9p11.2-q12CNV Type: Deletion
Largest CNV size: 19900000 bp
Statistics Box:
Number of Reports: 1
Number of Reports: 1
Summary Information
A deletion of unknown origin was identified within this region in an Austrian ASD case (Egger et al., 2014).
Additional Locus Information
References
Major Reports
Title
Author, Year
Report Class
CNV Type
No Major Reports
Minor Reports
Title
Author, Year
Report Class
CNV Type
Identification of risk genes for autism spectrum disorder through copy number variation analysis in Austrian families.
Deletion
Cases
Cohort ID
Author, Year
Descripton
Cohort Size
Diagnosis
Age
Gender
CNV Size
Deletion
Duplication
Total CNV's
egger_14_ASD_discovery_cases
ASD probands from Austria (71 simplex, 2 multiplex) recruited from the catchment area of Styria using three recruitment sites (Institute of Human Genetics, Medical University of Graz, Club Libelle, Center for Autism, Styria, and Children's Hospital, University Hospital Graz).
73
Diagnosis of ASD made using ADOS and ADI-R according to DSM-IV or DSM-V categories
N/A
80.82% Male
19900000
1
0
1
Controls
Cohort ID
Author, Year
Descripton
Cohort Size
Diagnosis
Age
Gender
CNV Size
Deletion
Duplication
Total CNV's
egger_14_ASD_discovery_controls
CNV data from POPGEN (n=1,123) and the Ottawa Heart Institute (n=1,234)
2357
Control
N/A
N/A
0
0
0
0
Cases
Cohort ID
Geographical Ancestry
Discovery Method
Platform
Algorithm
Software
Validation Method
egger_14_ASD_discovery_cases
68 European, 2 Asian, 1 African, 1 Turkish, 1 Egyptian
Array SNP
Affymetrix 6.0
Birdsuite, iPattern, Affymetrix Genotyping Console
None
Controls
Cohort ID
Geographical Ancestry
Discovery Method
Platform
Algorithm
Software
Validation Method
egger_14_ASD_discovery_controls
European
N/A
N/A
Cases
Patient ID
Author, Year
Age
Gender
Primary Diagnosis
Clinical Profile
Cognitive Profile
CNV Start
CNV End
CNV Size
Genome Build
Type Method
Validation
egger_14_ASD_discovery_cases-caseA196
N/A
N/A
ASD
CNV: high stringency genic CNV call (2 or more algorithms), with no overlapping calls in 2,357 POPGEN and OHI controls, and <50% overlap in DGV.
41483021
65400093
23917073
GRCh38
Deletion
No
Controls
No Control Data Available
Cases
Patient ID
Validation Description
Primary Disorder Inheritence
Inheritence
Family Profile
Disease Segregation
Gene Content
Altered Gene Expression
egger_14_ASD_discovery_cases-caseA196
Unknown
Unknown
RN7SL565P,RBM17P3,RN7SL343P,FAM74A7,SDR42E1P2,ATP5F1AP1,RAB28P3,RBPJP6,FGF7P5,FGF7P4,ADGRF5P2,MEP1AP4,RNU6-599P,SNX18P5,CYP4F60P,CNN2P4,RN7SL462P,RN7SL722P,FAM27C,FAM242E,RN7SL544P,FGF7P7,CNTNAP3P5,RBPJP7,RAB28P2,ATP5F1AP7,SDR42E1P3,FKBP4P7,LINC01410,RNA5SP283,PTGER4P2,CDK2AP2P2,MYO5BP2,ADGRF5P1,FGF7P8,BMS1P9,MYO5BP3,CDK2AP2P3,PTGER4P3,RNA5SP284,DUX4L50,MIR4477B,RNU6-1193P,SNX18P9,CYP4F25P,CNN2P3,GXYLT1P6,BMS1P11,IGKV1OR-2,BNIP3P4,RNU6-1293P,IGKV1OR9-1,FOXD4L5,SPATA31A6,FKBP4P6,GXYLT1P5,SPATA31A5,FAM74A6,SPATA31A7,FAM242D,CNTNAP3P1,AQP7P4,AQP7P1,FRG1JP,ANKRD20A4,AQP7P2,BMS1P12,CBWD4P,FAM242F,ANKRD20A7P,FAM74A4,CNTNAP3C,FGF7P6,LINC01189,BMS1P10,CNTNAP3B
Controls
No Control Data Available
No Animal Model Data Available