Xp22.33/Yp11.32CNV Type: Duplication
Largest CNV size: 704979 bp
Statistics Box:
Number of Reports: 5
Number of Reports: 5
Summary Information
This duplication, which may reside either within the Xp22.33 or Yp11.32 locus, contains the PPP2R3B and SHOX genes.
Additional Locus Information
References
Major Reports
Title
Author, Year
Report Class
CNV Type
Copy number variations associated with autism spectrum disorders contribute to a spectrum of neurodevelopmental disorders.
Duplication
Chromosomal microarray analysis of consecutive individuals with autism spectrum disorders or learning disability presenting for genetic services.
Duplication
Microduplications at the pseudoautosomal SHOX locus in autism spectrum disorders and related neurodevelopmental conditions.
Deletion-Duplication
Array-CGH Analysis in a Cohort of Phenotypically Well-Characterized Individuals with Essential Autism Spectrum Disorders.
Duplication
Minor Reports
Title
Author, Year
Report Class
CNV Type
Diagnostic yield of array comparative genomic hybridization in adults with autism spectrum disorders.
Duplication
Cases
Cohort ID
Author, Year
Descripton
Cohort Size
Diagnosis
Age
Gender
CNV Size
Deletion
Duplication
Total CNV's
napoli_17_ASD_discovery_cases
Children recruited between June 2009 and December 2014 at the Child Neuopsychiatry Unit of Bambino Gesu Children's Hospital, IRCCS, Rome, Italy
133
Inclusion criteria included a clinical diagnosis of pervasive developmental disorders (PDD) and of ASD, according to DSM-IV-TR and DSM-5 criteria, respectively, and fewer than six dysmorphic features (children with six or more minor anomalies and/or systemic congenital malformations, such as congenital heart defects, were excluded). Cognitive or developmental level was assessed by the brief intelligence quotient (IQ) from Leiter-R or by the general quotient (GQ) from Griffiths Mental Development Scales Extended Revised for age 2-8, GMDS-ER 2-8 (mean IQ, 73.7 24.3). The calibrated severity score (CSS) index was also calculated to quantify autism symptoms independently (median score of 7, r
Mean, 6.7 3.0 years
84.96% Male
327000
0
1
1
roberts_13_ASD/DD/ID_discovery_cases
Consecutive patients referred with either ASD or learning disability for genetic services at the University of Kansas Medical Center from 2009-2012
215
ASD (n=65) or learning disability (LD; n=150); learning disability defined as developmental delay (infants & children) and/or intellectual disability (older children & adults)
Mean, 10 9.7 yrs.; Range 5 mos.-52 yrs.
65.12% Male
703000
0
1
1
rosenfeld_10_ASD_discovery_cases
Samples submitted between 3/2004 and 7/2008 that had ASD as indication for study (Signature Genomic Labs, Spokane, WA)
1461
ASD
704979
0
2
2
stobbe_13_ASD_discovery_cases
Adult ASD cases referred for genetic evaluation of autism from July 2009 through April 2012
36
Diagnosis of ASD confirmed in 34 of 36 patients; diagnosis of ASD based on DSM-IV criteria and confirmed by chart review by neurologist specializing in autism.
Range, 18-45 yrs. (mean 25.3 yrs.)
77.78% Male
342480
0
1
1
tropeano_16_ASD/NDD_replication_cases
Cases with neurodevelopmental disorders (NDD), including ASD, referred for clinical genetic testing in the United Kingdom [n=9650; Brain and Body Genetic Resource Exchange (BBGRE)] and Canada (n=9207; the Hospital for Sick Children, Toronto, Canada)
18857
Cases present with one or more of the following reasons for referral for genetic testing: ASD (n=3541), developmental delay, neurocognitive disability, ADHD, psychoses and other behavioral abnormalities, speech/language delay, learning disability, motor delay, microcephaly, macrocephaly, structural brain abnormality, epilepsy/seizures, abnormal muscle tone, and other neurological problems.
N/A
BBGRE cohort, 67% Male; Hospit
799473
3
38
41
tropeano_16_ASD_discovery_cases
ASD cases from the Maudsley Adult Autism clinic discovery series (Maudsley Hospital, London, United Kingdom)
90
Diagnosis of ASD according to ICD-10 and confirmed using ADOS and ADI-R.
Adult age (20 yrs.+)
N/A
88845
0
1
1
Controls
Cohort ID
Author, Year
Descripton
Cohort Size
Diagnosis
Age
Gender
CNV Size
Deletion
Duplication
Total CNV's
tropeano_16_ASD/NDD_replication_controls
Population-based controls, including 11589 individuals whose microarray data analyzed at the Centre for Applied Genetics (TCAG, Toronto, Canada) and 1005 controls from Population Diagnostics (PDx, Melville, USA)
12594
Control
N/A
45.09% Male
758511
2
9
11
Cases
Cohort ID
Geographical Ancestry
Discovery Method
Platform
Algorithm
Software
Validation Method
napoli_17_ASD_discovery_cases
Italy
aCGH
Agilent Human Genome 4x180K
ADM-2
Feature Extraction v.10.5, Agilent Genomic Workbench Lite Edition v.7.4
RT-PCR
roberts_13_ASD/DD/ID_discovery_cases
N/A
aCGH
105K or 180K oligonucleotide microarray
Nexus Copy Number (BioDiscovery)
BACs aCGH or FISH
rosenfeld_10_ASD_discovery_cases
aCGH
BACs aCGH, whole-genome oligo-aCGH
FISH
stobbe_13_ASD_discovery_cases
N/A
aCGH
NimbleGen CGX-3v1.0
ADM-1
NimbleScan 2.5, DNA Analytics 4.0
None
tropeano_16_ASD/NDD_replication_cases
United Kingdom and Canada
aCGH
Agilent 60K, OGT Cytosure 4x180K
ADM-2
Agilent Feature Extraction, Agilent Genomic Workbench, Agilent Feature Extraction v.10.7.11, OGT Cyt
aCGH
tropeano_16_ASD_discovery_cases
United Kingdom
aCGH
Agilent 60K
ADM-2
Agilent Feature Extraction, Agilent Genomic Workbench
MLPA, aCGH
Controls
Cohort ID
Geographical Ancestry
Discovery Method
Platform
Algorithm
Software
Validation Method
tropeano_16_ASD/NDD_replication_controls
United States and Canada, 79% European ancestry
aCGH, array SNP
Affymetrix SNP 6.0, Agilent 1 M
ADM-2
Birdsuite, iPattern, Affymetrix Genotyping Console, DNA Analytics v4.0.85, and DNAcopy
Cases
Patient ID
Author, Year
Age
Gender
Primary Diagnosis
Clinical Profile
Cognitive Profile
CNV Start
CNV End
CNV Size
Genome Build
Type Method
Validation
napoli_17_ASD_discovery_cases-case15
N/A
M
ASD
Case diagnosed with ASD according to DSM-5 criteria. Congenital anomalies: none. Dysmorphic features: fewer than six. Karyotype: 46,XY
1835694/1785694
2162399/2112399
327000
GRCh37
Duplication
Yes
roberts_13_ASD/DD/ID_discovery_cases-DD/IDcase30
2 yrs.
M
Learning disability (developmental delay/intellectual disability)
Immune deficiency
644569
1164081
519513
GRCh38
Duplication
Yes
rosenfeld_10_ASD_discovery_cases-case13744
NA
NA
ASD
NA
NA
262578
967557
704979
Unknown
Duplication
Yes
rosenfeld_10_ASD_discovery_cases-case3084
NA
NA
ASD
NA
NA
262578
967557
704979
Unknown
Duplication
Yes
stobbe_13_ASD_discovery_cases-case22
27 yrs.
M
Autism, ID, and epilepsy
Family history: 1 sister with dyslexia. Karyotype: not performed. Fragile X testing: normal.
Intellectual disability
1606668
1949148
342481
GRCh38
Duplication
No
tropeano_16_ASD/NDD_replication_cases-case10
< 2 years
M
Structural brain abnormalities
Partial corpus callosum and septum pellucidum agenesis; very thin corpus callosum posteriorly, possibly affecting ventricular shape, Bilateral fixed talipes
169063/119063
618036/568036
448974
GRCh37
Duplication
Yes
tropeano_16_ASD/NDD_replication_cases-case16
10- 16 years
M
Developmental delay and epilepsy
Macrocephaly, developmental delay, Epilepsy, physical dysmorphism
209659/159659
664616/614616
454958
GRCh37
Duplication
Yes
tropeano_16_ASD/NDD_replication_cases-case17
4- 10 years
M
ASD and intellectual disability
Tall stature, feeding difficulties, increased appetite, delayed (atypical) cognitive development, delayed motor development, Speech & language development disorder, Autism spectrum disorder, Slightly lower muscle tone, Joint hypermobility, Aggression, Obssessions with visiting toilet. Family history: father has behavioral problems.
delayed (atypical) cognitive development
219608/169608
1019080/969080
799473
GRCh37
Duplication
Yes
tropeano_16_ASD/NDD_replication_cases-case18
44- 50 years
M
Epilepsy
Epilepsy (absences from 11, generalized tonic)
286523/236523
618036/568036
331514
GRCh37
Duplication
Yes
tropeano_16_ASD/NDD_replication_cases-case20
< 4 years
M
Developmental delay
Developmental delay, Hypotonia
286524/236524
664616/614616
378093
GRCh37
Duplication
Yes
tropeano_16_ASD/NDD_replication_cases-case22
4- 10 years
M
ASD and developmental delay
Developmental delay, PDD-NOS. Family history: Father has OCD (not available for testing), mother had school problems (not available for testing), Family history of language problems.
296482/246482
624771/574771
328289
GRCh37
Duplication
Yes
tropeano_16_ASD/NDD_replication_cases-case26
< 4 years
M
Developmental delay
Developmental delay, Learning disability
Learning disability
330876/280876
851864/801864
520988
GRCh37
Duplication
Yes
tropeano_16_ASD/NDD_replication_cases-case28
< 4 years
M
ASD and intellectual disability
Overweight, moderate cognitive delay (IQ 35-49), Speech & language development disorder, Learning difficulties, Autism spectrum disorder, Vision impairment (Squint)
Moderate cognitive delay (IQ 35-49)
342016/292016
774548/724548
432533
GRCh37
Duplication
Yes
tropeano_16_ASD/NDD_replication_cases-case3
10-16 years
M
ADHD and developmental delay
Developmental delay (problems reported at 5 years, none prior), learning difficulties, ADHD, short attention span, poor concentration. Family history: father had developmental delay and ADHD as a child (not available for testing), Brother (different father) has Aspergers syndrome, cousin (maternal) is dyslexic.
Learning difficulties
61528/11528
774548/724548
713021
GRCh37
Duplication
Yes
tropeano_16_ASD/NDD_replication_cases-case33
4- 10 years
M
Developmental delay
Developmental delay
352512/302512
596131/546131
243619
GRCh37
Duplication
Yes
tropeano_16_ASD/NDD_replication_cases-case37
4- 10 years
M
Developmental delay and ADHD
Developmental delay, Langauge delay, learning disability, ADHD, congenital deafness
Learning disability
352512/302512
596131/546131
243619
GRCh37
Duplication
Yes
tropeano_16_ASD/NDD_replication_cases-case38
10- 16 years
M
ASD and developmental delay
Developmental delay, ASD
352512/302512
596131/546131
243619
GRCh37
Duplication
Yes
tropeano_16_ASD/NDD_replication_cases-case4
4-10 years
M
Developmental delay
Developmental delay, learning difficulties, behavioral problems
Learning difficulties
154061/104061
658258/608258
504198
GRCh37
Duplication
Yes
tropeano_16_ASD/NDD_replication_cases-case41
< 3 years
M
Developmental delay
Developmental delay, Obstructive hydrocephalus
380444/330444
598916/548916
218472
GRCh37
Duplication
Yes
tropeano_16_ASD/NDD_replication_cases-case45
4- 10 years
M
Developmental delay
Developmental delay
416383/366383
787363/737363
370980
GRCh37
Duplication
Yes
tropeano_16_ASD/NDD_replication_cases-case5
4-10 years
M
ASD
Autism, acute language regression
154061/104061
664616/614616
510556
GRCh37
Duplication
Yes
tropeano_16_ASD/NDD_replication_cases-case52
14- 20 years
M
Motor and speech delay
Delayed motor development (walked at 2 years), speech delay, vision impairment, Hypertelorism, Facial asymmetry, Hemifacial microsomia, Hypoplasia left mandible, Dysplastic left ear, Clinodactyly, other skeletal abnormalities (e.g. scoliosis)
481939/431939
618036/568036
136098
GRCh37
Duplication
Yes
tropeano_16_ASD/NDD_replication_cases-case53
4- 10 years
M
Developmental delay and epilepsy
Global developmental delay, epilepsy, obstructive sleep apnea
481939/431939
618036/568036
136098
GRCh37
Duplication
Yes
tropeano_16_ASD/NDD_replication_cases-case55
< 4 years
M
ASD
Autism spectrum disorder
481939/431939
664616/614616
182678
GRCh37
Duplication
Yes
tropeano_16_ASD/NDD_replication_cases-case57
4- 10 years
F
Motor difficulties
Poor coordination, difficulties with fine motor movements, autistic traits, sleep problems, Upslanted palpebral fissures, Narrow short nose, Thin lips. Family history: Father had behavioural problems as a child and history of violence as a teenager and becomes stressed at work in new situations; Brother has ASD; Paternal brother has dyslexia and his son has ASD/ADHD.
521204
858508
337305
GRCh38
Duplication
Yes
tropeano_16_ASD/NDD_replication_cases-case59
< 3 years
M
Speech and language delay
Speech & language development disorder
481939/431939
998152/948152
516214
GRCh37
Duplication
Yes
tropeano_16_ASD/NDD_replication_cases-case62
4- 10 years
M
Developmental delay
Developmental delay, speech delay, learning difficulties
Learning difficulties
517113/467113
697271/647271
180159
GRCh37
Duplication
Yes
tropeano_16_ASD/NDD_replication_cases-case63
10- 16 years
M
ASD
Autism, behavioral problems, Scholastic difficulties
517113/467113
742860/692860
225748
GRCh37
Duplication
Yes
tropeano_16_ASD/NDD_replication_cases-case66
< 4 years
M
ASD and developmental delay
Developmental delay, language delay, ASD
539198/489198
877796/827796
338598
GRCh37
Duplication
Yes
tropeano_16_ASD/NDD_replication_cases-case68
4- 10 years
M
Developmental delay
Short stature, developmental delay, speech and language delay. Family history: Father attended a special school, current alcohol/drug abuse (not available for testing); Grandfather (paternal) had dyslexia; Grandmother (maternal) has severe depression.
550457/500457
618036/568036
67580
GRCh37
Duplication
Yes
tropeano_16_ASD/NDD_replication_cases-case69
< 4 years
M
ASD, developmental delay and intellectual disability
Moderate cognitive delay (IQ 35-49; for adults mental age 6-9 yrs), global developmental delay, skin tags.
Moderate cognitive delay (IQ 35-49; for adults mental age 6-9 yrs)
550457/500457
620326/570326
69870
GRCh37
Duplication
Yes
tropeano_16_ASD/NDD_replication_cases-case70
14- 20 years
M
Developmental delay and epilepsy
Severe developmental delay, Speech and language delay and disfluency, Severe epilepsy, Bifid uvula (yet difficult to assess), Splint on left foot. Family history: Female twin has language delay; Eldest brother has Asperger's.
550457/500457
970747/920747
420291
GRCh37
Duplication
Yes
tropeano_16_ASD/NDD_replication_cases-case71
4- 10 years
M
ASD, ADHD, and developmental delay
Developmental delay, Learning disability, ASD, ADHD
Learning disability
556108/506108
623246/573246
67138
GRCh37
Duplication
Yes
tropeano_16_ASD/NDD_replication_cases-case75
< 2 year
M
Hearing impairment
Unilateral sensorineural hearing loss, Hypoxic-ischaemic encephalopathy at birth
584507/534507
920279/870279
335773
GRCh37
Duplication
Yes
tropeano_16_ASD/NDD_replication_cases-case78
< 2 year
M
Developmental delay
Developmental delay, autistic traits, social communication and interaction problems, Wide epicanthal folds. Family history: Mother has family history of mental health problems; Maternal uncle has ADHD, cousin has autism, dyslexia, ADHD and Tourette syndrome.
590938/540938
1259140/1209140
668203
GRCh37
Duplication
Yes
tropeano_16_ASD/NDD_replication_cases-case81
4- 10 years
M
Developmental delay and ADHD
Developmental delay, Tall stature, Weight for age is >97th percentile, learning disability, ADHD
Learning disability
605689/555689
1232802/1182802
627113
GRCh37
Duplication
Yes
tropeano_16_ASD/NDD_replication_cases-case82
< 3 years
M
Developmental delay
Developmental delay
605689/555689
1232802/1182802
627113
GRCh37
Duplication
Yes
tropeano_16_ASD/NDD_replication_cases-case83
14- 20 years
M
Developmental delay
Developmental delay, speech articulation problems, Obesity (morbid), mild facial dysmorphology, multiple congenital anomalies.
605689/555689
1232802/1182802
627113
GRCh37
Duplication
Yes
tropeano_16_ASD/NDD_replication_cases-case84
4- 10 years
M
ASD
Asperger's syndrome, aggressive behavior started at 18 months, joint laxity in hands. Family history: Father has temper control issues (not available for testing),
607140/557140
1259140/1209140
652001
GRCh37
Duplication
Yes
tropeano_16_ASD/NDD_replication_cases-case85
4- 10 years
M
ASD, ADHD, and developmental delay
Developmental delay, Asperger's syndrome, ADHD. Family history: Father has ADHD and history of violence; Paternal half-sister has language delay; Grandmother (paternal) had fibromyalgia.
607140/557140
1259140/1209140
652001
GRCh37
Duplication
Yes
tropeano_16_ASD/NDD_replication_cases-case9
< 3 years
M
ASD and developmental delay
Developmental delay, ASD
162379/112379
598916/548916
436537
GRCh37
Duplication
Yes
tropeano_16_ASD/NDD_replication_cases-case90
4- 10 years
M
ASD and developmental delay
Borderline short stature (3rd - 5th centile), very premature birth, Delayed cognitive development, Gross motor delay, Fine motor delay, Speech delay, made good progress at school, Autism spectrum disorder, Vision impairment (left convergent squint), Ventricular haemorrhage in neonatal period, Reduced movement right side, Facial dysmorphism, including hypertelorism, Round eyes wide set, Broad nasal bridge, Long tapering fingers. Family history: Mother has schizophrenia, epilepsy, social communication difficulties and addictive behavior (not available for testing).
Delayed cognitive development
611307/561307
1019080/969080
407774
GRCh37
Duplication
Yes
tropeano_16_ASD/NDD_replication_cases-case91
< 3 years
M
Developmental delay
Developmental delay, Speech & language development disorder, Cerebral palsy unilateral, Abnormal tone and involuntary movements
611307/561307
1019080/969080
407774
GRCh37
Duplication
Yes
tropeano_16_ASD/NDD_replication_cases-case92
14- 20 years
M
Developmental delay
Developmental delay, recurrent infections
Developmental delay
61090/11090
774548/724548
713459
GRCh37
Deletion
No
tropeano_16_ASD/NDD_replication_cases-case96
10- 16 years
M
ASD and developmental delay
Developmental delay, ASD
Developmental delay
492059/442059
1019941/969941
527882
GRCh37
Deletion
No
tropeano_16_ASD/NDD_replication_cases-case98
14- 20 years
M
Developmental delay and intellectual disability
Developmental delay, cognitive impairment, short stature
Developmental delay, cognitive impairment
519455/469455
592812/542812
73357
GRCh37
Deletion
No
tropeano_16_ASD_discovery_cases-MAAS20
20-29 yrs.
M
ASD
Case diagnosed with autism based on ICD-10 research criteria; diagnosis confirmed using ADOS and ADI-R. Number of additional co-morbid mental health conditions (diagnosed in accordance with ICD-10R or DSM-IV) at time of initital assessment: 1.
1378591/1328591
1467436/1417436
88845
GRCh37
Duplication
Yes
Controls
Patient ID
Author, Year
Age
Gender
Primary Diagnosis
Clinical Profile
Cognitive Profile
CNV Start
CNV End
CNV Size
Genome Build
Type Method
Validation
tropeano_16_ASD/NDD_replication_controls-control11
N/A
M
Control
Control cohort: Population Diagnostics (PDx)
441610/391610
723851/673851
282241
GRCh37
Duplication
No
tropeano_16_ASD/NDD_replication_controls-control13
N/A
M
Control
Control cohort: Starr County Diabetes study
468364/418364
770203/720203
301839
GRCh37
Duplication
No
tropeano_16_ASD/NDD_replication_controls-control14
N/A
M
Control
Control cohort: Geneva NHS/HPFS Diabetes study
468364/418364
1226875/1176875
758511
GRCh37
Duplication
No
tropeano_16_ASD/NDD_replication_controls-control2
N/A
M
Control
Control cohort: Geneva NHS/HPFS Diabetes study
297021/247021
650983/600983
353962
GRCh37
Duplication
No
tropeano_16_ASD/NDD_replication_controls-control29
N/A
M
Control
Control cohort: HapMap (Phase 3) controls
492076/442076
647550/597550
155474
GRCh37
Deletion
No
tropeano_16_ASD/NDD_replication_controls-control3
N/A
M
Control
Control cohort: POPGEN
297021/247021
663279/613279
366258
GRCh37
Duplication
No
tropeano_16_ASD/NDD_replication_controls-control30
N/A
M
Control
Control cohort: Ottawa Heart Institute controls
582185/532185
643885/593885
61700
GRCh37
Deletion
No
tropeano_16_ASD/NDD_replication_controls-control4
N/A
M
Control
Control cohort: Geneva NHS/HPFS Diabetes study
297021/247021
665405/615405
368384
GRCh37
Duplication
No
tropeano_16_ASD/NDD_replication_controls-control5
N/A
M
Control
Control cohort: POPGEN
297021/247021
770203/720203
473182
GRCh37
Duplication
No
tropeano_16_ASD/NDD_replication_controls-control6
N/A
M
Control
Control cohort: Ontario Population Genomics Platform (OPGP)
309434/259434
636365/586365
326931
GRCh37
Duplication
No
tropeano_16_ASD/NDD_replication_controls-control9
N/A
M
Control
Control cohort: Geneva NHS/HPFS Diabetes study
353979/303979
1008051/958051
654072
GRCh37
Duplication
No
Cases
Patient ID
Validation Description
Primary Disorder Inheritence
Inheritence
Family Profile
Disease Segregation
Gene Content
Altered Gene Expression
napoli_17_ASD_discovery_cases-case15
RT-PCR
Unknown
DHRSX
roberts_13_ASD/DD/ID_discovery_cases-DD/IDcase30
BACs aCGH or FISH
Paternal
Unknown
Unknown
RPL14P5,SHOX
rosenfeld_10_ASD_discovery_cases-case13744
FISH
Unknown
Unknown
Unknown
PPP2R3B,SHOX
rosenfeld_10_ASD_discovery_cases-case3084
FISH
Unknown
Unknown
Unknown
PPP2R3B,SHOX
stobbe_13_ASD_discovery_cases-case22
Unknown
Multiplex
Unknown
ASMT
tropeano_16_ASD/NDD_replication_cases-case10
aCGH
Unknown
Unknown
Unknown
SHOX (exons 1, 2, 2a, 3, 4, 5, 6a, 7-1, 7-2, 7-3), PLCXD1, GTPBP6, PPP2R3B
tropeano_16_ASD/NDD_replication_cases-case16
aCGH
Paternal
Unknown
Unknown
SHOX (exons 1, 2, 2a, 3, 4, 5, 6a, 7-1, 7-2, 7-3), PLCXD1 (Exons 7-9), GTPBP6, PPP2R3B
tropeano_16_ASD/NDD_replication_cases-case17
aCGH
Possibly paternal
Paternal
Multi-generational
Possibly segregated
SHOX (exons 1, 2, 2a, 3, 4, 5, 6a, 7-1, 7-2, 7-3, 6b), PLCXD1 (Exons 9), GTPBP6, PPP2R3B
tropeano_16_ASD/NDD_replication_cases-case18
aCGH
Unknown
Unknown
Unknown
SHOX (exons 1, 2, 2a, 3, 4, 5, 6a, 7-1, 7-2, 7-3), PPP2R3B
tropeano_16_ASD/NDD_replication_cases-case20
aCGH
Unknown
Unknown
Unknown
SHOX (exons 1, 2, 2a, 3, 4, 5, 6a, 7-1, 7-2, 7-3, 6b), PPP2R3B
tropeano_16_ASD/NDD_replication_cases-case22
aCGH
Possibly both parents
Unknown
Multi-generational
Unknown
SHOX (exons 1, 2, 2a, 3, 4, 5, 6a, 7-1, 7-2, 7-3, 6b), PPP2R3B (Exon 1-12)
tropeano_16_ASD/NDD_replication_cases-case26
aCGH
Unknown
Unknown
Unknown
SHOX (exons 1, 2, 2a, 3, 4, 5, 6a, 7-1, 7-2, 7-3, 6b), PPP2R3B (Exon 1)
tropeano_16_ASD/NDD_replication_cases-case28
aCGH
Unknown
Unknown
Unknown
SHOX (exons 1, 2, 2a, 3, 4, 5, 6a, 7-1, 7-2, 7-3, 6b), PPP2R3B (Exon 1)
tropeano_16_ASD/NDD_replication_cases-case3
aCGH
Possibly paternal
Unknown
Multi-generational
Unknown
SHOX (exons 1, 2, 2a, 3, 4, 5, 6a, 7-1, 7-2, 7-3, 6b), PLCXD1, GTPBP6, PPP2R3B
tropeano_16_ASD/NDD_replication_cases-case33
aCGH
Unknown
Unknown
Unknown
SHOX (exons 1, 2, 2a, 3)
tropeano_16_ASD/NDD_replication_cases-case37
aCGH
Unknown
Unknown
Unknown
SHOX (exons 1, 2, 2a, 3)
tropeano_16_ASD/NDD_replication_cases-case38
aCGH
Unknown
Unknown
Unknown
SHOX (exons 1, 2, 2a, 3)
tropeano_16_ASD/NDD_replication_cases-case4
aCGH
Unknown
Unknown
Unknown
SHOX (exons 1, 2, 2a, 3, 4, 5, 6a, 7-1, 7-2, 7-3, 6b), PLCXD1, GTPBP6, PPP2R3B
tropeano_16_ASD/NDD_replication_cases-case41
aCGH
Unknown
Unknown
Unknown
SHOX (exons 1, 2, 2a, 3)
tropeano_16_ASD/NDD_replication_cases-case45
aCGH
Unknown
Unknown
Unknown
SHOX (exons 1, 2, 2a, 3, 4, 5, 6a, 7-1, 7-2, 7-3, 6b)
tropeano_16_ASD/NDD_replication_cases-case5
aCGH
Paternal
Unknown
Unknown
SHOX (exons 1, 2, 2a, 3, 4, 5, 6a, 7-1, 7-2, 7-3, 6b), PLCXD1, GTPBP6, PPP2R3B
tropeano_16_ASD/NDD_replication_cases-case52
aCGH
Unknown
Unknown
Unknown
SHOX (exons 1, 2, 2a, 3, 4, 5, 6a, 7-1, 7-2, 7-3)
tropeano_16_ASD/NDD_replication_cases-case53
aCGH
Paternal
Unknown
Unknown
SHOX (exons 1, 2, 2a, 3, 4, 5, 6a, 7-1, 7-2, 7-3)
tropeano_16_ASD/NDD_replication_cases-case55
aCGH
Paternal
Unknown
Unknown
SHOX (exons 1, 2, 2a, 3, 4, 5, 6a, 7-1, 7-2, 7-3, 6b)
tropeano_16_ASD/NDD_replication_cases-case57
aCGH
Possibly paternal
Paternal
Multi-generational
Possibly segregated
FABP5P13,KRT18P53,SHOX
tropeano_16_ASD/NDD_replication_cases-case59
aCGH
Paternal
Unknown
Unknown
SHOX (exons 1, 2, 2a, 3, 4, 5, 6a, 7-1, 7-2, 7-3, 6b)
tropeano_16_ASD/NDD_replication_cases-case62
aCGH
Unknown
Unknown
Unknown
SHOX (exons 1, 2, 2a, 3, 4, 5, 6a, 7-1, 7-2, 7-3, 6b)
tropeano_16_ASD/NDD_replication_cases-case63
aCGH
Unknown
Unknown
Unknown
SHOX (exons 1, 2, 2a, 3, 4, 5, 6a, 7-1, 7-2, 7-3, 6b)
tropeano_16_ASD/NDD_replication_cases-case66
aCGH
Unknown
Unknown
Unknown
SHOX (exons 1, 2, 2a, 3, 4, 5, 6a, 7-1, 7-2, 7-3, 6b)
tropeano_16_ASD/NDD_replication_cases-case68
aCGH
Unknown
Multi-generational
Unknown
SHOX (exons 1, 2, 2a, 3, 4, 5, 6a, 7-1, 7-2, 7-3)
tropeano_16_ASD/NDD_replication_cases-case69
aCGH
Unknown
Unknown
Unknown
SHOX (exons 1, 2, 2a, 3, 4, 5, 6a, 7-1, 7-2, 7-3, 6b)
tropeano_16_ASD/NDD_replication_cases-case70
aCGH
Unknown (not maternal)
Multiplex
Unknown
SHOX (exons 1, 2, 2a, 3, 4, 5, 6a, 7-1, 7-2, 7-3, 6b)
tropeano_16_ASD/NDD_replication_cases-case71
aCGH
Unknown
Unknown
Unknown
SHOX (exons 1, 2, 2a, 3, 4, 5, 6a, 7-1, 7-2, 7-3, 6b)
tropeano_16_ASD/NDD_replication_cases-case75
aCGH
Unknown
Unknown
Unknown
SHOX (exons 1, 2, 2a, 3, 4, 5, 6a, 7-1, 7-2, 7-3, 6b )
tropeano_16_ASD/NDD_replication_cases-case78
aCGH
Unknown
Multi-generational
Unknown
SHOX (exons 2, 2a, 3, 4, 5, 6a, 7-1, 7-2, 7-3, 6b)
tropeano_16_ASD/NDD_replication_cases-case81
aCGH
Unknown
Unknown
Unknown
SHOX (exons 7-1, 7-2, 7-3, 6b)
tropeano_16_ASD/NDD_replication_cases-case82
aCGH
Unknown
Unknown
Unknown
SHOX (exons 7-1, 7-2, 7-3, 6b)
tropeano_16_ASD/NDD_replication_cases-case83
aCGH
Unknown
Unknown
Unknown
SHOX (exons 7-1, 7-2, 7-3, 6b)
tropeano_16_ASD/NDD_replication_cases-case84
aCGH
Unknown (not maternal)
Unknown
Unknown
SHOX (exons 7-1, 7-2, 7-3, 6b)
tropeano_16_ASD/NDD_replication_cases-case85
aCGH
Possibly paternal
Paternal
Multi-generational
Possibly segregated
SHOX (exons 7-1, 7-2, 7-3, 6b)
tropeano_16_ASD/NDD_replication_cases-case9
aCGH
Unknown
Unknown
Unknown
SHOX (exons 1, 2, 2a, 3), PLCXD1, GTPBP6, PPP2R3B
tropeano_16_ASD/NDD_replication_cases-case90
aCGH
Possibly maternal
Unknown
Multi-generational
Unknown
SHOX (exons 7-1, 7-2, 7-3, 6b)
tropeano_16_ASD/NDD_replication_cases-case91
aCGH
Unknown
Unknown
Unknown
SHOX (exons 7-1, 7-2, 7-3, 6b)
tropeano_16_ASD/NDD_replication_cases-case92
Unknown
Unknown
Unknown
SHOX (exons 1, 2, 2a, 3, 4, 5, 6a, 7-1, 7-2, 7-3, 6b), PLCXD1, GTPBP6, PPP2R3B
tropeano_16_ASD/NDD_replication_cases-case96
Unknown
Unknown
Unknown
SHOX (exons 1, 2, 2a, 3, 4, 5, 6a, 7-1, 7-2, 7-3, 6b)
tropeano_16_ASD/NDD_replication_cases-case98
Unknown
Unknown
Unknown
SHOX (exons 1, 2, 2a)
tropeano_16_ASD_discovery_cases-MAAS20
MLPA or aCGH
Unknown
Unknown
Unknown
CSF2RA,IL3RA
Controls
Patient ID
Validation Description
Primary Disorder Inheritence
Inheritence
Family Profile
Disease Segregation
Gene Content
Altered Gene Expression
tropeano_16_ASD/NDD_replication_controls-control11
Unknown
SHOX
tropeano_16_ASD/NDD_replication_controls-control13
Unknown
SHOX
tropeano_16_ASD/NDD_replication_controls-control14
Unknown
SHOX
tropeano_16_ASD/NDD_replication_controls-control2
Unknown
SHOX, PPP2R3B (exons 1-12)
tropeano_16_ASD/NDD_replication_controls-control29
Unknown
SHOX
tropeano_16_ASD/NDD_replication_controls-control3
Unknown
SHOX, PPP2R3B (exons 1-12)
tropeano_16_ASD/NDD_replication_controls-control30
Unknown
SHOX
tropeano_16_ASD/NDD_replication_controls-control4
Unknown
SHOX, PPP2R3B (exons 1-12)
tropeano_16_ASD/NDD_replication_controls-control5
Unknown
SHOX, PPP2R3B (exons 1-12)
tropeano_16_ASD/NDD_replication_controls-control6
Unknown
SHOX, PPP2R3B (exons 1-2)
tropeano_16_ASD/NDD_replication_controls-control9
Unknown
SHOX
No Animal Model Data Available


