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Xq21.33CNV Type: Deletion-Duplication


Largest CNV size: 201249 bp

Statistics Box:
Number of Reports: 9



Summary Information

Summary statement in development

Additional Locus Information

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References

Major Reports

Title
Author, Year
Report Class
CNV Type
Functional impact of global rare copy number variation in autism spectrum disorders.
Deletion-Duplication
An evidence-based approach to establish the functional and clinical significance of copy number variants in intellectual and developmental disabili...
Deletion-Duplication
Excess of rare, inherited truncating mutations in autism.
Duplication
High resolution analysis of rare copy number variants in patients with autism spectrum disorder from Taiwan.
Duplication

Minor Reports

Title
Author, Year
Report Class
CNV Type
Multiple recurrent de novo CNVs, including duplications of the 7q11.23 Williams syndrome region, are strongly associated with autism.
Deletion-Duplication
Epileptic encephalopathies of the Landau-Kleffner and continuous spike and waves during slow-wave sleep types: genomic dissection makes the link wi...
Duplication
A discovery resource of rare copy number variations in individuals with autism spectrum disorder.
Deletion-Duplication
Performance of case-control rare copy number variation annotation in classification of autism.
Deletion-Duplication
Copy-number variations are enriched for neurodevelopmental genes in children with developmental coordination disorder.
Duplication

Cases

Cohort ID
Author, Year
Descripton
Cohort Size
Diagnosis
Age
Gender
CNV Size
Deletion
Duplication
Total CNV's
 chen_17_ASD_discovery_cases
 Patients recruited from the Children's Mental Health Center, National Taiwan University Hospital, Taipei, Taiwan and Department of Psychiatry, Chang-Gung Memorial Hospital, Kuei-Shan, Taiwan.
 335
 All cases met the clinical diagnosis of autistic disorder as defined by DSM-IV; diagnosis was confirmed by interviewing parents using the Chinese version of ADI-R, and all cases received further clincial evaluation according to DSM-5 diagnostic criteria for ASD. Intelligence was measured using the Wechsler Primary and Preschool Scale of Intelligence-Revised (WPPSI-R), the Wechsler Intelligence Scale for Children-3rd Edition (WISC-III), or the Wechsler Adult Intelligence Scale (WAIS). Autistic-like social deficits were assessed using the Social Responsiveness Scale (SRS); symptoms of inattention, hyperactivity, and oppositional behavior were assessed using the Swanson, Nolan and Pelham Quest
 Mean age, 9.4 4.0 years
 89.25% Male
 1299000
 0
 1
 1
 engchuan_15_ASD_discovery_cases
 Samples from the Autism Genome Project (AGP)
 1892
 Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
 N/A
 85.78% Male
 70352
 2
 1
 3
 kaminsky_11_DD/ID/ASD_discovery_cases
 Cases from the International Standards for Cytogenomic Arrays (ISCA) consortium
 15749
 Unexplained developmental delay, intellectual disability, dysmorphic features, multiple congenital anomalies, autism spectrum disorders, or clinical features suggestive of a chromosomal syndrome
 NA
 NA
 738273
 2
 2
 4
 krumm_15_ASD_discovery_cases
 Probands from the Simons Simplex Collection
 2377
 Diagnosis of ASD
 N/A
 N/A
 273090
 0
 2
 2
 lesca_12_EP_discovery_cases
 Epilepsy patients collected at four French hospitals from 2009: Strasbourg Univ. Hospital (n=40), Lyons Univ. Hospital (n=18), Henri Gastaut Hospital (St. Paul Centre) in Marseille (n=2), and Reims American Memorial Hospital (n=1).
 61
 Epilepsy/epileptic encephalopathy. 41 patients with continuous spike and wave during slow-wave sleep syndrome (CSWSS), 20 patients with Landau-Kleffner syndrome (LKS). 12 (out of 57) patients displayed autistic features; ADHD features (hyperactivity, attention deficit and/or aggressiveness) reported in 41/58 patients,
 Mean age of diagnosis: 5.6 yrs. (range, 1-14 yrs.)
 61% Male
 997000
 0
 1
 1
 mosca_16_DCD_discovery_cases
 Participants recruited as part of a multidisciplinary study at the Alberta Children's Hospital (Calgary, Alberta, Canada)
 82
 All cases met diagnostic criteria for developmental coordination disorder (DCD) with or without co-occurring ADHD and/or reading disorder.
 Range, 8-17 years (Mean, 10.06 2.92 yrs.)
 N/A
 89046
 0
 1
 1
 pinto_10_ASD_discovery_cases
 Autism Genome Project (AGP) consortium patient cohort from families with at least two ASD individuals
 996
 ASD (ADI-R and ADOS): strict, broad, or spectrum ASD
 
 
 39580
 1
 1
 2
 prasad_12_ASD_discovery_cases
 Unrelated ASD cases recruited from three Canadian sites (Hospital for Sick Children, McMaster University, and Memorial University of Newfoundland); the majority of cases had been previously genotyped with results published in Marshall et al., 2008 and Pinto et al., 2010. 20 cases from initial cohort of 696 were excluded from further analysis (due to CNVs > 5 Mb).
 676
 Diagnosis of ASD based on meeting criteria on ADI-R and/or ADOS
 NA
 82.84% Male
 912816
 3
 2
 5
 sanders_11_ASD_discovery_cases
 Autistic probands from the Simons Simplex Collection (SSC). 872 probands in quartet families, 272 probands in trios.
 1124
 ASD diagnosis: 89.5% autism; 8.5% PDD-NOS, 2% Asperger syndrome. Mean full-scale IQ 85.1 1.5 (mean verbal IQ, 81.9 1.7; mean non-verbal IQ, 88.4 1.4)
 Mean, 9.1 yrs.
 86.1% Male
 201249
 4
 2
 6

Controls

Cohort ID
Author, Year
Descripton
Cohort Size
Diagnosis
Age
Gender
CNV Size
Deletion
Duplication
Total CNV's
 chen_17_ASD_discovery_controls2
 Male control subjects chosen from the Han Chinese Cell and Genome Bank (HCCGB) in Taiwan screened for CNVs at the X chromosome
 525
 Subjects received physical check-up and questionnaire screening to ensure that they did not have any abnormal physical condition and mental illness
 
 100% Male
 0
 0
 0
 0
 engchuan_15_ASD_discovery_controls
 Platform-matched controls from three large studies: SAGE (Study of Addiction Genetics and Environment), Ontario Colorectal Cancer study, and HABC (Health Aging and Body Composition)
 2342
 Controls; subjects had no previous psychiatric history
 N/A
 46.67% Male
 105642
 1
 6
 7
 kaminsky_11_DD/ID/ASD_discovery_controls
 Controls from the International Standards for Cytogenomic Arrays (ISCA) consortium
 10118
 Controls
 NA
 NA
 NA
 NA
 NA
 NA
 krumm_15_ASD_discovery_controls
 Unaffected siblings from quad families from the Simons Simplex Collection
 1786
 Control
 N/A
 N/A
 0
 0
 0
 0
 nord_11_ASD_discovery_controls
 Samples from 367 total control individuals (319 European American, 48 African American) used to test for differences in rare CNV prevalence compared with autism cases
 123
 Controls (no history of psychiatric symptoms by self-report)
 30 yrs.
 
 122842
 1
 1
 2
 prasad_12_ASD_discovery_controls
 PDx controls [1000 DNA samples from reportedly healthy donors (50.2% male) from BioServe (Beltsville, MD)] and 4139 in-house controls previously reported in Krawcak et al. 2006, Stewart et al. 2009, and Bierut et al. 2010. CNVs identified in controls were used to define rare ASD-specific CNVs.
 5139
 Control
 NA
 NA (PDx controls 50.2% male)
 912816
 0
 0
 0
 sanders_11_ASD_discovery_controls
 Matched siblings of autistic probands from the Simons Simplex Collection (SSC).
 872
 Controls
 Mean, 10.0 yrs.
 
 198854
 12
 10
 22

Cases

Cohort ID
Geographical Ancestry
Discovery Method
Platform
Algorithm
Software
Validation Method
 chen_17_ASD_discovery_cases
  Han Chinese
 Array SNP
  Affymetrix 6.0
 
 Affymetrix Genotyping Console v.4.1
 RT-qPCR
 engchuan_15_ASD_discovery_cases
  Caucasian
 Solid phase hybridization
  Illumina 1M
 
 
 None
 kaminsky_11_DD/ID/ASD_discovery_cases
  NA
 aCGH
  Agilent 44K, Agilent 105K
 
 Feature Extraction, DNA Analytics
 FISH, qPCR, MLPA, aCGH, standard G-banded chromosome analysis
 krumm_15_ASD_discovery_cases
  N/A
 WES
 
 CoNIFER, XHMM
 
 Solid phase hybridization (Illumina 1M, 1 M Duo, or Omni 2.5)
 lesca_12_EP_discovery_cases
  France
 aCGH
  Agilent SurePrint G3 Human CGH Microarray 4x180K
 ADM-2
 Agilent Feature Extraction v10.7.3.1, Agilent Genomic WORKBENCH v5.0.14
 None
 mosca_16_DCD_discovery_cases
  Canada
 Solid phase hybridization
  Illumina HumanOmni2.5-Quad BeadChip
 iPattern, PennCNV, QuantiSNP, CNVPartition
 
 None
 pinto_10_ASD_discovery_cases
  European
 Solid phase hybridization
  Illumina Infinium 1M SNP microarray
 QuantiSNP, iPattern
 
 qPCR, long-range PCR (LR-PCR), MLPA, FISH, aCGH (Agilent 1M), array SNP (Affymetrix 500K)
 prasad_12_ASD_discovery_cases
  Canada
 aCGH
  Agilent 1M
 ADM-2, DNAcopy (R Bioconductor)
 DNA Analytics v4.0.85 (Agilent), DNAcopy
 None
 sanders_11_ASD_discovery_cases
  White non-Hispanic, 74.5%; mixed, 9.3%, Asian, 4.3%, White Hispanic, 4.0%, African-American, 3.8%; other, 4.2&
 Solid phase hybridization
  Illumina 1M v1, Illumina 1M v3
 PennCNV, QuantiSNP, GNOSIS
 
 

Controls

Cohort ID
Geographical Ancestry
Discovery Method
Platform
Algorithm
Software
Validation Method
  chen_17_ASD_discovery_controls2
  Han Chinese
  Array SNP
  Affymetrix 6.0
 
  Affymetrix Genotyping Console v.4.1
 
  engchuan_15_ASD_discovery_controls
  Caucasian
  Solid phase hybridization
  Illumina 1M
 
 
  None
  kaminsky_11_DD/ID/ASD_discovery_controls
  NA
  aCGH
  Agilent 44K, Agilent 105K
 
  Feature Extraction, DNA Analytics
 
  krumm_15_ASD_discovery_controls
  N/A
  WES
 
  CoNIFER, XHMM
 
  None
  nord_11_ASD_discovery_controls
 
  aCGH
  NimbleGen HD2
  Sliding-window algorithm, ~10 kb minumum size threshold
 
  None
  prasad_12_ASD_discovery_controls
  NA
  aCGH
  Agilent 1M
  ADM-2, DNAcopy (R Bioconductor)
  DNA Analytics v4.0.85 (Agilent), DNAcopy
 
  sanders_11_ASD_discovery_controls
 
  Solid phase hybridization
  Illumina 1M v1 or Illumina 1M v3
  PennCNV, QuantiSNP, GNOSIS
 
 

Cases

Patient ID
Author, Year
Age
Gender
Primary Diagnosis
Clinical Profile
Cognitive Profile
CNV Start
CNV End
CNV Size
Genome Build
Type Method
Validation
  chen_17_ASD_discovery_cases-caseU-728
 N/A
 M
 ASD
 Case met the clinical diagnosis of autistic disorder as defined by DSM-IV, which was confirmed by interviewing parents using the Chinese version of ADI-R; case also received further clincial evaluation according to DSM-5 diagnostic criteria for ASD. ADI-R evaluation results: Qualitative abnormalities in reciprocal social interaction, current score 13 (past score 23); Qualitative abnormalities in verbal and nonverbal communication, current score 8 (past score 13); Qualitative abnormalities in nonverbal communication, current score 2 (past score 6); Restricted, repetitive, and stereotyped patterns of behaviour, current score 1 (past score 1); Abnormality of development evident at or before 36 months, past score 1. Behavioral/psychiatric evaluation: Social Responsiveness Scale (SRS) score 107; Swanson, Nolan and Pelham Questionnaire (SNAP-IV) score 33. Epilepsy: no history of epilepsy.
 Performance IQ 107, Verbal IQ 109, Full-scale IQ 108
 97450630
 98749849
  1299220
 GRCh38
 Duplication
 Yes
  engchuan_15_ASD_discovery_cases-case14047_820
 N/A
 N/A
 ASD
 Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
 
 95140229
 95210581
  70353
 GRCh38
 Deletion
 No
  engchuan_15_ASD_discovery_cases-case21003_1
 N/A
 N/A
 ASD
 Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
 
 95089758
 95136827
  47070
 GRCh38
 Duplication
 No
  engchuan_15_ASD_discovery_cases-case5440_3
 N/A
 N/A
 ASD
 Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
 
 95132630
 95172209
  39580
 GRCh38
 Deletion
 No
  kaminsky_11_DD/ID/ASD_discovery_cases-ISCA00000894
 NA
 NA
 Developmental delay/intellectual disability/ASD
 Clinical profile NA
 Cognitive profile NA
 97669841
 98038562
  368722
 GRCh38
 Deletion
 Yes
  kaminsky_11_DD/ID/ASD_discovery_cases-ISCA00001129
 NA
 NA
 Developmental delay/intellectual disability/ASD
 Clinical profile NA
 Cognitive profile NA
 97300288
 98038562
  738275
 GRCh38
 Deletion
 Yes
  kaminsky_11_DD/ID/ASD_discovery_cases-ISCA00004344
 NA
 NA
 Developmental delay/intellectual disability/ASD
 Clinical profile NA
 Cognitive profile NA
 95170882
 95822404
  651523
 GRCh38
 Duplication
 Yes
  kaminsky_11_DD/ID/ASD_discovery_cases-ISCA00005046
 NA
 NA
 Developmental delay/intellectual disability/ASD
 Clinical profile NA
 Cognitive profile NA
 96635070
 96965204
  330135
 GRCh38
 Duplication
 Yes
  krumm_15_ASD_discovery_cases-case12834.p1
 N/A
 Male
 ASD
 Proband from the Simons Simplex Collection (SSC). Family type: Quad
 
 97429649
 97599317
  169669
 GRCh38
 Duplication
 Yes
  krumm_15_ASD_discovery_cases-case12834.p1
 N/A
 Male
 ASD
 Proband from the Simons Simplex Collection (SSC). Family type: Quad
 
 96685058
 96958148
  273091
 GRCh38
 Duplication
 Yes
  lesca_12_EP_discovery_cases-case1-1813
 NA
 M
 Epilepsy + autistic features
 Phenotype: i-CSWSS. Seizure Characteristics: Nocturnal. Autistic features: Yes. ADHD features: Yes. Other features: Temporo-sylvian arachnoidal cyst.
 Initial cognitive development: Delayed. Cognitive regression: No.
 94881521
 95878675
  997155
 GRCh38
 Duplication
 No
  mosca_16_DCD_discovery_cases-case128203
 N/A
 M
 DCD
 Ancestry: European. Family history: maternal diagnosis DCD, ADHD and reading disorder; paternal diagnosis reading disorder.
 
 96383286
 96472331
  89046
 GRCh38
 Duplication
 No
  pinto_10_ASD_discovery_cases-case5209_3
 NA
 M
 Autism
 Below average language (<1%ile), no epilepsy, no dysmorphic features
 Average nonverbal IQ (50%ile)
 95936387
 95949943
  13557
 Unknown
 Duplication
 Yes
  pinto_10_ASD_discovery_cases-case5440_3
 NA
 M
 ASD
 NA
 NA
 95132630
 95172209
  39580
 GRCh38
 Deletion
 Yes
  prasad_12_ASD_discovery_cases-case117482L
 NA
 M
 ASD
 Diagnosis of ASD based on meeting criteria on ADI-R and/or ADOS. Novel CNV
 
 95853392
 95864822
  11431
 Unknown
 Deletion
 No
  prasad_12_ASD_discovery_cases-case120617
 NA
 M
 ASD
 Diagnosis of ASD based on meeting criteria on ADI-R and/or ADOS. Novel CNV
 
 95110250
 95143961
  33712
 Unknown
 Deletion
 No
  prasad_12_ASD_discovery_cases-case161584L
 NA
 M
 ASD
 Diagnosis of ASD based on meeting criteria on ADI-R and/or ADOS. CNV identified by previous SNP microarray study
 
 96492741
 97405556
  912816
 Unknown
 Duplication
 No
  prasad_12_ASD_discovery_cases-case47556
 NA
 F
 ASD
 Diagnosis of ASD based on meeting criteria on ADI-R and/or ADOS. Novel CNV
 
 96415067
 96426115
  11049
 Unknown
 Deletion
 No
  prasad_12_ASD_discovery_cases-case89851L
 NA
 M
 ASD
 Diagnosis of ASD based on meeting criteria on ADI-R and/or ADOS. CNV identified by previous SNP microarray study
 
 95931964
 95950952
  18989
 Unknown
 Duplication
 No
  sanders_11_ASD_discovery_cases-11025.p1
 4.6
 F
 ASD
 NA
 Full-scale IQ, 98; non-verbal IQ, 102; verbal IQ, 92
 95987662
 95996374
  8713
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-11794.p1
 8.3
 M
 Autism
 NA
 Full-scale IQ, 36; non-verbal IQ, 40; verbal IQ, 33
 97843842
 97847967
  4126
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-12275.p1
 4.4
 M
 Autism
 NA
 Full-scale IQ, 111; non-verbal IQ, 111; verbal IQ, 107
 98543261
 98744510
  201250
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-12572.p1
 14.9
 M
 Autism
 NA
 Full-scale IQ, 38; non-verbal IQ, 49; verbal IQ, 31
 98978239
 98982029
  3791
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-12828.p1
 9.3
 F
 Autism
 NA
 Full-scale IQ, 59; non-verbal IQ, 57; verbal IQ, 66
 95070123
 95120990
  50868
 GRCh38
 Duplication
 No
  sanders_11_ASD_discovery_cases-12924.p1
 5.5
 F
 Autism
 NA
 Full-scale IQ, 104; non-verbal IQ, 117; verbal IQ, 81
 97516341
 97584658
  68318
 GRCh38
 Duplication
 No

Controls

Patient ID
Author, Year
Age
Gender
Primary Diagnosis
Clinical Profile
Cognitive Profile
CNV Start
CNV End
CNV Size
Genome Build
Type Method
Validation
  engchuan_15_ASD_discovery_controls-controlB178717_1007875826
  N/A
  N/A
  Control
  No previous psychiatric history
 
  95094242
  95140404
  46163
  GRCh38
  Duplication
  No
  engchuan_15_ASD_discovery_controls-controlB883531_1007844959
  N/A
  N/A
  Control
  No previous psychiatric history
 
  95146999
  95209138
  62140
  GRCh38
  Deletion
  No
  engchuan_15_ASD_discovery_controls-controlB954474_1007874921
  N/A
  N/A
  Control
  No previous psychiatric history
 
  97738230
  97843873
  105644
  GRCh38
  Duplication
  No
  engchuan_15_ASD_discovery_controls-controlB963921_1007872666
  N/A
  N/A
  Control
  No previous psychiatric history
 
  95094242
  95132630
  38389
  GRCh38
  Duplication
  No
  engchuan_15_ASD_discovery_controls-controlB995629_1007855005
  N/A
  N/A
  Control
  No previous psychiatric history
 
  95723602
  95824871
  101270
  GRCh38
  Duplication
  No
  engchuan_15_ASD_discovery_controls-controlHABC_902798_902798
  N/A
  N/A
  Control
  No previous psychiatric history
 
  95093662
  95136827
  43166
  GRCh38
  Duplication
  No
  engchuan_15_ASD_discovery_controls-controlHABC_902835_902835
  N/A
  N/A
  Control
  No previous psychiatric history
 
  95083740
  95136827
  53088
  GRCh38
  Duplication
  No
  nord_11_ASD_discovery_controls-04C27275
 
 
  Control
 
 
  96871739
  96994580
  122842
  Unknown
  Duplication
 
  nord_11_ASD_discovery_controls-04C27520
 
 
  Control
 
 
  94767941
  94787546
  19606
  Unknown
  Deletion
 
  sanders_11_ASD_discovery_controls-11277.s1
  7.2
  F
  Control (matched sibling)
  NA
  NA
  95070123
  95120990
  50868
  GRCh38
  Duplication
  No
  sanders_11_ASD_discovery_controls-11330.s1
  11.8
  F
  Control (matched sibling)
  NA
  NA
  96264021
  96268959
  4939
  GRCh38
  Deletion
  No
  sanders_11_ASD_discovery_controls-11530.s1
  9.4
  F
  Control (matched sibling)
  NA
  NA
  95099206
  95140404
  41199
  GRCh38
  Duplication
  No
  sanders_11_ASD_discovery_controls-11715.s1
  6.6
  F
  Control (matched sibling)
  NA
  NA
  96676374
  96697327
  20954
  GRCh38
  Deletion
  No
  sanders_11_ASD_discovery_controls-11766.s1
  4.3
  F
  Control (matched sibling)
  NA
  NA
  95140229
  95140404
  176
  GRCh38
  Deletion
  No
  sanders_11_ASD_discovery_controls-11982.s1
  5.1
  F
  Control (matched sibling)
  NA
  NA
  95093662
  95140404
  46743
  GRCh38
  Duplication
  No
  sanders_11_ASD_discovery_controls-12006.s1
  16.9
  F
  Control (matched sibling)
  NA
  NA
  95140229
  95140404
  176
  GRCh38
  Deletion
  No
  sanders_11_ASD_discovery_controls-12060.s1
  10.6
  F
  Control (matched sibling)
  NA
  NA
  96804033
  96823538
  19506
  GRCh38
  Deletion
  No
  sanders_11_ASD_discovery_controls-12231.s1
  12.3
  F
  Control (matched sibling)
  NA
  NA
  95084172
  95126451
  42280
  GRCh38
  Duplication
  No
  sanders_11_ASD_discovery_controls-12250.s1
  6
  F
  Control (matched sibling)
  NA
  NA
  96676374
  96694318
  17945
  GRCh38
  Deletion
  No
  sanders_11_ASD_discovery_controls-12275.s1
  8.4
  M
  Control (matched sibling)
  NA
  NA
  98543261
  98742115
  198855
  GRCh38
  Deletion
  No
  sanders_11_ASD_discovery_controls-12281.s1
  18.1
  F
  Control (matched sibling)
  NA
  NA
  95078215
  95140404
  62190
  GRCh38
  Duplication
  No
  sanders_11_ASD_discovery_controls-12323.s1
  4
  F
  Control (matched sibling)
  NA
  NA
  98587440
  98649773
  62334
  GRCh38
  Deletion
  No
  sanders_11_ASD_discovery_controls-12435.s1
  9
  F
  Control (matched sibling)
  NA
  NA
  96676374
  96697327
  20954
  GRCh38
  Deletion
  No
  sanders_11_ASD_discovery_controls-12494.s1
  11
  F
  Control (matched sibling)
  NA
  NA
  95093662
  95126451
  32790
  GRCh38
  Duplication
  No
  sanders_11_ASD_discovery_controls-12507.s1
  26.1
  F
  Control (matched sibling)
  NA
  NA
  95140229
  95140404
  176
  GRCh38
  Deletion
  No
  sanders_11_ASD_discovery_controls-12653.s1
  8.5
  F
  Control (matched sibling)
  NA
  NA
  95132630
  95176205
  43576
  GRCh38
  Deletion
  No
  sanders_11_ASD_discovery_controls-12736.s1
  7.1
  F
  Control (matched sibling)
  NA
  NA
  95093662
  95140404
  46743
  GRCh38
  Duplication
  No
  sanders_11_ASD_discovery_controls-12790.s1
  8.9
  F
  Control (matched sibling)
  NA
  NA
  96683583
  96694318
  10736
  GRCh38
  Deletion
  No
  sanders_11_ASD_discovery_controls-12888.s1
  10.5
  F
  Control (matched sibling)
  NA
  NA
  95078215
  95126451
  48237
  GRCh38
  Duplication
  No
  sanders_11_ASD_discovery_controls-12956.s1
  7.4
  F
  Control (matched sibling)
  NA
  NA
  95093662
  95113037
  19376
  GRCh38
  Duplication
  No
  sanders_11_ASD_discovery_controls-13226.s1
  10.3
  F
  Control (matched sibling)
  NA
  NA
  95078215
  95113037
  34823
  GRCh38
  Duplication
  No

Cases

Patient ID
Validation Description
Primary Disorder Inheritence
Inheritence
Family Profile
Disease Segregation
Gene Content
Altered Gene Expression
 chen_17_ASD_discovery_cases-caseU-728
 RT-qPCR
 
 Unknown
 
 
 RPL6P29,EEF1A1P15,HMGB1P32,DIAPH2,DIAPH2-AS1
 
 engchuan_15_ASD_discovery_cases-case14047_820
 
 
 Unknown
 
 
 
 
 engchuan_15_ASD_discovery_cases-case21003_1
 
 
 Unknown
 
 
 
 
 engchuan_15_ASD_discovery_cases-case5440_3
 
 
 Unknown
 
 
 
 
 kaminsky_11_DD/ID/ASD_discovery_cases-ISCA00000894
 FISH, qPCR, MLPA, aCGH, or standard G-banded chromosome analysis
 
 Unknown
 Unknown
 Unknown
 
 
 kaminsky_11_DD/ID/ASD_discovery_cases-ISCA00001129
 FISH, qPCR, MLPA, aCGH, or standard G-banded chromosome analysis
 
 Unknown
 Unknown
 Unknown
 RN7SL74P,DIAPH2,DIAPH2-AS1
 
 kaminsky_11_DD/ID/ASD_discovery_cases-ISCA00004344
 FISH, qPCR, MLPA, aCGH, or standard G-banded chromosome analysis
 
 Paternal
 Unknown
 Unknown
 CALM1P1,RNA5SP510,HNRNPDLP3,HNRNPDLP1,RPS7P13
 
 kaminsky_11_DD/ID/ASD_discovery_cases-ISCA00005046
 FISH, qPCR, MLPA, aCGH, or standard G-banded chromosome analysis
 
 Unknown
 Unknown
 Unknown
 RPA4,NDUFB5P2,DIAPH2
 
 krumm_15_ASD_discovery_cases-case12834.p1
 Omni2.5-4v1
 
 Maternal
 Simplex
 Segregated
 DIAPH2,DIAPH2-AS1
 
 krumm_15_ASD_discovery_cases-case12834.p1
 Omni2.5-4v1
 
 Maternal
 Simplex
 Segregated
 RPA4,NDUFB5P2,DIAPH2
 
 lesca_12_EP_discovery_cases-case1-1813
 
 
 Unknown
 Unknown
 Unknown
 MIR548M,CALM1P1,RNA5SP510,HNRNPDLP3,HNRNPDLP1,RPS7P13
 
 mosca_16_DCD_discovery_cases-case128203
 
 
 Unknown
 Multi-generational
 Unknown
 RN7SKP194
 
 pinto_10_ASD_discovery_cases-case5209_3
 qPCR
 
 maternal
 Multiplex
 Segregated
 DIAPH2 intronic
 
 pinto_10_ASD_discovery_cases-case5440_3
 Agilent1M
 
 maternal
 NA
 NA
 
 
 prasad_12_ASD_discovery_cases-case117482L
 
 
 Unknown
 Unknown
 Unknown
 DIAPH2
 
 prasad_12_ASD_discovery_cases-case120617
 
 
 Unknown
 Unknown
 Unknown
 0 genes
 
 prasad_12_ASD_discovery_cases-case161584L
 
 
 Unknown
 Unknown
 Unknown
 DIAPH2
 
 prasad_12_ASD_discovery_cases-case47556
 
 
 Unknown
 Unknown
 Unknown
 DIAPH2
 
 prasad_12_ASD_discovery_cases-case89851L
 
 
 Unknown
 Unknown
 Unknown
 DIAPH2
 
 sanders_11_ASD_discovery_cases-11025.p1
 
 
 Both parents
 Simplex (trio)
 NA
 
 
 sanders_11_ASD_discovery_cases-11794.p1
 
 
 Unknown
 Simplex (quad-proband matched)
 Segregated
 
 
 sanders_11_ASD_discovery_cases-12275.p1
 
 
 Maternal
 Simplex (quad-proband matched)
 Not segregated
 
 
 sanders_11_ASD_discovery_cases-12572.p1
 
 
 Maternal
 Simplex (quad-proband matched)
 Not segregated
 
 
 sanders_11_ASD_discovery_cases-12828.p1
 
 
 Maternal
 Simplex (trio)
 NA
 
 
 sanders_11_ASD_discovery_cases-12924.p1
 
 
 Maternal
 Simplex (quad-proband matched)
 Not segregated
 DIAPH2,DIAPH2-AS1
 

Controls

Patient ID
Validation Description
Primary Disorder Inheritence
Inheritence
Family Profile
Disease Segregation
Gene Content
Altered Gene Expression
engchuan_15_ASD_discovery_controls-controlB178717_1007875826
 
 
  Unknown
 
 
 
 
engchuan_15_ASD_discovery_controls-controlB883531_1007844959
 
 
  Unknown
 
 
 
 
engchuan_15_ASD_discovery_controls-controlB954474_1007874921
 
 
  Unknown
 
 
 
 
engchuan_15_ASD_discovery_controls-controlB963921_1007872666
 
 
  Unknown
 
 
 
 
engchuan_15_ASD_discovery_controls-controlB995629_1007855005
 
 
  Unknown
 
 
 
 
engchuan_15_ASD_discovery_controls-controlHABC_902798_902798
 
 
  Unknown
 
 
 
 
engchuan_15_ASD_discovery_controls-controlHABC_902835_902835
 
 
  Unknown
 
 
 
 
nord_11_ASD_discovery_controls-04C27275
 
 
 
 
 
  0 genes
 
nord_11_ASD_discovery_controls-04C27520
 
 
 
 
 
  0 genes
 
sanders_11_ASD_discovery_controls-11277.s1
 
 
  Paternal
  Simplex (quad)
  NA
 
 
sanders_11_ASD_discovery_controls-11330.s1
 
 
  Both parents
  Simplex (quad)
  NA
 
 
sanders_11_ASD_discovery_controls-11530.s1
 
 
  Maternal
  Simplex (quad)
  NA
 
 
sanders_11_ASD_discovery_controls-11715.s1
 
 
  Paternal
  Simplex (quad)
  NA
  DIAPH2
 
sanders_11_ASD_discovery_controls-11766.s1
 
 
  Both parents
  Simplex (quad)
  NA
 
 
sanders_11_ASD_discovery_controls-11982.s1
 
 
  Maternal
  Simplex (quad)
  NA
 
 
sanders_11_ASD_discovery_controls-12006.s1
 
 
  Both parents
  Simplex (quad)
  NA
 
 
sanders_11_ASD_discovery_controls-12060.s1
 
 
  Both parents
  Simplex (quad)
  NA
  DIAPH2
 
sanders_11_ASD_discovery_controls-12231.s1
 
 
  Maternal
  Simplex (quad)
  NA
 
 
sanders_11_ASD_discovery_controls-12250.s1
 
 
  Paternal
  Simplex (quad)
  NA
  DIAPH2
 
sanders_11_ASD_discovery_controls-12275.s1
 
 
  Maternal
  Simplex (quad)
  NA
 
 
sanders_11_ASD_discovery_controls-12281.s1
 
 
  Maternal
  Simplex (quad)
  NA
 
 
sanders_11_ASD_discovery_controls-12323.s1
 
 
  Both parents
  Simplex (quad)
  NA
 
 
sanders_11_ASD_discovery_controls-12435.s1
 
 
  Paternal
  Simplex (quad)
  NA
  DIAPH2
 
sanders_11_ASD_discovery_controls-12494.s1
 
 
  Maternal
  Simplex (quad)
  NA
 
 
sanders_11_ASD_discovery_controls-12507.s1
 
 
  Both parents
  Simplex (quad)
  NA
 
 
sanders_11_ASD_discovery_controls-12653.s1
 
 
  Both parents
  Simplex (quad)
  NA
 
 
sanders_11_ASD_discovery_controls-12736.s1
 
 
  Maternal
  Simplex (quad)
  NA
 
 
sanders_11_ASD_discovery_controls-12790.s1
 
 
  Paternal
  Simplex (quad)
  NA
  DIAPH2
 
sanders_11_ASD_discovery_controls-12888.s1
 
 
  Paternal
  Simplex (quad)
  NA
 
 
sanders_11_ASD_discovery_controls-12956.s1
 
 
  Maternal
  Simplex (quad)
  NA
 
 
sanders_11_ASD_discovery_controls-13226.s1
 
 
  Maternal
  Simplex (quad)
  NA
 
 

No Animal Model Data Available
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