics in the mouse neocortex and cortical gyrification in BBSOAS patients
Bosch-Boonstra-Schaaf optic atrophy syndrome
Support
De novo mutations revealed by whole-exome sequencing are strongly associated with autism.
ASD
Support
Bosch-Boonstra-Schaaf optic atrophy syndrome
Support
Leveraging blood serotonin as an endophenotype to identify de novo and rare variants involved in autism.
ASD
Support
Missense NR2F1 variant in monozygotic twins affected with the Bosch-Boonstra-Schaaf optic atrophy syndrome
Bosch-Boonstra-Schaaf optic atrophy syndrome
Support
DD, ID, epilepsy/seizures
Support
A clinical utility study of exome sequencing versus conventional genetic testing in pediatric neurology.
Psychomotor retardation
Recent Recommendation
Imbalance of Excitatory/Inhibitory Neuron Differentiation in Neurodevelopmental Disorders with an NR2F1 Point Mutation
ASD
Recent Recommendation
Phenotypic expansion of Bosch-Boonstra-Schaaf optic atrophy syndrome and further evidence for genotype-phenotype correlations
Bosch-Boonstra-Schaaf optic atrophy syndrome
ASD or autistic features, ADHD
Recent Recommendation
The expanding clinical phenotype of Bosch-Boonstra-Schaaf optic atrophy syndrome: 20 new cases and possible genotype-phenotype correlations.
Bosch-Boonstra-Schaaf optic atrophy syndrome
ID, ASD, epilepsy/seizures, ADHD
Recent Recommendation
Pathogenic NR2F1 variants cause a developmental ocular phenotype recapitulated in a mutant mouse model
Bosch-Boonstra-Schaaf optic atrophy syndrome, DD
ASD, ADHD, learning disability, epilepsy/seizures

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN817R001 
 missense_variant 
 c.344G>C 
 p.Arg115Pro 
 De novo 
  
  
 GEN817R002 
 missense_variant 
 c.339C>A 
 p.Ser113Arg 
 De novo 
  
  
 GEN817R003 
 missense_variant 
 c.755T>C 
 p.Leu252Pro 
 De novo 
  
  
 GEN817R004 
 copy_number_loss 
  
  
 Unknown 
  
  
 GEN817R005 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN817R006 
 missense_variant 
 c.335G>A 
 p.Arg112Lys 
 De novo 
  
 Simplex 
 GEN817R007 
 missense_variant 
 c.1211G>A 
 p.Arg404His 
 De novo 
  
 Simplex 
 GEN817R008 
 missense_variant 
 c.305C>T 
 p.Thr102Ile 
 De novo 
  
  
 GEN817R009 
 missense_variant 
 c.382T>C 
 p.Cys128Arg 
 De novo 
  
  
 GEN817R010 
 missense_variant 
 c.403C>A 
 p.Arg135Ser 
 De novo 
  
  
 GEN817R011 
 missense_variant 
 c.413G>A 
 p.Cys138Tyr 
 De novo 
  
  
 GEN817R012 
 missense_variant 
 c.425G>T 
 p.Arg142Leu 
 De novo 
  
  
 GEN817R013 
 missense_variant 
 c.436T>C 
 p.Cys146Arg 
 De novo 
  
  
 GEN817R014 
 missense_variant 
 c.463G>A 
 p.Ala155Thr 
 De novo 
  
  
 GEN817R015 
 missense_variant 
 c.1103G>A 
 p.Gly368Asp 
 De novo 
  
  
 GEN817R016 
 inframe_deletion 
 c.328_330del 
 p.Phe110del 
 De novo 
  
  
 GEN817R017 
 frameshift_variant 
 c.103_113delinsCGCCGCCGC 
 p.Gly35ArgfsTer361 
 De novo 
  
  
 GEN817R018 
 frameshift_variant 
 c.291del 
 p.Tyr98ThrfsTer21 
 De novo 
  
  
 GEN817R019 
 initiator_codon_variant 
 c.2T>G 
 p.Met1? 
 De novo 
  
  
 GEN817R020 
 initiator_codon_variant 
 c.2T>G 
 p.Met1? 
 De novo 
  
  
 GEN817R021 
 initiator_codon_variant 
 c.2T>G 
 p.Met1? 
 De novo 
  
  
 GEN817R022 
 initiator_codon_variant 
 c.2T>G 
 p.Met1? 
 De novo 
  
  
 GEN817R023 
 initiator_codon_variant 
 c.2_4delinsGGA 
 p.MetAla1_?2 
 De novo 
  
  
 GEN817R024 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN817R025 
 copy_number_loss 
  
  
 Familial 
 Paternal 
 Simplex 
 GEN817R026 
 copy_number_loss 
  
  
 Unknown 
  
  
 GEN817R027 
 copy_number_loss 
  
  
 Unknown 
  
  
 GEN817R028 
 missense_variant 
 c.314G>A 
 p.Gly105Asp 
 De novo 
  
  
 GEN817R029 
 complex_structural_alteration 
  
  
 De novo 
  
  
 GEN817R030 
 missense_variant 
 c.413G>A 
 p.Cys138Tyr 
 De novo 
  
 Simplex 
 GEN817R031 
 stop_gained 
 c.82C>T 
 p.Gln28Ter 
 De novo 
  
 Simplex 
 GEN817R032 
 missense_variant 
 c.314G>A 
 p.Gly105Asp 
 De novo 
  
  
 GEN817R033 
 missense_variant 
 c.531C>G 
 p.Asp177Glu 
 De novo 
  
 Simplex 
 GEN817R034 
 initiator_codon_variant 
 c.2T>C 
 p.Met1? 
 De novo 
  
  
 GEN817R035 
 missense_variant 
 c.289C>T 
 p.His97Tyr 
 De novo 
  
  
 GEN817R036 
 missense_variant 
 c.403C>T 
 p.Arg135Cys 
 De novo 
  
  
 GEN817R037 
 missense_variant 
 c.1184G>C 
 p.Gly395Ala 
 De novo 
  
 Simplex 
 GEN817R038 
 missense_variant 
 c.256T>C 
 p.Cys86Arg 
 De novo 
  
  
 GEN817R039 
 missense_variant 
 c.262G>A 
 p.Val88Met 
 De novo 
  
  
 GEN817R040 
 missense_variant 
 c.284G>T 
 p.Gly95Val 
 Unknown 
  
  
 GEN817R041 
 missense_variant 
 c.290A>C 
 p.His97Pro 
 Unknown 
  
  
 GEN817R042 
 missense_variant 
 c.293A>G 
 p.Tyr98Cys 
 De novo 
  
  
 GEN817R043 
 missense_variant 
 c.311A>G 
 p.Glu104Gly 
 De novo 
  
  
 GEN817R044 
 missense_variant 
 c.323G>T 
 p.Ser108Ile 
 Unknown 
  
  
 GEN817R045 
 missense_variant 
 c.365G>C 
 p.Cys122Ser 
 Unknown 
  
  
 GEN817R046 
 missense_variant 
 c.417A>T 
 p.Gln139His 
 De novo 
  
  
 GEN817R047 
 copy_number_loss 
  
  
 Familial 
 Maternal 
  
 GEN817R048 
 copy_number_loss 
  
  
 Unknown 
  
  
 GEN817R049 
 initiator_codon_variant 
 c.1A>G 
 p.Met1? 
 De novo 
  
  
 GEN817R050 
 initiator_codon_variant 
 c.2T>C 
 p.Met1? 
 De novo 
  
  
 GEN817R051 
 frameshift_variant 
 c.380dup 
 p.Asn127LysfsTer270 
 Unknown 
  
  
 GEN817R052 
 stop_gained 
 c.1117C>T 
 p.Arg373Ter 
 De novo 
  
  
 GEN817R053 
 missense_variant 
 c.931G>C 
 p.Ala311Pro 
 Unknown 
  
  
 GEN817R054 
 missense_variant 
 c.954G>C 
 p.Glu318Asp 
 De novo 
  
  
 GEN817R055 
 missense_variant 
 c.1217T>C 
 p.Met406Thr 
 De novo 
  
  
 GEN817R056 
 missense_variant 
 c.313G>A 
 p.Gly105Ser 
 De novo 
  
 Multiplex (monozygotic twins) 
 GEN817R057 
 frameshift_variant 
 c.1083del 
 p.Asn362ThrfsTer33 
 De novo 
  
 Simplex 
 GEN817R058 
 frameshift_variant 
 c.4del 
 p.Ala2GlnfsTer3 
 De novo 
  
  
 GEN817R059 
 frameshift_variant 
 c.51_69dup 
 p.Asn24GlyfsTer379 
 Unknown 
  
  
 GEN817R060 
 inframe_insertion 
 c.91_93dup 
 p.Arg31dup 
 Unknown 
  
  
 GEN817R061 
 stop_gained 
 c.115G>T 
 p.Glu39Ter 
 De novo 
  
  
 GEN817R062 
 missense_variant 
 c.290A>C 
 p.His97Pro 
 De novo 
  
  
 GEN817R063 
 stop_gained 
 c.353T>G 
 p.Leu118Ter 
 De novo 
  
  
 GEN817R064 
 frameshift_variant 
 c.359dup 
 p.Tyr120Ter 
 Unknown 
  
  
 GEN817R065 
 missense_variant 
 c.366C>G 
 p.Cys122Trp 
 De novo 
  
  
 GEN817R066 
 missense_variant 
 c.463G>A 
 p.Ala155Thr 
 De novo 
  
  
 GEN817R067 
 stop_gained 
 c.513G>C 
 p.Tyr171Ter 
 Unknown 
  
  
 GEN817R068 
 missense_variant 
 c.599C>G 
 p.Thr200Arg 
 De novo 
  
  
 GEN817R069 
 stop_gained 
 c.698G>A 
 p.Trp233Ter 
 De novo 
  
  
 GEN817R070 
 missense_variant 
 c.1024G>A 
 p.Glu342Lys 
 De novo 
  
  
 GEN817R071 
 inframe_deletion 
 c.1036_1047del 
 p.Glu346_Gln349del 
 Unknown 
  
  
 GEN817R072 
 missense_variant 
 c.1115T>C 
 p.Leu372Pro 
 Familial 
 Maternal 
 Multiplex 
 GEN817R073 
 inframe_deletion 
 c.1118_1123del 
 p.Arg373_Leu374del 
 Familial 
 Maternal 
 Simplex 
 GEN817R074 
 missense_variant 
 c.1183G>A 
 p.Gly395Ser 
 De novo 
  
  
 GEN817R075 
 stop_gained 
 c.1198G>T 
 p.Glu400Ter 
 De novo 
  
  
 GEN817R076 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN817R077 
 stop_gained 
 c.124C>T 
 p.Gln42Ter 
 De novo 
  
 Simplex 
 GEN817R078 
 missense_variant 
 c.766T>G 
 p.Trp256Gly 
 De novo 
  
  
 GEN817R079 
 synonymous_variant 
 c.993C>T 
 p.Asp331%3D 
 De novo 
  
  
 GEN817R080 
 inframe_deletion 
 c.1036_1038del 
 p.Glu346del 
 De novo 
  
  
 GEN817R081 
 missense_variant 
 c.320A>G 
 p.Lys107Arg 
 De novo 
  
  
 GEN817R082 
 frameshift_variant 
 c.21_43del 
 p.Trp8GlyfsTer381 
 De novo 
  
  

Common

Variant ID
Polymorphism
SNP ID
Allele Change
Residue Change
Population Origin
Population Stage
Author, Year
 GEN817C001 
 intergenic_variant 
 rs2453763 
 T>A 
  
 GWAS meta-analysis cohort consisting of 6,133 individuals with Tourette syndrome and 13,565 ancestry-matched controls. 
 Discovery 
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
5
Duplication
 1
 
5
Duplication
 1
 
5
Deletion-Duplication
 2
 
5
Deletion
 1
 
5
Deletion
 1
 
5
Deletion
 2
 
5
Deletion-Duplication
 19
 

Model Summary

Mouse Nr2f1 gene is involved in both dorsal and ventral telencephalic development. Nr2f1 heterozygous mice show E/I imbalance of neurons in the primary somatosensory cortex, impaired social interaction, impaired social memory, repetitive self-grooming, anxiety, decreaded spatial memory, no change in motor coordination. Treatment with GinkgolideA in adult mice, restored sociability, social memory, ameliorated self-grooming, improved spatial memory, decreased anxiety, in the short but not long term.

References

Type
Title
Author, Year
Primary
Imbalance of Excitatory/Inhibitory Neuron Differentiation in Neurodevelopmental Disorders with an NR2F1 Point Mutation

M_NR2F1_1_KI_HT_R112K

Model Type: Genetic
Model Genotype: Heterozygous
Mutation: Nr2f1 point mutant mice with the humanized R112K substitution ( Nr2f1^+/m) were generated by injecting female C57BL/6 mice with Cas9 mRNAs, sgRNA, and donor oligo. The R112K point mutation (GRCh38.p12;chr5:93585358G>A; c.335G>A; p.R112K) locates in the DNA-binding domain of Nr2f1. Nr2f1^+/m;Gad1-GFP reporter mutant mice were generated for histological analyses. Nr2f1 point mutant mice were generated through in vitro fertilization (IVF) by injecting the CRISPR components in superovulated mice, as well as through natural mating.
Allele Type: Humanized LOF mutation
Strain of Origin: NA
Genetic Background: C57BL/6
ES Cell Line: NA
Mutant ES Cell Line: NA
Model Source: NA

M_NR2F1_1_KI_HT_R112K

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Neuronal number: excitatory neurons1
Decreased
Description: Decreased numbers of cux1+ and ctip2+ excitatory projection neurons
Exp Paradigm: NA
 Immunofluorescence staining
 2 months
Neuronal differentiation1
Abnormal
Description: Altered neuron differentiation in the primary somatosensory cortex
Exp Paradigm: NA
 Immunofluorescence staining
 E12.5
Neuronal specification1
Abnormal
Description: Abnormal dorsal-ventral telencephalic specification assessed by reduced expression of dorsal npc markers (pax6, ngn1, and emx1) and increased expression of ventral npc markers (nkx2-1 and gsx1)
Exp Paradigm: NA
 Immunofluorescence staining
 E12.5
Neuronal number: inhibitory neurons1
Increased
Description: Increased numbers of gad1+, pv+, and sst+ inhibitory interneurons; increased gad1-gfp positive neurons in the primary somatosensory cortex; increased numbers of gad1 positive interneurons in the pfc
Exp Paradigm: NA
 Immunofluorescence staining
 2 months
Miniature post synaptic current amplitude: excitatory1
Decreased
Description: Decreased amplitudes of mepscs
Exp Paradigm: NA
 Whole-cell patch clamp
 2 months
Miniature post synaptic current frequency: inhibitory1
Increased
Description: Increased amplitudes of mipscs
Exp Paradigm: NA
 Whole-cell patch clamp
 2 months
Miniature post synaptic current frequency: excitatory1
Decreased
Description: Decreased frequencies of mepscs
Exp Paradigm: NA
 Whole-cell patch clamp
 2 months
Miniature post synaptic current amplitude: inhibitory1
Increased
Description: Increased frequencies of mipscs
Exp Paradigm: NA
 Whole-cell patch clamp
 2 months
Perseveration1
Increased
Description: Decrease in spontaneous alternations of arms
Exp Paradigm: NA
 Y-maze test
 2 months
Self grooming: perseveration1
Increased
Description: Increase in time spent self-grooming
Exp Paradigm: NA
 Grooming behavior assessments
 2 months
Social memory1
Decreased
Description: Decreased preference for a novel mouse over a familiar mouse
Exp Paradigm: NA
 Three-chamber social approach test
 2 months
Social approach1
Decreased
Description: Decreased preference for a novel mouse over an inanimate object
Exp Paradigm: NA
 Three-chamber social approach test
 2 months
Anxiety1
Increased
Description: Decreased time spent in the center
Exp Paradigm: NA
 Open field test
 2 months
Anxiety1
Increased
Description: Increased time spent in the dark arm
Exp Paradigm: NA
 Light-dark exploration test
 2 months
Anxiety1
Increased
Description: Increased time spent in the closed arm
Exp Paradigm: NA
 Elevated plus maze test
 2 months
Object recognition memory1
Decreased
Description: Decreased time spent exploring novel object
Exp Paradigm: NA
 Novel object recognition test
 2 months
Spatial working memory1
Decreased
Description: Decreased spontaneous alternations of arms
Exp Paradigm: NA
 Y-maze test
 2 months
Signaling: hedgehog pathway1
Increased
Description: Increased hedgehog pathway activity assessed by upregulation of shh and gli1 and downregulation of gli3 in the whole brain
Exp Paradigm: NA
 Immunofluorescence staining
 E12.5
Motor coordination and balance1
 No change
 Accelerating rotarod test
 2 months
Neuronal number: excitatory neurons1
 No change
 Immunofluorescence staining
 2 months
Action potential property: firing rate1
 No change
 Whole-cell patch clamp
 2 months
 Not Reported:

 

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