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Xp22.33/Yp11.32CNV Type: Duplication


Largest CNV size: 704979 bp

Statistics Box:
Number of Reports: 5



Summary Information

This duplication, which may reside either within the Xp22.33 or Yp11.32 locus, contains the PPP2R3B and SHOX genes.

Additional Locus Information

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USCS Symbol             NCBI Symbol

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            Decipher Symbol

References

Major Reports

Title
Author, Year
Report Class
CNV Type
Copy number variations associated with autism spectrum disorders contribute to a spectrum of neurodevelopmental disorders.
Duplication
Chromosomal microarray analysis of consecutive individuals with autism spectrum disorders or learning disability presenting for genetic services.
Duplication
Microduplications at the pseudoautosomal SHOX locus in autism spectrum disorders and related neurodevelopmental conditions.
Deletion-Duplication
Array-CGH Analysis in a Cohort of Phenotypically Well-Characterized Individuals with Essential Autism Spectrum Disorders.
Duplication

Minor Reports

Title
Author, Year
Report Class
CNV Type
Diagnostic yield of array comparative genomic hybridization in adults with autism spectrum disorders.
Duplication

Cases

Cohort ID
Author, Year
Descripton
Cohort Size
Diagnosis
Age
Gender
CNV Size
Deletion
Duplication
Total CNV's
 napoli_17_ASD_discovery_cases
 Children recruited between June 2009 and December 2014 at the Child Neuopsychiatry Unit of Bambino Gesu Children's Hospital, IRCCS, Rome, Italy
 133
 Inclusion criteria included a clinical diagnosis of pervasive developmental disorders (PDD) and of ASD, according to DSM-IV-TR and DSM-5 criteria, respectively, and fewer than six dysmorphic features (children with six or more minor anomalies and/or systemic congenital malformations, such as congenital heart defects, were excluded). Cognitive or developmental level was assessed by the brief intelligence quotient (IQ) from Leiter-R or by the general quotient (GQ) from Griffiths Mental Development Scales Extended Revised for age 2-8, GMDS-ER 2-8 (mean IQ, 73.7 24.3). The calibrated severity score (CSS) index was also calculated to quantify autism symptoms independently (median score of 7, r
 Mean, 6.7 3.0 years
 84.96% Male
 327000
 0
 1
 1
 roberts_13_ASD/DD/ID_discovery_cases
 Consecutive patients referred with either ASD or learning disability for genetic services at the University of Kansas Medical Center from 2009-2012
 215
 ASD (n=65) or learning disability (LD; n=150); learning disability defined as developmental delay (infants & children) and/or intellectual disability (older children & adults)
 Mean, 10 9.7 yrs.; Range 5 mos.-52 yrs.
 65.12% Male
 703000
 0
 1
 1
 rosenfeld_10_ASD_discovery_cases
 Samples submitted between 3/2004 and 7/2008 that had ASD as indication for study (Signature Genomic Labs, Spokane, WA)
 1461
 ASD
 
 
 704979
 0
 2
 2
 stobbe_13_ASD_discovery_cases
 Adult ASD cases referred for genetic evaluation of autism from July 2009 through April 2012
 36
 Diagnosis of ASD confirmed in 34 of 36 patients; diagnosis of ASD based on DSM-IV criteria and confirmed by chart review by neurologist specializing in autism.
 Range, 18-45 yrs. (mean 25.3 yrs.)
 77.78% Male
 342480
 0
 1
 1
 tropeano_16_ASD/NDD_replication_cases
 Cases with neurodevelopmental disorders (NDD), including ASD, referred for clinical genetic testing in the United Kingdom [n=9650; Brain and Body Genetic Resource Exchange (BBGRE)] and Canada (n=9207; the Hospital for Sick Children, Toronto, Canada)
 18857
 Cases present with one or more of the following reasons for referral for genetic testing: ASD (n=3541), developmental delay, neurocognitive disability, ADHD, psychoses and other behavioral abnormalities, speech/language delay, learning disability, motor delay, microcephaly, macrocephaly, structural brain abnormality, epilepsy/seizures, abnormal muscle tone, and other neurological problems.
 N/A
 BBGRE cohort, 67% Male; Hospit
 799473
 3
 38
 41
 tropeano_16_ASD_discovery_cases
 ASD cases from the Maudsley Adult Autism clinic discovery series (Maudsley Hospital, London, United Kingdom)
 90
 Diagnosis of ASD according to ICD-10 and confirmed using ADOS and ADI-R.
 Adult age (20 yrs.+)
 N/A
 88845
 0
 1
 1

Controls

Cohort ID
Author, Year
Descripton
Cohort Size
Diagnosis
Age
Gender
CNV Size
Deletion
Duplication
Total CNV's
 tropeano_16_ASD/NDD_replication_controls
 Population-based controls, including 11589 individuals whose microarray data analyzed at the Centre for Applied Genetics (TCAG, Toronto, Canada) and 1005 controls from Population Diagnostics (PDx, Melville, USA)
 12594
 Control
 N/A
 45.09% Male
 758511
 2
 9
 11

Cases

Cohort ID
Geographical Ancestry
Discovery Method
Platform
Algorithm
Software
Validation Method
 napoli_17_ASD_discovery_cases
  Italy
 aCGH
  Agilent Human Genome 4x180K
 ADM-2
 Feature Extraction v.10.5, Agilent Genomic Workbench Lite Edition v.7.4
 RT-PCR
 roberts_13_ASD/DD/ID_discovery_cases
  N/A
 aCGH
  105K or 180K oligonucleotide microarray
 
 Nexus Copy Number (BioDiscovery)
 BACs aCGH or FISH
 rosenfeld_10_ASD_discovery_cases
 
 aCGH
  BACs aCGH, whole-genome oligo-aCGH
 
 
 FISH
 stobbe_13_ASD_discovery_cases
  N/A
 aCGH
  NimbleGen CGX-3v1.0
 ADM-1
 NimbleScan 2.5, DNA Analytics 4.0
 None
 tropeano_16_ASD/NDD_replication_cases
  United Kingdom and Canada
 aCGH
  Agilent 60K, OGT Cytosure 4x180K
 ADM-2
 Agilent Feature Extraction, Agilent Genomic Workbench, Agilent Feature Extraction v.10.7.11, OGT Cyt
 aCGH
 tropeano_16_ASD_discovery_cases
  United Kingdom
 aCGH
  Agilent 60K
 ADM-2
 Agilent Feature Extraction, Agilent Genomic Workbench
 MLPA, aCGH

Controls

Cohort ID
Geographical Ancestry
Discovery Method
Platform
Algorithm
Software
Validation Method
  tropeano_16_ASD/NDD_replication_controls
  United States and Canada, 79% European ancestry
  aCGH, array SNP
  Affymetrix SNP 6.0, Agilent 1 M
  ADM-2
  Birdsuite, iPattern, Affymetrix Genotyping Console, DNA Analytics v4.0.85, and DNAcopy
 

Cases

Patient ID
Author, Year
Age
Gender
Primary Diagnosis
Clinical Profile
Cognitive Profile
CNV Start
CNV End
CNV Size
Genome Build
Type Method
Validation
  napoli_17_ASD_discovery_cases-case15
 N/A
 M
 ASD
 Case diagnosed with ASD according to DSM-5 criteria. Congenital anomalies: none. Dysmorphic features: fewer than six. Karyotype: 46,XY
 
 1835694/1785694
 2162399/2112399
  327000
 GRCh37
 Duplication
 Yes
  roberts_13_ASD/DD/ID_discovery_cases-DD/IDcase30
 2 yrs.
 M
 Learning disability (developmental delay/intellectual disability)
 Immune deficiency
 
 644569
 1164081
  519513
 GRCh38
 Duplication
 Yes
  rosenfeld_10_ASD_discovery_cases-case13744
 NA
 NA
 ASD
 NA
 NA
 262578
 967557
  704979
 Unknown
 Duplication
 Yes
  rosenfeld_10_ASD_discovery_cases-case3084
 NA
 NA
 ASD
 NA
 NA
 262578
 967557
  704979
 Unknown
 Duplication
 Yes
  stobbe_13_ASD_discovery_cases-case22
 27 yrs.
 M
 Autism, ID, and epilepsy
 Family history: 1 sister with dyslexia. Karyotype: not performed. Fragile X testing: normal.
 Intellectual disability
 1606668
 1949148
  342481
 GRCh38
 Duplication
 No
  tropeano_16_ASD/NDD_replication_cases-case10
 < 2 years
 M
 Structural brain abnormalities
 Partial corpus callosum and septum pellucidum agenesis; very thin corpus callosum posteriorly, possibly affecting ventricular shape, Bilateral fixed talipes
 
 169063/119063
 618036/568036
  448974
 GRCh37
 Duplication
 Yes
  tropeano_16_ASD/NDD_replication_cases-case16
 10- 16 years
 M
 Developmental delay and epilepsy
 Macrocephaly, developmental delay, Epilepsy, physical dysmorphism
 
 209659/159659
 664616/614616
  454958
 GRCh37
 Duplication
 Yes
  tropeano_16_ASD/NDD_replication_cases-case17
 4- 10 years
 M
 ASD and intellectual disability
 Tall stature, feeding difficulties, increased appetite, delayed (atypical) cognitive development, delayed motor development, Speech & language development disorder, Autism spectrum disorder, Slightly lower muscle tone, Joint hypermobility, Aggression, Obssessions with visiting toilet. Family history: father has behavioral problems.
 delayed (atypical) cognitive development
 219608/169608
 1019080/969080
  799473
 GRCh37
 Duplication
 Yes
  tropeano_16_ASD/NDD_replication_cases-case18
 44- 50 years
 M
 Epilepsy
 Epilepsy (absences from 11, generalized tonic)
 
 286523/236523
 618036/568036
  331514
 GRCh37
 Duplication
 Yes
  tropeano_16_ASD/NDD_replication_cases-case20
 < 4 years
 M
 Developmental delay
 Developmental delay, Hypotonia
 
 286524/236524
 664616/614616
  378093
 GRCh37
 Duplication
 Yes
  tropeano_16_ASD/NDD_replication_cases-case22
 4- 10 years
 M
 ASD and developmental delay
 Developmental delay, PDD-NOS. Family history: Father has OCD (not available for testing), mother had school problems (not available for testing), Family history of language problems.
 
 296482/246482
 624771/574771
  328289
 GRCh37
 Duplication
 Yes
  tropeano_16_ASD/NDD_replication_cases-case26
 < 4 years
 M
 Developmental delay
 Developmental delay, Learning disability
 Learning disability
 330876/280876
 851864/801864
  520988
 GRCh37
 Duplication
 Yes
  tropeano_16_ASD/NDD_replication_cases-case28
 < 4 years
 M
 ASD and intellectual disability
 Overweight, moderate cognitive delay (IQ 35-49), Speech & language development disorder, Learning difficulties, Autism spectrum disorder, Vision impairment (Squint)
 Moderate cognitive delay (IQ 35-49)
 342016/292016
 774548/724548
  432533
 GRCh37
 Duplication
 Yes
  tropeano_16_ASD/NDD_replication_cases-case3
 10-16 years
 M
 ADHD and developmental delay
 Developmental delay (problems reported at 5 years, none prior), learning difficulties, ADHD, short attention span, poor concentration. Family history: father had developmental delay and ADHD as a child (not available for testing), Brother (different father) has Aspergers syndrome, cousin (maternal) is dyslexic.
 Learning difficulties
 61528/11528
 774548/724548
  713021
 GRCh37
 Duplication
 Yes
  tropeano_16_ASD/NDD_replication_cases-case33
 4- 10 years
 M
 Developmental delay
 Developmental delay
 
 352512/302512
 596131/546131
  243619
 GRCh37
 Duplication
 Yes
  tropeano_16_ASD/NDD_replication_cases-case37
 4- 10 years
 M
 Developmental delay and ADHD
 Developmental delay, Langauge delay, learning disability, ADHD, congenital deafness
 Learning disability
 352512/302512
 596131/546131
  243619
 GRCh37
 Duplication
 Yes
  tropeano_16_ASD/NDD_replication_cases-case38
 10- 16 years
 M
 ASD and developmental delay
 Developmental delay, ASD
 
 352512/302512
 596131/546131
  243619
 GRCh37
 Duplication
 Yes
  tropeano_16_ASD/NDD_replication_cases-case4
 4-10 years
 M
 Developmental delay
 Developmental delay, learning difficulties, behavioral problems
 Learning difficulties
 154061/104061
 658258/608258
  504198
 GRCh37
 Duplication
 Yes
  tropeano_16_ASD/NDD_replication_cases-case41
 < 3 years
 M
 Developmental delay
 Developmental delay, Obstructive hydrocephalus
 
 380444/330444
 598916/548916
  218472
 GRCh37
 Duplication
 Yes
  tropeano_16_ASD/NDD_replication_cases-case45
 4- 10 years
 M
 Developmental delay
 Developmental delay
 
 416383/366383
 787363/737363
  370980
 GRCh37
 Duplication
 Yes
  tropeano_16_ASD/NDD_replication_cases-case5
 4-10 years
 M
 ASD
 Autism, acute language regression
 
 154061/104061
 664616/614616
  510556
 GRCh37
 Duplication
 Yes
  tropeano_16_ASD/NDD_replication_cases-case52
 14- 20 years
 M
 Motor and speech delay
 Delayed motor development (walked at 2 years), speech delay, vision impairment, Hypertelorism, Facial asymmetry, Hemifacial microsomia, Hypoplasia left mandible, Dysplastic left ear, Clinodactyly, other skeletal abnormalities (e.g. scoliosis)
 
 481939/431939
 618036/568036
  136098
 GRCh37
 Duplication
 Yes
  tropeano_16_ASD/NDD_replication_cases-case53
 4- 10 years
 M
 Developmental delay and epilepsy
 Global developmental delay, epilepsy, obstructive sleep apnea
 
 481939/431939
 618036/568036
  136098
 GRCh37
 Duplication
 Yes
  tropeano_16_ASD/NDD_replication_cases-case55
 < 4 years
 M
 ASD
 Autism spectrum disorder
 
 481939/431939
 664616/614616
  182678
 GRCh37
 Duplication
 Yes
  tropeano_16_ASD/NDD_replication_cases-case57
 4- 10 years
 F
 Motor difficulties
 Poor coordination, difficulties with fine motor movements, autistic traits, sleep problems, Upslanted palpebral fissures, Narrow short nose, Thin lips. Family history: Father had behavioural problems as a child and history of violence as a teenager and becomes stressed at work in new situations; Brother has ASD; Paternal brother has dyslexia and his son has ASD/ADHD.
 
 521204
 858508
  337305
 GRCh38
 Duplication
 Yes
  tropeano_16_ASD/NDD_replication_cases-case59
 < 3 years
 M
 Speech and language delay
 Speech & language development disorder
 
 481939/431939
 998152/948152
  516214
 GRCh37
 Duplication
 Yes
  tropeano_16_ASD/NDD_replication_cases-case62
 4- 10 years
 M
 Developmental delay
 Developmental delay, speech delay, learning difficulties
 Learning difficulties
 517113/467113
 697271/647271
  180159
 GRCh37
 Duplication
 Yes
  tropeano_16_ASD/NDD_replication_cases-case63
 10- 16 years
 M
 ASD
 Autism, behavioral problems, Scholastic difficulties
 
 517113/467113
 742860/692860
  225748
 GRCh37
 Duplication
 Yes
  tropeano_16_ASD/NDD_replication_cases-case66
 < 4 years
 M
 ASD and developmental delay
 Developmental delay, language delay, ASD
 
 539198/489198
 877796/827796
  338598
 GRCh37
 Duplication
 Yes
  tropeano_16_ASD/NDD_replication_cases-case68
 4- 10 years
 M
 Developmental delay
 Short stature, developmental delay, speech and language delay. Family history: Father attended a special school, current alcohol/drug abuse (not available for testing); Grandfather (paternal) had dyslexia; Grandmother (maternal) has severe depression.
 
 550457/500457
 618036/568036
  67580
 GRCh37
 Duplication
 Yes
  tropeano_16_ASD/NDD_replication_cases-case69
 < 4 years
 M
 ASD, developmental delay and intellectual disability
 Moderate cognitive delay (IQ 35-49; for adults mental age 6-9 yrs), global developmental delay, skin tags.
 Moderate cognitive delay (IQ 35-49; for adults mental age 6-9 yrs)
 550457/500457
 620326/570326
  69870
 GRCh37
 Duplication
 Yes
  tropeano_16_ASD/NDD_replication_cases-case70
 14- 20 years
 M
 Developmental delay and epilepsy
 Severe developmental delay, Speech and language delay and disfluency, Severe epilepsy, Bifid uvula (yet difficult to assess), Splint on left foot. Family history: Female twin has language delay; Eldest brother has Asperger's.
 
 550457/500457
 970747/920747
  420291
 GRCh37
 Duplication
 Yes
  tropeano_16_ASD/NDD_replication_cases-case71
 4- 10 years
 M
 ASD, ADHD, and developmental delay
 Developmental delay, Learning disability, ASD, ADHD
 Learning disability
 556108/506108
 623246/573246
  67138
 GRCh37
 Duplication
 Yes
  tropeano_16_ASD/NDD_replication_cases-case75
 < 2 year
 M
 Hearing impairment
 Unilateral sensorineural hearing loss, Hypoxic-ischaemic encephalopathy at birth
 
 584507/534507
 920279/870279
  335773
 GRCh37
 Duplication
 Yes
  tropeano_16_ASD/NDD_replication_cases-case78
 < 2 year
 M
 Developmental delay
 Developmental delay, autistic traits, social communication and interaction problems, Wide epicanthal folds. Family history: Mother has family history of mental health problems; Maternal uncle has ADHD, cousin has autism, dyslexia, ADHD and Tourette syndrome.
 
 590938/540938
 1259140/1209140
  668203
 GRCh37
 Duplication
 Yes
  tropeano_16_ASD/NDD_replication_cases-case81
 4- 10 years
 M
 Developmental delay and ADHD
 Developmental delay, Tall stature, Weight for age is >97th percentile, learning disability, ADHD
 Learning disability
 605689/555689
 1232802/1182802
  627113
 GRCh37
 Duplication
 Yes
  tropeano_16_ASD/NDD_replication_cases-case82
 < 3 years
 M
 Developmental delay
 Developmental delay
 
 605689/555689
 1232802/1182802
  627113
 GRCh37
 Duplication
 Yes
  tropeano_16_ASD/NDD_replication_cases-case83
 14- 20 years
 M
 Developmental delay
 Developmental delay, speech articulation problems, Obesity (morbid), mild facial dysmorphology, multiple congenital anomalies.
 
 605689/555689
 1232802/1182802
  627113
 GRCh37
 Duplication
 Yes
  tropeano_16_ASD/NDD_replication_cases-case84
 4- 10 years
 M
 ASD
 Asperger's syndrome, aggressive behavior started at 18 months, joint laxity in hands. Family history: Father has temper control issues (not available for testing),
 
 607140/557140
 1259140/1209140
  652001
 GRCh37
 Duplication
 Yes
  tropeano_16_ASD/NDD_replication_cases-case85
 4- 10 years
 M
 ASD, ADHD, and developmental delay
 Developmental delay, Asperger's syndrome, ADHD. Family history: Father has ADHD and history of violence; Paternal half-sister has language delay; Grandmother (paternal) had fibromyalgia.
 
 607140/557140
 1259140/1209140
  652001
 GRCh37
 Duplication
 Yes
  tropeano_16_ASD/NDD_replication_cases-case9
 < 3 years
 M
 ASD and developmental delay
 Developmental delay, ASD
 
 162379/112379
 598916/548916
  436537
 GRCh37
 Duplication
 Yes
  tropeano_16_ASD/NDD_replication_cases-case90
 4- 10 years
 M
 ASD and developmental delay
 Borderline short stature (3rd - 5th centile), very premature birth, Delayed cognitive development, Gross motor delay, Fine motor delay, Speech delay, made good progress at school, Autism spectrum disorder, Vision impairment (left convergent squint), Ventricular haemorrhage in neonatal period, Reduced movement right side, Facial dysmorphism, including hypertelorism, Round eyes wide set, Broad nasal bridge, Long tapering fingers. Family history: Mother has schizophrenia, epilepsy, social communication difficulties and addictive behavior (not available for testing).
 Delayed cognitive development
 611307/561307
 1019080/969080
  407774
 GRCh37
 Duplication
 Yes
  tropeano_16_ASD/NDD_replication_cases-case91
 < 3 years
 M
 Developmental delay
 Developmental delay, Speech & language development disorder, Cerebral palsy unilateral, Abnormal tone and involuntary movements
 
 611307/561307
 1019080/969080
  407774
 GRCh37
 Duplication
 Yes
  tropeano_16_ASD/NDD_replication_cases-case92
 14- 20 years
 M
 Developmental delay
 Developmental delay, recurrent infections
 Developmental delay
 61090/11090
 774548/724548
  713459
 GRCh37
 Deletion
 No
  tropeano_16_ASD/NDD_replication_cases-case96
 10- 16 years
 M
 ASD and developmental delay
 Developmental delay, ASD
 Developmental delay
 492059/442059
 1019941/969941
  527882
 GRCh37
 Deletion
 No
  tropeano_16_ASD/NDD_replication_cases-case98
 14- 20 years
 M
 Developmental delay and intellectual disability
 Developmental delay, cognitive impairment, short stature
 Developmental delay, cognitive impairment
 519455/469455
 592812/542812
  73357
 GRCh37
 Deletion
 No
  tropeano_16_ASD_discovery_cases-MAAS20
 20-29 yrs.
 M
 ASD
 Case diagnosed with autism based on ICD-10 research criteria; diagnosis confirmed using ADOS and ADI-R. Number of additional co-morbid mental health conditions (diagnosed in accordance with ICD-10R or DSM-IV) at time of initital assessment: 1.
 
 1378591/1328591
 1467436/1417436
  88845
 GRCh37
 Duplication
 Yes

Controls

Patient ID
Author, Year
Age
Gender
Primary Diagnosis
Clinical Profile
Cognitive Profile
CNV Start
CNV End
CNV Size
Genome Build
Type Method
Validation
  tropeano_16_ASD/NDD_replication_controls-control11
  N/A
  M
  Control
  Control cohort: Population Diagnostics (PDx)
 
  441610/391610
  723851/673851
  282241
  GRCh37
  Duplication
  No
  tropeano_16_ASD/NDD_replication_controls-control13
  N/A
  M
  Control
  Control cohort: Starr County Diabetes study
 
  468364/418364
  770203/720203
  301839
  GRCh37
  Duplication
  No
  tropeano_16_ASD/NDD_replication_controls-control14
  N/A
  M
  Control
  Control cohort: Geneva NHS/HPFS Diabetes study
 
  468364/418364
  1226875/1176875
  758511
  GRCh37
  Duplication
  No
  tropeano_16_ASD/NDD_replication_controls-control2
  N/A
  M
  Control
  Control cohort: Geneva NHS/HPFS Diabetes study
 
  297021/247021
  650983/600983
  353962
  GRCh37
  Duplication
  No
  tropeano_16_ASD/NDD_replication_controls-control29
  N/A
  M
  Control
  Control cohort: HapMap (Phase 3) controls
 
  492076/442076
  647550/597550
  155474
  GRCh37
  Deletion
  No
  tropeano_16_ASD/NDD_replication_controls-control3
  N/A
  M
  Control
  Control cohort: POPGEN
 
  297021/247021
  663279/613279
  366258
  GRCh37
  Duplication
  No
  tropeano_16_ASD/NDD_replication_controls-control30
  N/A
  M
  Control
  Control cohort: Ottawa Heart Institute controls
 
  582185/532185
  643885/593885
  61700
  GRCh37
  Deletion
  No
  tropeano_16_ASD/NDD_replication_controls-control4
  N/A
  M
  Control
  Control cohort: Geneva NHS/HPFS Diabetes study
 
  297021/247021
  665405/615405
  368384
  GRCh37
  Duplication
  No
  tropeano_16_ASD/NDD_replication_controls-control5
  N/A
  M
  Control
  Control cohort: POPGEN
 
  297021/247021
  770203/720203
  473182
  GRCh37
  Duplication
  No
  tropeano_16_ASD/NDD_replication_controls-control6
  N/A
  M
  Control
  Control cohort: Ontario Population Genomics Platform (OPGP)
 
  309434/259434
  636365/586365
  326931
  GRCh37
  Duplication
  No
  tropeano_16_ASD/NDD_replication_controls-control9
  N/A
  M
  Control
  Control cohort: Geneva NHS/HPFS Diabetes study
 
  353979/303979
  1008051/958051
  654072
  GRCh37
  Duplication
  No

Cases

Patient ID
Validation Description
Primary Disorder Inheritence
Inheritence
Family Profile
Disease Segregation
Gene Content
Altered Gene Expression
 napoli_17_ASD_discovery_cases-case15
 RT-PCR
 
 Unknown
 
 
 DHRSX
 
 roberts_13_ASD/DD/ID_discovery_cases-DD/IDcase30
 BACs aCGH or FISH
 
 Paternal
 Unknown
 Unknown
 RPL14P5,SHOX
 
 rosenfeld_10_ASD_discovery_cases-case13744
 FISH
 
 Unknown
 Unknown
 Unknown
 PPP2R3B,SHOX
 
 rosenfeld_10_ASD_discovery_cases-case3084
 FISH
 
 Unknown
 Unknown
 Unknown
 PPP2R3B,SHOX
 
 stobbe_13_ASD_discovery_cases-case22
 
 
 Unknown
 Multiplex
 Unknown
 ASMT
 
 tropeano_16_ASD/NDD_replication_cases-case10
 aCGH
 
 Unknown
 Unknown
 Unknown
 SHOX (exons 1, 2, 2a, 3, 4, 5, 6a, 7-1, 7-2, 7-3), PLCXD1, GTPBP6, PPP2R3B
 
 tropeano_16_ASD/NDD_replication_cases-case16
 aCGH
 
 Paternal
 Unknown
 Unknown
 SHOX (exons 1, 2, 2a, 3, 4, 5, 6a, 7-1, 7-2, 7-3), PLCXD1 (Exons 7-9), GTPBP6, PPP2R3B
 
 tropeano_16_ASD/NDD_replication_cases-case17
 aCGH
 Possibly paternal
 Paternal
 Multi-generational
 Possibly segregated
 SHOX (exons 1, 2, 2a, 3, 4, 5, 6a, 7-1, 7-2, 7-3, 6b), PLCXD1 (Exons 9), GTPBP6, PPP2R3B
 
 tropeano_16_ASD/NDD_replication_cases-case18
 aCGH
 
 Unknown
 Unknown
 Unknown
 SHOX (exons 1, 2, 2a, 3, 4, 5, 6a, 7-1, 7-2, 7-3), PPP2R3B
 
 tropeano_16_ASD/NDD_replication_cases-case20
 aCGH
 
 Unknown
 Unknown
 Unknown
 SHOX (exons 1, 2, 2a, 3, 4, 5, 6a, 7-1, 7-2, 7-3, 6b), PPP2R3B
 
 tropeano_16_ASD/NDD_replication_cases-case22
 aCGH
 Possibly both parents
 Unknown
 Multi-generational
 Unknown
 SHOX (exons 1, 2, 2a, 3, 4, 5, 6a, 7-1, 7-2, 7-3, 6b), PPP2R3B (Exon 1-12)
 
 tropeano_16_ASD/NDD_replication_cases-case26
 aCGH
 
 Unknown
 Unknown
 Unknown
 SHOX (exons 1, 2, 2a, 3, 4, 5, 6a, 7-1, 7-2, 7-3, 6b), PPP2R3B (Exon 1)
 
 tropeano_16_ASD/NDD_replication_cases-case28
 aCGH
 
 Unknown
 Unknown
 Unknown
 SHOX (exons 1, 2, 2a, 3, 4, 5, 6a, 7-1, 7-2, 7-3, 6b), PPP2R3B (Exon 1)
 
 tropeano_16_ASD/NDD_replication_cases-case3
 aCGH
 Possibly paternal
 Unknown
 Multi-generational
 Unknown
 SHOX (exons 1, 2, 2a, 3, 4, 5, 6a, 7-1, 7-2, 7-3, 6b), PLCXD1, GTPBP6, PPP2R3B
 
 tropeano_16_ASD/NDD_replication_cases-case33
 aCGH
 
 Unknown
 Unknown
 Unknown
 SHOX (exons 1, 2, 2a, 3)
 
 tropeano_16_ASD/NDD_replication_cases-case37
 aCGH
 
 Unknown
 Unknown
 Unknown
 SHOX (exons 1, 2, 2a, 3)
 
 tropeano_16_ASD/NDD_replication_cases-case38
 aCGH
 
 Unknown
 Unknown
 Unknown
 SHOX (exons 1, 2, 2a, 3)
 
 tropeano_16_ASD/NDD_replication_cases-case4
 aCGH
 
 Unknown
 Unknown
 Unknown
 SHOX (exons 1, 2, 2a, 3, 4, 5, 6a, 7-1, 7-2, 7-3, 6b), PLCXD1, GTPBP6, PPP2R3B
 
 tropeano_16_ASD/NDD_replication_cases-case41
 aCGH
 
 Unknown
 Unknown
 Unknown
 SHOX (exons 1, 2, 2a, 3)
 
 tropeano_16_ASD/NDD_replication_cases-case45
 aCGH
 
 Unknown
 Unknown
 Unknown
 SHOX (exons 1, 2, 2a, 3, 4, 5, 6a, 7-1, 7-2, 7-3, 6b)
 
 tropeano_16_ASD/NDD_replication_cases-case5
 aCGH
 
 Paternal
 Unknown
 Unknown
 SHOX (exons 1, 2, 2a, 3, 4, 5, 6a, 7-1, 7-2, 7-3, 6b), PLCXD1, GTPBP6, PPP2R3B
 
 tropeano_16_ASD/NDD_replication_cases-case52
 aCGH
 
 Unknown
 Unknown
 Unknown
 SHOX (exons 1, 2, 2a, 3, 4, 5, 6a, 7-1, 7-2, 7-3)
 
 tropeano_16_ASD/NDD_replication_cases-case53
 aCGH
 
 Paternal
 Unknown
 Unknown
 SHOX (exons 1, 2, 2a, 3, 4, 5, 6a, 7-1, 7-2, 7-3)
 
 tropeano_16_ASD/NDD_replication_cases-case55
 aCGH
 
 Paternal
 Unknown
 Unknown
 SHOX (exons 1, 2, 2a, 3, 4, 5, 6a, 7-1, 7-2, 7-3, 6b)
 
 tropeano_16_ASD/NDD_replication_cases-case57
 aCGH
 Possibly paternal
 Paternal
 Multi-generational
 Possibly segregated
 FABP5P13,KRT18P53,SHOX
 
 tropeano_16_ASD/NDD_replication_cases-case59
 aCGH
 
 Paternal
 Unknown
 Unknown
 SHOX (exons 1, 2, 2a, 3, 4, 5, 6a, 7-1, 7-2, 7-3, 6b)
 
 tropeano_16_ASD/NDD_replication_cases-case62
 aCGH
 
 Unknown
 Unknown
 Unknown
 SHOX (exons 1, 2, 2a, 3, 4, 5, 6a, 7-1, 7-2, 7-3, 6b)
 
 tropeano_16_ASD/NDD_replication_cases-case63
 aCGH
 
 Unknown
 Unknown
 Unknown
 SHOX (exons 1, 2, 2a, 3, 4, 5, 6a, 7-1, 7-2, 7-3, 6b)
 
 tropeano_16_ASD/NDD_replication_cases-case66
 aCGH
 
 Unknown
 Unknown
 Unknown
 SHOX (exons 1, 2, 2a, 3, 4, 5, 6a, 7-1, 7-2, 7-3, 6b)
 
 tropeano_16_ASD/NDD_replication_cases-case68
 aCGH
 
 Unknown
 Multi-generational
 Unknown
 SHOX (exons 1, 2, 2a, 3, 4, 5, 6a, 7-1, 7-2, 7-3)
 
 tropeano_16_ASD/NDD_replication_cases-case69
 aCGH
 
 Unknown
 Unknown
 Unknown
 SHOX (exons 1, 2, 2a, 3, 4, 5, 6a, 7-1, 7-2, 7-3, 6b)
 
 tropeano_16_ASD/NDD_replication_cases-case70
 aCGH
 
 Unknown (not maternal)
 Multiplex
 Unknown
 SHOX (exons 1, 2, 2a, 3, 4, 5, 6a, 7-1, 7-2, 7-3, 6b)
 
 tropeano_16_ASD/NDD_replication_cases-case71
 aCGH
 
 Unknown
 Unknown
 Unknown
 SHOX (exons 1, 2, 2a, 3, 4, 5, 6a, 7-1, 7-2, 7-3, 6b)
 
 tropeano_16_ASD/NDD_replication_cases-case75
 aCGH
 
 Unknown
 Unknown
 Unknown
 SHOX (exons 1, 2, 2a, 3, 4, 5, 6a, 7-1, 7-2, 7-3, 6b )
 
 tropeano_16_ASD/NDD_replication_cases-case78
 aCGH
 
 Unknown
 Multi-generational
 Unknown
 SHOX (exons 2, 2a, 3, 4, 5, 6a, 7-1, 7-2, 7-3, 6b)
 
 tropeano_16_ASD/NDD_replication_cases-case81
 aCGH
 
 Unknown
 Unknown
 Unknown
 SHOX (exons 7-1, 7-2, 7-3, 6b)
 
 tropeano_16_ASD/NDD_replication_cases-case82
 aCGH
 
 Unknown
 Unknown
 Unknown
 SHOX (exons 7-1, 7-2, 7-3, 6b)
 
 tropeano_16_ASD/NDD_replication_cases-case83
 aCGH
 
 Unknown
 Unknown
 Unknown
 SHOX (exons 7-1, 7-2, 7-3, 6b)
 
 tropeano_16_ASD/NDD_replication_cases-case84
 aCGH
 
 Unknown (not maternal)
 Unknown
 Unknown
 SHOX (exons 7-1, 7-2, 7-3, 6b)
 
 tropeano_16_ASD/NDD_replication_cases-case85
 aCGH
 Possibly paternal
 Paternal
 Multi-generational
 Possibly segregated
 SHOX (exons 7-1, 7-2, 7-3, 6b)
 
 tropeano_16_ASD/NDD_replication_cases-case9
 aCGH
 
 Unknown
 Unknown
 Unknown
 SHOX (exons 1, 2, 2a, 3), PLCXD1, GTPBP6, PPP2R3B
 
 tropeano_16_ASD/NDD_replication_cases-case90
 aCGH
 Possibly maternal
 Unknown
 Multi-generational
 Unknown
 SHOX (exons 7-1, 7-2, 7-3, 6b)
 
 tropeano_16_ASD/NDD_replication_cases-case91
 aCGH
 
 Unknown
 Unknown
 Unknown
 SHOX (exons 7-1, 7-2, 7-3, 6b)
 
 tropeano_16_ASD/NDD_replication_cases-case92
 
 
 Unknown
 Unknown
 Unknown
 SHOX (exons 1, 2, 2a, 3, 4, 5, 6a, 7-1, 7-2, 7-3, 6b), PLCXD1, GTPBP6, PPP2R3B
 
 tropeano_16_ASD/NDD_replication_cases-case96
 
 
 Unknown
 Unknown
 Unknown
 SHOX (exons 1, 2, 2a, 3, 4, 5, 6a, 7-1, 7-2, 7-3, 6b)
 
 tropeano_16_ASD/NDD_replication_cases-case98
 
 
 Unknown
 Unknown
 Unknown
 SHOX (exons 1, 2, 2a)
 
 tropeano_16_ASD_discovery_cases-MAAS20
 MLPA or aCGH
 
 Unknown
 Unknown
 Unknown
 CSF2RA,IL3RA
 

Controls

Patient ID
Validation Description
Primary Disorder Inheritence
Inheritence
Family Profile
Disease Segregation
Gene Content
Altered Gene Expression
tropeano_16_ASD/NDD_replication_controls-control11
 
 
  Unknown
 
 
  SHOX
 
tropeano_16_ASD/NDD_replication_controls-control13
 
 
  Unknown
 
 
  SHOX
 
tropeano_16_ASD/NDD_replication_controls-control14
 
 
  Unknown
 
 
  SHOX
 
tropeano_16_ASD/NDD_replication_controls-control2
 
 
  Unknown
 
 
  SHOX, PPP2R3B (exons 1-12)
 
tropeano_16_ASD/NDD_replication_controls-control29
 
 
  Unknown
 
 
  SHOX
 
tropeano_16_ASD/NDD_replication_controls-control3
 
 
  Unknown
 
 
  SHOX, PPP2R3B (exons 1-12)
 
tropeano_16_ASD/NDD_replication_controls-control30
 
 
  Unknown
 
 
  SHOX
 
tropeano_16_ASD/NDD_replication_controls-control4
 
 
  Unknown
 
 
  SHOX, PPP2R3B (exons 1-12)
 
tropeano_16_ASD/NDD_replication_controls-control5
 
 
  Unknown
 
 
  SHOX, PPP2R3B (exons 1-12)
 
tropeano_16_ASD/NDD_replication_controls-control6
 
 
  Unknown
 
 
  SHOX, PPP2R3B (exons 1-2)
 
tropeano_16_ASD/NDD_replication_controls-control9
 
 
  Unknown
 
 
  SHOX
 

No Animal Model Data Available
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