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9q34.11-q34.12CNV Type: Deletion


Largest CNV size: 2349000 bp

Statistics Box:
Number of Reports: 1



Summary Information

Summary statement in development

Additional Locus Information

Genome browsers

USCS Symbol             NCBI Symbol

Decipher

            Decipher Symbol

References

Major Reports

Title
Author, Year
Report Class
CNV Type
Novel 9q34.11 gene deletions encompassing combinations of four Mendelian disease genes: STXBP1, SPTAN1, ENG, and TOR1A.
Deletion

Minor Reports

Title
Author, Year
Report Class
CNV Type

No Minor Reports

Cases

Cohort ID
Author, Year
Descripton
Cohort Size
Diagnosis
Age
Gender
CNV Size
Deletion
Duplication
Total CNV's
 campbell_12_ASD/EP/ID_discovery_cases
 Unrelated children with variable clinical phenotypes found to have a 9q34.11 deletion as determined by aCGH.
 10
 All cases with intellectual disability (ranging from mild to profound), hypotonia, and speech impairment. 4 cases with epilepsy, 2 cases with ASD.
 Range, 2-15 yrs.
 60% Male
 2349000
 1
 0
 1

Controls

No Control Data Available

Cases

Cohort ID
Geographical Ancestry
Discovery Method
Platform
Algorithm
Software
Validation Method
 campbell_12_ASD/EP/ID_discovery_cases
  NA
 aCGH
  Agilent custom 9q34 60K arrays
 
 Agilent Genomic Workbench, R Statistical Computing Package
 FISH

Controls

No Control Data Available

Cases

Patient ID
Author, Year
Age
Gender
Primary Diagnosis
Clinical Profile
Cognitive Profile
CNV Start
CNV End
CNV Size
Genome Build
Type Method
Validation
  campbell_12_ASD/EP/ID_discovery_cases-case8
 15 yrs.
 M
 Intellectual disability
 Age at onset of epilepsy: NA. Epilepsy type: none. EEG: NA. MRI/CT: dysplastic corpus callosum and small pituitary. Neurological examination: hypotonia, dystonia. Ophthalmological abnormalities: none. Psychomotor regression: none. Speech impairment: mild. Other manifestations: mild dysmorphic features.
 Moderate intellectual disability
 128710419
 131100279
  2389861
 GRCh38
 Deletion
 Yes

Controls

No Control Data Available

Cases

Patient ID
Validation Description
Primary Disorder Inheritence
Inheritence
Family Profile
Disease Segregation
Gene Content
Altered Gene Expression
 campbell_12_ASD/EP/ID_discovery_cases-case8
 FISH
 
 Unknown
 Unknown
 Unknown
 ZDHHC12,ENDOG,DOLK,IER5L,C9orf106,RN7SL159P,ASB6,PRRX2-AS1,UBE2V1P4,TOR1A,C9orf78,MIR6855,RN7SL665P,MIR6856,QRFP,ZER1,TBC1D13,SPOUT1,LRRC8A,PHYHD1,SH3GLB2,MIGA2,DOLPP1,PTPA,LINC01503,C9orf50,PRRX2,PTGES,TOR1B,USP20,GPR107,NCS1,ASS1,FUBP3,EXOSC2,FIBCD1,AIF1L,PKN3,KYAT1,CRAT,LINC00963,NTMT1,HMCN2,PRDM12,ABL1,NUP188,FNBP1,LAMC3
 

Controls

No Control Data Available
No Animal Model Data Available
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