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7p14.3CNV Type: Deletion-Duplication


Largest CNV size: 103626 bp

Statistics Box:
Number of Reports: 20



Summary Information

Summary statement in development

Additional Locus Information

Genome browsers

USCS Symbol             NCBI Symbol

Decipher

            Decipher Symbol

References

Major Reports

Title
Author, Year
Report Class
CNV Type
Autism genome-wide copy number variation reveals ubiquitin and neuronal genes.
Duplication
Functional impact of global rare copy number variation in autism spectrum disorders.
Duplication
An evidence-based approach to establish the functional and clinical significance of copy number variants in intellectual and developmental disabili...
Duplication
Sporadic autism exomes reveal a highly interconnected protein network of de novo mutations.
Duplication
Excess of rare, inherited truncating mutations in autism.
Duplication
Microduplications at the pseudoautosomal SHOX locus in autism spectrum disorders and related neurodevelopmental conditions.
Deletion
NA
Duplication

Minor Reports

Title
Author, Year
Report Class
CNV Type
Rare structural variation of synapse and neurotransmission genes in autism.
Duplication
Reduced transcript expression of genes affected by inherited and de novo CNVs in autism.
Duplication
Multiple recurrent de novo CNVs, including duplications of the 7q11.23 Williams syndrome region, are strongly associated with autism.
Deletion-Duplication
A discovery resource of rare copy number variations in individuals with autism spectrum disorder.
Deletion
Transmission disequilibrium of small CNVs in simplex autism.
Duplication
Identification of small exonic CNV from whole-exome sequence data and application to autism spectrum disorder.
Duplication
Both rare and de novo copy number variants are prevalent in agenesis of the corpus callosum but not in cerebellar hypoplasia or polymicrogyria.
Duplication
Copy number variation in Han Chinese individuals with autism spectrum disorder.
Duplication
Performance of case-control rare copy number variation annotation in classification of autism.
Duplication
The Role of mGluR Copy Number Variation in Genetic and Environmental Forms of Syndromic Autism Spectrum Disorder.
Duplication
Genome-wide analysis of copy number variations identifies PARK2 as a candidate gene for autism spectrum disorder.
Deletion
NA
Duplication
NA
Duplication

Cases

Cohort ID
Author, Year
Descripton
Cohort Size
Diagnosis
Age
Gender
CNV Size
Deletion
Duplication
Total CNV's
 bitar_19_ASD_discovery_cases
  NA NA
 ASD cases selected through specialized institutions and NGOs specializing in mental disorders throughout Lebanon
 19
 Cases diagnosed with ASD using DSM-IV criteria and CARS
 N/A
 84.21% Male
 276000
 0
 1
 1
 digregorio_17_DD/ID_discovery_cases
  NA NA
 Consecutive cases examined in the Medical Genetics Unit at the "Citta della Salte e della Scienza" University Hospital (Turin, Italy) from 2008 to 2014 (cases with CNVs are present in DECIPHER database)
 1015
 Cases diagnosed with idiopathic developmental delay and/or intellectual disability (DD/ID)
 N/A
 N/A
 288000
 0
 1
 1
 engchuan_15_ASD_discovery_cases
 Samples from the Autism Genome Project (AGP)
 1892
 Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
 N/A
 85.78% Male
 59740
 0
 7
 7
 gai_11_ASD_discovery_cases
 Discovery case samples derived from AGRE set 4 (most recent patient recruitment)
 631
 Idiopathic autism; cases designated as 'spectrum' and 'not quite autism' excluded, as were cases with known genetic syndromes or other non-idiopathic causes
 
 
 214173
 0
 2
 2
 gazzellone_14_ASD_discovery_cases
 ASD-affected individuals referred to the Children Development and Behavior Research Center (CDRBC) at Harbin Medical University, China, between January 2007 and June 2011.
 104
 Diagnosis of ASD made using Autism Behavior Checklist (ABC) and Childhood Autism Rating Scale (CARS)
 Mean age at enrollment, 4.31 1.80 yrs.
 87.5% Male
 239984
 0
 1
 1
 glessner_09_ASD_discovery_cases
 Autism Case-Control (ACC) case cohort: 54% from simplex families, 46% from multiplex families
 859
 859 autism (ADI). 708 autism, 124 ASD, 27 not autism (based on ADOS)
 Range, 2-21
 81.8% Male
 103626
 0
 4
 4
 glessner_09_ASD_replication_cases
 Autism Genetic Resource Exchange (AGRE) case cohort: 5% from simplex families, 95% from multiplex families
 1336
 1202 autism, 134 ASD (AGRE status). 775 autism, 171 ASD, 76 not ASD or autism (based on ADOS)
 Mean, 9.2 5.3
 78.7% Male
 103626
 0
 0
 0
 kaminsky_11_DD/ID/ASD_discovery_cases
 Cases from the International Standards for Cytogenomic Arrays (ISCA) consortium
 15749
 Unexplained developmental delay, intellectual disability, dysmorphic features, multiple congenital anomalies, autism spectrum disorders, or clinical features suggestive of a chromosomal syndrome
 NA
 NA
 16864
 0
 1
 1
 krumm_13_ASD_discovery_cases
 Probands from quad families ascertained as part of the Simons Simplex Collection (SSC); CNVs detected using data from four previously published exome sequencing studies (O'Roak et al., 2011; Iossifov et al., 2012; O'Roak et al., 2012; Sanders et al., 2012)
 411
 Diagnosis of ASD. Social Responsiveness Scale (SRS) used as a quantitative measure of social deficits
 N/A
 81.265% Male
 83797
 0
 2
 2
 krumm_15_ASD_discovery_cases
 Probands from the Simons Simplex Collection
 2377
 Diagnosis of ASD
 N/A
 N/A
 301095
 0
 11
 11
 maini_18_ASD/DD/ID_discovery_cases
  NA NA
 Patients evaluated at the Clinical Genetics Unit of Arcispedale Santa Maria Nuova, AUSL-IRCCS of Reggio Emilia that were investigated through aCGH between 2005 and 2016
 293
 Cases presented with one or more neurodevelopmental disorders (NDD), multiple congenital anomalies (MCA), and/or dysmorphic features. Most frequent neurodevelopmental diagnoses include language delay (78.5%), intellectual disability (66.4%), motor delay (50.7%), and ASD (13.9%); dysmorphic features were also frequently observed (52.7%)
 Mean age, 7 yrs. (range, 1 mo.-29 yrs.)
 57.5% Male
 288000
 0
 1
 1
 nord_11_ASD_discovery_cases
 Youth with ASD (as part of mother-father-child trios)
 41
 ASD
 
 85.4% Male
 186757
 0
 2
 2
 o'roak_12_ASD_discovery_cases
 Autistic probands from the Simons Simplex Collection (SSC), from an initial cohort of 189 autism families
 122
 ASD/autism
 NA
 NA
 56451
 0
 1
 1
 pinto_10_ASD_discovery_cases
 Autism Genome Project (AGP) consortium patient cohort from families with at least two ASD individuals
 996
 ASD (ADI-R and ADOS): strict, broad, or spectrum ASD
 
 
 59741
 0
 3
 3
 poultney_13_ASD_discovery_cases
 ASD cases of European ancestry from AGRE retained after filtering (original cohort size of 432 cases)
 299
 Cases diagnosed with ASD
 N/A
 79.86% Male (before filtering)
 49098
 0
 3
 3
 prasad_12_ASD_discovery_cases
 Unrelated ASD cases recruited from three Canadian sites (Hospital for Sick Children, McMaster University, and Memorial University of Newfoundland); the majority of cases had been previously genotyped with results published in Marshall et al., 2008 and Pinto et al., 2010. 20 cases from initial cohort of 696 were excluded from further analysis (due to CNVs > 5 Mb).
 676
 Diagnosis of ASD based on meeting criteria on ADI-R and/or ADOS
 NA
 82.84% Male
 8009
 1
 0
 1
 sajan_13_ACC/CBLH/PMG_discovery_cases
 Individuals with severe congenital brain malformations [agenesis of the corpus callosum (ACC), cerebellar hypoplasia (CBLH), and/or polymicrogyria (PMG)] and additional neurodevelopmental phenotypes
 487
 Diagnosis of agenesis of the corpus callosum (ACC), cerebellar hypoplasia (CBLH), and/or polymicrogyria (PMG); additional diagnoses of autism spectrum disorder (ASD), developmental delay (DD), intellectual disability (ID) and/or seizures in some patients
 N/A
 N/A
 211967
 0
 2
 2
 sanders_11_ASD_discovery_cases
 Autistic probands from the Simons Simplex Collection (SSC). 872 probands in quartet families, 272 probands in trios.
 1124
 ASD diagnosis: 89.5% autism; 8.5% PDD-NOS, 2% Asperger syndrome. Mean full-scale IQ 85.1 1.5 (mean verbal IQ, 81.9 1.7; mean non-verbal IQ, 88.4 1.4)
 Mean, 9.1 yrs.
 86.1% Male
 59740
 5
 5
 10
 tropeano_16_ASD_discovery_cases
 ASD cases from the Maudsley Adult Autism clinic discovery series (Maudsley Hospital, London, United Kingdom)
 90
 Diagnosis of ASD according to ICD-10 and confirmed using ADOS and ADI-R.
 Adult age (20 yrs.+)
 N/A
 2481110
 1
 0
 1
 wenger_16_ASD_discovery_cases
 ASD cases with CNVs containing genes involved in the mGluR network from an initial cohort of 539 cases
 62
 ASD
 N/A
 N/A
 181533
 0
 1
 1
 yin_16_ASD_discovery_cases
 Discovery cohort of ASD cases recruited from the Department of Psychiatry of National Taiwan University Hospital (NTUH), Chang Gung Memorial Hospital (CGMH), Taoyuan, and Taoyuan Mental Hospital (TMH), Taiwan.
 335
 Cases diagnosed with autistic disorder according to DSM-IV and confirmed by using the Chinese version of ADI-R. Cases' autistic behaviors assessed by Social Responsiveness Scale (SRS), and cognitive functions assessed by the Weschler Intelligence Scale for Children-Third Edition (WISC-III) and the Wisconsin Card Sorting Test (WCST).
 Mean, 9.39 4.04 yrs.
 89.3% Male
 202389
 1
 0
 1

Controls

Cohort ID
Author, Year
Descripton
Cohort Size
Diagnosis
Age
Gender
CNV Size
Deletion
Duplication
Total CNV's
 engchuan_15_ASD_discovery_controls
 Platform-matched controls from three large studies: SAGE (Study of Addiction Genetics and Environment), Ontario Colorectal Cancer study, and HABC (Health Aging and Body Composition)
 2342
 Controls; subjects had no previous psychiatric history
 N/A
 46.67% Male
 219095
 1
 13
 14
 girirajan_13b_ASD_discovery_controls
 Controls ascertained from the Childhood Autism Risks from Genetics and Environment (CHARGE) study conducted through the Medical Investigation of Neurodevelopmental Disorders (MIND) Institute at UC-Davis after passing QC criteria (242 initial controls)
 223
 Control
 N/A
 N/A
 173376
 1
 1
 2
 glessner_09_ASD_discovery_controls
 Controls
 1409
 Controls
 
 
 103626
 0
 0
 0
 glessner_09_ASD_replication_controls
 Controls
 1110
 Controls
 
 
 103626
 0
 0
 0
 kaminsky_11_DD/ID/ASD_discovery_controls
 Controls from the International Standards for Cytogenomic Arrays (ISCA) consortium
 10118
 Controls
 NA
 NA
 NA
 NA
 NA
 NA
 krumm_13_ASD_discovery_controls
 Unaffected siblings of ASD probands from quad families ascertained as part of the Simons Simplex Collection (SSC); CNVs detected using data from four previously published exome sequencing studies (O'Roak et al., 2011; Iossifov et al., 2012; O'Roak et al., 2012; Sanders et al., 2012)
 411
 Control (unaffected siblings of ASD probands). Social Responsiveness Scale (SRS) used as a quantitative measure of social deficits
 N/A
 46.47% Male
 51131
 0
 1
 1
 krumm_15_ASD_discovery_controls
 Unaffected siblings from quad families from the Simons Simplex Collection
 1786
 Control
 N/A
 N/A
 119255
 1
 5
 6
 nord_11_ASD_discovery_controls
 Samples from 367 total control individuals (319 European American, 48 African American) used to test for differences in rare CNV prevalence compared with autism cases
 123
 Controls (no history of psychiatric symptoms by self-report)
 30 yrs.
 
 15043
 1
 0
 1
 poultney_13_ASD_discovery_controls
 Controls matched for European ancestry from NIMH and CEPH retained after filtering (original cohort size of 379 controls)
 260
 Control
 N/A
 47.49% Male (before filtering)
 548083
 1
 0
 1
 prasad_12_ASD_discovery_controls
 PDx controls [1000 DNA samples from reportedly healthy donors (50.2% male) from BioServe (Beltsville, MD)] and 4139 in-house controls previously reported in Krawcak et al. 2006, Stewart et al. 2009, and Bierut et al. 2010. CNVs identified in controls were used to define rare ASD-specific CNVs.
 5139
 Control
 NA
 NA (PDx controls 50.2% male)
 8009
 0
 0
 0
 sanders_11_ASD_discovery_controls
 Matched siblings of autistic probands from the Simons Simplex Collection (SSC).
 872
 Controls
 Mean, 10.0 yrs.
 
 214040
 8
 2
 10
 yin_16_ASD_discovery_controls
 Individuals from the Han Chinese Cell and Genome Bank (HCCGB) in Taiwan
 1093
 Controls
 Mean, 68.07 10.12 yrs.
 48.0% Male
 202389
 0
 0
 0

Cases

Cohort ID
Geographical Ancestry
Discovery Method
Platform
Algorithm
Software
Validation Method
 bitar_19_ASD_discovery_cases
  Lebanon
 aCGH
  Agilent SurePrint G3 2x400K
 ADM-2
 Agilent Cytogenomics v.3.0.6.6, Agilent Feature Extraction
 qPCR
 digregorio_17_DD/ID_discovery_cases
  Italian
 aCGH
  Agilent 60K (SurePrint G3 Human CGH Microarray 8x60K)
 ADM-2
 Agilent CGH Analytics software ver. 4.0.81
 None
 engchuan_15_ASD_discovery_cases
  Caucasian
 Solid phase hybridization
  Illumina 1M
 
 
 None
 gai_11_ASD_discovery_cases
  European
 Solid phase hybridization
  Illumina Infinium II HumanHap550 BeadChip
 
 BeadStudio 3.0
 None
 gazzellone_14_ASD_discovery_cases
  Han Chinese
 Array SNP
  Affymetrix CytoScan HD
 ChAS, iPattern, Nexus, Partek
 
 None
 glessner_09_ASD_discovery_cases
  European
 Solid phase hybridization
  HumanHap550 BeadChip
 PennCNV
 
 qPCR, MLPA, array SNP
 glessner_09_ASD_replication_cases
  European
 Solid phase hybridization
  HumanHap550 BeadChip
 PennCNV
 
 qPCR, MLPA, array SNP
 kaminsky_11_DD/ID/ASD_discovery_cases
  NA
 aCGH
  Agilent 44K, Agilent 105K
 
 Feature Extraction, DNA Analytics
 FISH, qPCR, MLPA, aCGH, standard G-banded chromosome analysis
 krumm_13_ASD_discovery_cases
  N/A
 WES
  Whole exome sequencing platforms used in four recent publications (O'Roak et al., 2011; Sanders et al., 2012; O'Roak et al., 2012, and Iossifov et al., 2012)
 DNACopy, CGHCall
 CoNIFER
 None
 krumm_15_ASD_discovery_cases
  N/A
 WES
 
 CoNIFER, XHMM
 
 Solid phase hybridization (Illumina 1M, 1 M Duo, or Omni 2.5)
 maini_18_ASD/DD/ID_discovery_cases
  Italian
 aCGH, array SNP
  Multiple platforms, including Agilent and Affymetrix arrays (8x60K oligochips since 2012)
 
 
 None
 nord_11_ASD_discovery_cases
  29 European American, 3 Asian American, 2 Hispanic, 2 African American, 5 unknown ancestry
 aCGH
  NimbleGen HD2
 Sliding-window algorithm, ~10 kb minumum size threshold
 
 None
 o'roak_12_ASD_discovery_cases
  NA
 WES
  NimbleGen EZ Exome V2.0, Illumina GAIIx or HiSeq2000
 HMM
 mrsFAST aligner
 aCGH, Sanger sequencing
 pinto_10_ASD_discovery_cases
  European
 Solid phase hybridization
  Illumina Infinium 1M SNP microarray
 QuantiSNP, iPattern
 
 qPCR, long-range PCR (LR-PCR), MLPA, FISH, aCGH (Agilent 1M), array SNP (Affymetrix 500K)
 poultney_13_ASD_discovery_cases
  European
 WES
  Agilent SureSelect Human All Exon v.2
 XHMM
 
 None
 prasad_12_ASD_discovery_cases
  Canada
 aCGH
  Agilent 1M
 ADM-2, DNAcopy (R Bioconductor)
 DNA Analytics v4.0.85 (Agilent), DNAcopy
 None
 sajan_13_ACC/CBLH/PMG_discovery_cases
  81.31% Caucasian
 Solid phase hybridization
  Illumina InfiniumII HumanHap610
 PennCNV
 
 None (not tested or failure to confirm by qPCR)
 sanders_11_ASD_discovery_cases
  White non-Hispanic, 74.5%; mixed, 9.3%, Asian, 4.3%, White Hispanic, 4.0%, African-American, 3.8%; other, 4.2&
 Solid phase hybridization
  Illumina 1M v1, Illumina 1M v3
 PennCNV, QuantiSNP, GNOSIS
 
 
 tropeano_16_ASD_discovery_cases
  United Kingdom
 aCGH
  Agilent 60K
 ADM-2
 Agilent Feature Extraction, Agilent Genomic Workbench
 MLPA, aCGH
 wenger_16_ASD_discovery_cases
  N/A
 Solid phase hybridization
  Illumina HumanHap 550 or Illumina Human610-Quad v1.0
 PennCNV
 
 None
 yin_16_ASD_discovery_cases
  Han Chinese
 Array SNP
  Affymetrix 6.0
 
 Affymetrix Genotyping Console v.4.1
 None

Controls

Cohort ID
Geographical Ancestry
Discovery Method
Platform
Algorithm
Software
Validation Method
  engchuan_15_ASD_discovery_controls
  Caucasian
  Solid phase hybridization
  Illumina 1M
 
 
  None
  girirajan_13b_ASD_discovery_controls
  116 European, 70 Hispanic, 27 Mixed Race, 7 Asian, 3 African-American
  aCGH
  Roche NimbleGen custom targeted hotspot array comprised of 135,000 probes with higher density probe coverage in genomic hotspots (regions flanked by segmental duplications)
  DNA Copy Number v1.6
 
 
  glessner_09_ASD_discovery_controls
  Caucasian
  Solid phase hybridization
  HumanHap550 BeadChip
  PennCNV
 
 
  glessner_09_ASD_replication_controls
  Caucasian
  Solid phase hybridization
  HumanHap550 BeadChip
  PennCNV
 
 
  kaminsky_11_DD/ID/ASD_discovery_controls
  NA
  aCGH
  Agilent 44K, Agilent 105K
 
  Feature Extraction, DNA Analytics
 
  krumm_13_ASD_discovery_controls
  N/A
  WES
  Whole exome sequencing platforms used in four recent publications (O'Roak et al., 2011; Sanders et al., 2012; O'Roak et al., 2012, and Iossifov et al., 2012)
  DNACopy, CGHCall
  CoNIFER
  None
  krumm_15_ASD_discovery_controls
  N/A
  WES
 
  CoNIFER, XHMM
 
  Solid phase hybridization (Illumina 1M, 1 M Duo, or Omni 2.5)
  nord_11_ASD_discovery_controls
 
  aCGH
  NimbleGen HD2
  Sliding-window algorithm, ~10 kb minumum size threshold
 
  None
  poultney_13_ASD_discovery_controls
  European
  WES
  Agilent SureSelect Human All Exon v.2
  XHMM
 
  None
  prasad_12_ASD_discovery_controls
  NA
  aCGH
  Agilent 1M
  ADM-2, DNAcopy (R Bioconductor)
  DNA Analytics v4.0.85 (Agilent), DNAcopy
 
  sanders_11_ASD_discovery_controls
 
  Solid phase hybridization
  Illumina 1M v1 or Illumina 1M v3
  PennCNV, QuantiSNP, GNOSIS
 
 
  yin_16_ASD_discovery_controls
  Han Chinese
  Array SNP
  Affymetrix 6.0
 
  Affymetrix Genotyping Console v.4.1
  None

Cases

Patient ID
Author, Year
Age
Gender
Primary Diagnosis
Clinical Profile
Cognitive Profile
CNV Start
CNV End
CNV Size
Genome Build
Type Method
Validation
  bitar_19_ASD_discovery_cases-case114
  NA NA
 N/A
 M
 ASD
 Case diagnosed with ASD using DSM-IV criteria and CARS. Behavioral/psychiatric evaluation: depression, hyperactivity, fear, anxiety. Additional medical history: deafness. Family history: born to non-consanguineous parents; family history not available.
 
 32186907
 32462981
  276075
 GRCh38
 Duplication
 Yes
  digregorio_17_DD/ID_discovery_cases-DECIPHER_300210
  NA NA
 N/A
 F
 Developmental delay/intellectual disability
 
 
 29192372
 29480364
  287993
 GRCh38
 Duplication
 No
  engchuan_15_ASD_discovery_cases-case1116_4
 N/A
 N/A
 ASD
 Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
 
 33087927
 33147667
  59741
 GRCh38
 Duplication
 No
  engchuan_15_ASD_discovery_cases-case1240_3
 N/A
 N/A
 ASD
 Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
 
 33087927
 33147667
  59741
 GRCh38
 Duplication
 No
  engchuan_15_ASD_discovery_cases-case13154_1713
 N/A
 N/A
 ASD
 Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
 
 33092117
 33147667
  55551
 GRCh38
 Duplication
 No
  engchuan_15_ASD_discovery_cases-case14214_3450
 N/A
 N/A
 ASD
 Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
 
 33092117
 33147667
  55551
 GRCh38
 Duplication
 No
  engchuan_15_ASD_discovery_cases-case3313_3
 N/A
 N/A
 ASD
 Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
 
 33092117
 33147667
  55551
 GRCh38
 Duplication
 No
  engchuan_15_ASD_discovery_cases-case5216_3
 N/A
 N/A
 ASD
 Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
 
 33093595
 33147667
  54073
 GRCh38
 Duplication
 No
  engchuan_15_ASD_discovery_cases-case6142_3
 N/A
 N/A
 ASD
 Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
 
 33087927
 33147667
  59741
 GRCh38
 Duplication
 No
  gai_11_ASD_discovery_cases-AU1197301
 
 
 Autism
 
 
 32169747
 32383787
  214041
 GRCh38
 Duplication
 No
  gai_11_ASD_discovery_cases-AU1197302
 
 
 Autism
 
 
 32169615
 32383787
  214173
 GRCh38
 Duplication
 No
  gazzellone_14_ASD_discovery_cases-case505-3
 N/A
 M
 ASD
 ASD; no other clinical information provided
 N/A
 31642151
 31882136
  239986
 GRCh38
 Duplication
 No
  glessner_09_ASD_discovery_cases-AU15404
 NA
 
 ASD
 NA
 NA
 32660950
 32764576
  103627
 GRCh38
 Duplication
 No
  glessner_09_ASD_discovery_cases-AU33404
 NA
 
 ASD
 NA
 NA
 32660950
 32764576
  103627
 GRCh38
 Duplication
 No
  glessner_09_ASD_discovery_cases-AU41703
 NA
 
 ASD
 NA
 NA
 32660950
 32764576
  103627
 GRCh38
 Duplication
 Yes
  glessner_09_ASD_discovery_cases-AU69803
 NA
 
 ASD
 NA
 NA
 32660950
 32764576
  103627
 GRCh38
 Duplication
 No
  kaminsky_11_DD/ID/ASD_discovery_cases-ISCA00002350
 NA
 NA
 Developmental delay/intellectual disability/ASD
 Clinical profile NA
 Cognitive profile NA
 33130103
 33146967
  16865
 GRCh38
 Duplication
 Yes
  krumm_13_ASD_discovery_cases-case12473.p1
 N/A
 M
 ASD
 ASD proband from SSC quad family 12473. SRS score of 88.
 Full-scale IQ (FSIQ) score of 49.
 33905613
 33974784
  69172
 GRCh38
 Duplication
 No (not tested)
  krumm_13_ASD_discovery_cases-case13412.p1
 N/A
 M
 ASD
 ASD proband from SSC quad family 13412. SRS score of 90.
 Full-scale IQ (FSIQ) score of 33.
 33062567
 33146364
  83798
 GRCh38
 Duplication
 No (not tested)
  krumm_15_ASD_discovery_cases-case11043.p1
 N/A
 Female
 ASD
 Proband from the Simons Simplex Collection (SSC). Family type: Trio
 
 33096492
 33146364
  49873
 GRCh38
 Duplication
 Yes
  krumm_15_ASD_discovery_cases-case11106.p1
 N/A
 Male
 ASD
 Proband from the Simons Simplex Collection (SSC). Family type: Quad
 
 31577862
 31697117
  119256
 GRCh38
 Duplication
 Yes
  krumm_15_ASD_discovery_cases-case11346.p1
 N/A
 Male
 ASD
 Proband from the Simons Simplex Collection (SSC). Family type: Trio
 
 33095233
 33146364
  51132
 GRCh38
 Duplication
 Yes
  krumm_15_ASD_discovery_cases-case11396.p1
 N/A
 Male
 ASD
 Proband from the Simons Simplex Collection (SSC). Family type: Trio
 
 33096492
 33146364
  49873
 GRCh38
 Duplication
 Yes
  krumm_15_ASD_discovery_cases-case12121.p1
 N/A
 Male
 ASD
 Proband from the Simons Simplex Collection (SSC). Family type: Quad
 
 33095233
 33146364
  51132
 GRCh38
 Duplication
 Yes
  krumm_15_ASD_discovery_cases-case12667.p1
 N/A
 Male
 ASD
 Proband from the Simons Simplex Collection (SSC). Family type: Trio
 
 33096492
 33146364
  49873
 GRCh38
 Duplication
 Yes
  krumm_15_ASD_discovery_cases-case13412.p1
 N/A
 Male
 ASD
 Proband from the Simons Simplex Collection (SSC). Family type: Quad
 
 33095233
 33146364
  51132
 GRCh38
 Duplication
 Yes
  krumm_15_ASD_discovery_cases-case13531.p1
 N/A
 Male
 ASD
 Proband from the Simons Simplex Collection (SSC). Family type: Quad
 
 33095233
 33146364
  51132
 GRCh38
 Duplication
 Yes
  krumm_15_ASD_discovery_cases-case13578.p1
 N/A
 Male
 ASD
 Proband from the Simons Simplex Collection (SSC). Family type: Quad
 
 33096492
 33146364
  49873
 GRCh38
 Duplication
 Yes
  krumm_15_ASD_discovery_cases-case14046.p1
 N/A
 Male
 ASD
 Proband from the Simons Simplex Collection (SSC). Family type: Quad
 
 33095233
 33146364
  51132
 GRCh38
 Duplication
 Yes
  krumm_15_ASD_discovery_cases-case14237.p1
 N/A
 Male
 ASD
 Proband from the Simons Simplex Collection (SSC). Family type: Quad
 
 29194941
 29496036
  301096
 GRCh38
 Duplication
 Yes
  maini_18_ASD/DD/ID_discovery_cases-case_unknown186
  NA NA
 N/A
 N/A
 NDD/MCA/dysmorphic features
 CNV was identified in an individual with one or more neurodevelopmental disorders (NDD), multiple congenital anomalies (MCA), and/or dysmorphic features (detailed clinical information was not available). CNV classified as variant of unknown significance-likely benign (VOUS-LB)
 
 29192372
 29480306
  287935
 GRCh38
 Duplication
 No
  nord_11_ASD_discovery_cases-209-1
 
 
 ASD
 
 
 33882259
 33903411
  21153
 Unknown
 Duplication
 No
  nord_11_ASD_discovery_cases-242-1
 
 
 ASD
 
 
 34911248
 35098004
  186757
 Unknown
 Duplication
 No
  o'roak_12_ASD_discovery_cases-case11346.p1
 NA
 M
 ASD/Autism
 Case also identified with de novo CNST missense mutation and de novo SLC17A6 synonymous mutation. No additional clinical info available.
 High IQ. Non verbal IQ, 132
 33091216
 33147667
  56452
 GRCh38
 Duplication
 Yes
  pinto_10_ASD_discovery_cases-case1116_4
 NA
 M
 ASD
 NA
 NA
 33087927
 33147667
  59741
 GRCh38
 Duplication
 Yes
  pinto_10_ASD_discovery_cases-case1240_3
 NA
 M
 ASD
 NA
 NA
 33087927
 33147667
  59741
 GRCh38
 Duplication
 Yes
  pinto_10_ASD_discovery_cases-case5216_3
 NA
 M
 ASD
 NA
 NA
 33093595
 33147667
  54073
 GRCh38
 Duplication
 Yes
  poultney_13_ASD_discovery_cases-case01HI1926A
 N/A
 M
 ASD
 ASD case from AGRE (AGRE ID AU066003; NDAR ID NDAR_INVFE444DNR)
 
 33097269
 33146366
  49098
 GRCh38
 Duplication
 No
  poultney_13_ASD_discovery_cases-case01HI2322A
 N/A
 M
 ASD
 ASD case from AGRE (AGRE ID AU027304; NDAR ID NDAR_INVVE717WXZ)
 
 33097269
 33146366
  49098
 GRCh38
 Duplication
 No
  poultney_13_ASD_discovery_cases-case05HI3668A
 N/A
 M
 ASD
 ASD case from AGRE (AGRE ID AU1424302; NDAR ID NDAR_INVNV776HU9)
 
 33097269
 33146366
  49098
 GRCh38
 Duplication
 No
  prasad_12_ASD_discovery_cases-case78621
 NA
 F
 ASD
 Diagnosis of ASD based on meeting criteria on ADI-R and/or ADOS. Novel CNV
 
 34110362
 34118370
  8009
 Unknown
 Deletion
 No
  sajan_13_ACC/CBLH/PMG_discovery_cases-case1006-0
 N/A
 M
 ACC
 Diagnosis of agenesis of the corpus callosum (ACC). ASD: no. Seizures: no. Neurological features: spastic diplegic cerebral palsy, hypotonia, hyporeflexia, diminished strength, fine motor delay, visual motor delay. Dysmorphic features: prominent forehead, prominent ears, high arched palate. Ocular and auditory problems: chronic otitis media, hyperopia. Gastrointestinal problems: problems with swallowing, reflux, constipation. Musculoskeletal problems: pectus excavatum. Brain imaging: complete ACC, normal pituitary gland, large ventricle size, no Probst bundles, decreased white matter volume, and abnormal myelination observed on brain MRI.
 Developmental delay: yes. Intellectual disability: yes.
 32171821
 32383787
  211967
 GRCh38
 Duplication
 No
  sajan_13_ACC/CBLH/PMG_discovery_cases-caseLR08-289
 N/A
 N/A
 PMG
 Diagnosis of polymicrogyria (PMG).
 
 33092117
 33147667
  55551
 GRCh38
 Duplication
 No
  sanders_11_ASD_discovery_cases-11043.p1
 8.4
 F
 Autism
 NA
 Full-scale IQ, 104; non-verbal IQ, 103; verbal IQ, 106
 33092117
 33147667
  55551
 GRCh38
 Duplication
 No
  sanders_11_ASD_discovery_cases-11346.p1
 11
 M
 Autism
 NA
 Full-scale IQ, 133; non-verbal IQ, 132; verbal IQ, 121
 33087927
 33147667
  59741
 GRCh38
 Duplication
 No
  sanders_11_ASD_discovery_cases-11396.p1
 13.6
 M
 Autism
 NA
 Full-scale IQ, 124; non-verbal IQ, 124; verbal IQ, 118
 33092117
 33147667
  55551
 GRCh38
 Duplication
 No
  sanders_11_ASD_discovery_cases-11455.p1
 7.6
 M
 ASD
 NA
 Full-scale IQ, 68; non-verbal IQ, 73; verbal IQ, 69
 32412003
 32418209
  6207
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-12117.p1
 9.6
 M
 Autism
 NA
 Full-scale IQ, 68; non-verbal IQ, 76; verbal IQ, 56
 34859623
 34871731
  12109
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-12121.p1
 8.5
 M
 Autism
 NA
 Full-scale IQ, 130; non-verbal IQ, 134; verbal IQ, 110
 33092117
 33147667
  55551
 GRCh38
 Duplication
 No
  sanders_11_ASD_discovery_cases-12160.p1
 8.3
 M
 Autism
 NA
 Full-scale IQ, 100; non-verbal IQ, 108; verbal IQ, 86
 33290476
 33296378
  5903
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-12184.p1
 12.9
 F
 Autism
 NA
 Full-scale IQ, 28; non-verbal IQ, 31; verbal IQ, 21
 34859623
 34871731
  12109
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-12221.p1
 4.1
 M
 Autism
 NA
 Full-scale IQ, 89; non-verbal IQ, 99; verbal IQ, 76
 34859623
 34871731
  12109
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-12667.p1
 6.3
 M
 Autism
 NA
 Full-scale IQ, 34; non-verbal IQ, 49; verbal IQ, 19
 33092117
 33147667
  55551
 GRCh38
 Duplication
 No
  tropeano_16_ASD_discovery_cases-MAAS19
 30-39 yrs.
 M
 ASD
 Case diagnosed with autism based on ICD-10 research criteria; diagnosis confirmed using ADOS and ADI-R.
 
 31970800
 34451910
  2481111
 GRCh38
 Deletion
 Yes
  wenger_16_ASD_discovery_cases-case33
 N/A
 N/A
 ASD
 Prior clinical diagnosis of genetic syndrome: n/a
 
 32202255
 32383787
  181533
 GRCh38
 Duplication
 No
  yin_16_ASD_discovery_cases-case260
 N/A
 N/A
 ASD
 Cases diagnosed with autistic disorder according to DSM-IV and confirmed by using the Chinese version of ADI-R.
 
 30769481
 30971870
  202390
 GRCh38
 Deletion
 No

Controls

Patient ID
Author, Year
Age
Gender
Primary Diagnosis
Clinical Profile
Cognitive Profile
CNV Start
CNV End
CNV Size
Genome Build
Type Method
Validation
  engchuan_15_ASD_discovery_controls-controlB228946_1007854752
  N/A
  N/A
  Control
  No previous psychiatric history
 
  32169615
  32383787
  214173
  GRCh38
  Duplication
  No
  engchuan_15_ASD_discovery_controls-controlB230179_1007841236
  N/A
  N/A
  Control
  No previous psychiatric history
 
  33402258
  33510429
  108172
  GRCh38
  Deletion
  No
  engchuan_15_ASD_discovery_controls-controlB291419_1007842029
  N/A
  N/A
  Control
  No previous psychiatric history
 
  33092117
  33147667
  55551
  GRCh38
  Duplication
  No
  engchuan_15_ASD_discovery_controls-controlB295710_1007841796
  N/A
  N/A
  Control
  No previous psychiatric history
 
  33092117
  33147667
  55551
  GRCh38
  Duplication
  No
  engchuan_15_ASD_discovery_controls-controlB618029_1007874552
  N/A
  N/A
  Control
  No previous psychiatric history
 
  33092117
  33147667
  55551
  GRCh38
  Duplication
  No
  engchuan_15_ASD_discovery_controls-controlB752269_1007854332
  N/A
  N/A
  Control
  No previous psychiatric history
 
  34913348
  35090166
  176819
  GRCh38
  Duplication
  No
  engchuan_15_ASD_discovery_controls-controlB771183_1007874859
  N/A
  N/A
  Control
  No previous psychiatric history
 
  32169747
  32388842
  219096
  GRCh38
  Duplication
  No
  engchuan_15_ASD_discovery_controls-controlB806145_1007873615
  N/A
  N/A
  Control
  No previous psychiatric history
 
  33087927
  33147667
  59741
  GRCh38
  Duplication
  No
  engchuan_15_ASD_discovery_controls-controlB828621_0057060997
  N/A
  N/A
  Control
  No previous psychiatric history
 
  33092117
  33147667
  55551
  GRCh38
  Duplication
  No
  engchuan_15_ASD_discovery_controls-controlHABC_900213_900213
  N/A
  N/A
  Control
  No previous psychiatric history
 
  33092117
  33147667
  55551
  GRCh38
  Duplication
  No
  engchuan_15_ASD_discovery_controls-controlHABC_900812_900812
  N/A
  N/A
  Control
  No previous psychiatric history
 
  33092117
  33147667
  55551
  GRCh38
  Duplication
  No
  engchuan_15_ASD_discovery_controls-controlHABC_901191_901191
  N/A
  N/A
  Control
  No previous psychiatric history
 
  33092117
  33147667
  55551
  GRCh38
  Duplication
  No
  engchuan_15_ASD_discovery_controls-controlHABC_902528_902528
  N/A
  N/A
  Control
  No previous psychiatric history
 
  33092117
  33147667
  55551
  GRCh38
  Duplication
  No
  engchuan_15_ASD_discovery_controls-controlHABC_903002_903002
  N/A
  N/A
  Control
  No previous psychiatric history
 
  33092117
  33147667
  55551
  GRCh38
  Duplication
  No
  girirajan_13b_ASD_discovery_controls-11210113056
  N/A
  N/A
  Control
  Ethnicity: Caucasian
  N/A
  32174460
  32347836
  173377
  GRCh38
  Duplication
  No
  girirajan_13b_ASD_discovery_controls-34108110389
  N/A
  N/A
  Control
  Ethnicity: Caucasian
  N/A
  33241098
  33384134
  143037
  GRCh38
  Deletion
  No
  krumm_13_ASD_discovery_controls-control13116.s1
  N/A
  F
  Control
  Unaffected sibling from SSC quad family 13116. SRS score of 42.
 
  33095233
  33146364
  51132
  GRCh38
  Duplication
  No (not tested)
  krumm_15_ASD_discovery_controls-control11106.s1
  N/A
  Male
  Control
  Unaffected sibling from the Simons Simplex Collection (SSC)
 
  31577862
  31697117
  119256
  GRCh38
  Duplication
  Yes
  krumm_15_ASD_discovery_controls-control12030.s1
  N/A
  Female
  Control
  Unaffected sibling from the Simons Simplex Collection (SSC)
 
  30628559
  30632439
  3881
  GRCh38
  Deletion
  Yes
  krumm_15_ASD_discovery_controls-control13578.s1
  N/A
  Female
  Control
  Unaffected sibling from the Simons Simplex Collection (SSC)
 
  33095233
  33146364
  51132
  GRCh38
  Duplication
  Yes
  krumm_15_ASD_discovery_controls-control14046.s1
  N/A
  Male
  Control
  Unaffected sibling from the Simons Simplex Collection (SSC)
 
  33095233
  33146364
  51132
  GRCh38
  Duplication
  Yes
  krumm_15_ASD_discovery_controls-control14123.s1
  N/A
  Female
  Control
  Unaffected sibling from the Simons Simplex Collection (SSC)
 
  33095233
  33146364
  51132
  GRCh38
  Duplication
  Yes
  krumm_15_ASD_discovery_controls-control14452.s1
  N/A
  Male
  Control
  Unaffected sibling from the Simons Simplex Collection (SSC)
 
  33095233
  33146364
  51132
  GRCh38
  Duplication
  Yes
  nord_11_ASD_discovery_controls-04C26873
 
 
  Control
 
 
  33289324
  33304366
  15043
  Unknown
  Deletion
 
  poultney_13_ASD_discovery_controls-control04C38489A
  N/A
  F
  Control
  NIMH Control (NIMH ID 63165)
 
  33605193
  34153275
  548083
  GRCh38
  Deletion
  No
  sanders_11_ASD_discovery_controls-11379.s1
  8.3
  F
  Control (matched sibling)
  NA
  NA
  32510500
  32512075
  1576
  GRCh38
  Deletion
  No
  sanders_11_ASD_discovery_controls-11445.s1
  9.5
  F
  Control (matched sibling)
  NA
  NA
  34848398
  34871731
  23334
  GRCh38
  Deletion
  No
  sanders_11_ASD_discovery_controls-11445.s1
  9.5
  F
  Control (matched sibling)
  NA
  NA
  32751955
  32786560
  34606
  GRCh38
  Duplication
  No
  sanders_11_ASD_discovery_controls-11455.s1
  8.9
  F
  Control (matched sibling)
  NA
  NA
  32412003
  32418209
  6207
  GRCh38
  Deletion
  No
  sanders_11_ASD_discovery_controls-11476.s1
  10.8
  F
  Control (matched sibling)
  NA
  NA
  32169747
  32383787
  214041
  GRCh38
  Duplication
  No
  sanders_11_ASD_discovery_controls-11505.s1
  9.9
  F
  Control (matched sibling)
  NA
  NA
  34859623
  34879262
  19640
  GRCh38
  Deletion
  No
  sanders_11_ASD_discovery_controls-12184.s1
  10.4
  F
  Control (matched sibling)
  NA
  NA
  34859623
  34871731
  12109
  GRCh38
  Deletion
  No
  sanders_11_ASD_discovery_controls-12189.s1
  6.7
  F
  Control (matched sibling)
  NA
  NA
  34859623
  34871731
  12109
  GRCh38
  Deletion
  No
  sanders_11_ASD_discovery_controls-13128.s1
  8.8
  M
  Control (matched sibling)
  NA
  NA
  34299735
  34409047
  109313
  GRCh38
  Deletion
  No
  sanders_11_ASD_discovery_controls-13128.s1
  8.8
  M
  Control (matched sibling)
  NA
  NA
  34411268
  34441980
  30713
  GRCh38
  Deletion
  No

Cases

Patient ID
Validation Description
Primary Disorder Inheritence
Inheritence
Family Profile
Disease Segregation
Gene Content
Altered Gene Expression
 bitar_19_ASD_discovery_cases-case114
 qPCR
 
 Maternal
 
 
 PDE1C
 
 digregorio_17_DD/ID_discovery_cases-DECIPHER_300210
 
 
 Paternal
 
 
 NANOGP4,CPVL,CHN2
 
 engchuan_15_ASD_discovery_cases-case1116_4
 
 
 Unknown
 
 
 RP9,BBS9
 
 engchuan_15_ASD_discovery_cases-case1240_3
 
 
 Unknown
 
 
 RP9,BBS9
 
 engchuan_15_ASD_discovery_cases-case13154_1713
 
 
 Unknown
 
 
 RP9,BBS9
 
 engchuan_15_ASD_discovery_cases-case14214_3450
 
 
 Unknown
 
 
 RP9,BBS9
 
 engchuan_15_ASD_discovery_cases-case3313_3
 
 
 Unknown
 
 
 RP9,BBS9
 
 engchuan_15_ASD_discovery_cases-case5216_3
 
 
 Unknown
 
 
 RP9,BBS9
 
 engchuan_15_ASD_discovery_cases-case6142_3
 
 
 Unknown
 
 
 RP9,BBS9
 
 gai_11_ASD_discovery_cases-AU1197301
 
 
 Inherited
 
 
 PDE1C
 
 gai_11_ASD_discovery_cases-AU1197302
 
 
 Inherited
 
 
 PDE1C
 
 gazzellone_14_ASD_discovery_cases-case505-3
 
 
 Unknown
 Unknown
 Unknown
 PPP1R17,ITPRID1,PDE1C
 
 glessner_09_ASD_discovery_cases-AU15404
 
 
 Unknown
 Unknown
 NA
 MIR550A2,MIR550B2,LINC00997,ZNRF2P1,DPY19L1P1
 
 glessner_09_ASD_discovery_cases-AU33404
 
 
 Unknown
 Unknown
 NA
 MIR550A2,MIR550B2,LINC00997,ZNRF2P1,DPY19L1P1
 
 glessner_09_ASD_discovery_cases-AU41703
 qPCR
 
 Unknown
 Unknown
 NA
 MIR550A2,MIR550B2,LINC00997,ZNRF2P1,DPY19L1P1
 
 glessner_09_ASD_discovery_cases-AU69803
 
 
 Unknown
 Unknown
 NA
 MIR550A2,MIR550B2,LINC00997,ZNRF2P1,DPY19L1P1
 
 kaminsky_11_DD/ID/ASD_discovery_cases-ISCA00002350
 FISH, qPCR, MLPA, aCGH, or standard G-banded chromosome analysis
 
 Maternal
 Unknown
 Unknown
 BBS9
 
 krumm_13_ASD_discovery_cases-case12473.p1
 
 
 Paternal
 Simplex
 Segregated
 BMPER
 
 krumm_13_ASD_discovery_cases-case13412.p1
 
 
 Paternal
 Simplex
 Segregated
 RP9,NT5C3A,BBS9
 
 krumm_15_ASD_discovery_cases-case11043.p1
 Illumina 1M
 
 Maternal
 Simplex
 Segregated
 RP9,BBS9
 
 krumm_15_ASD_discovery_cases-case11106.p1
 Illumina 1M
 
 Maternal
 Simplex
 Not segregated (CNV in unaffected sibling)
 PPP1R17,ITPRID1
 
 krumm_15_ASD_discovery_cases-case11346.p1
 Illumina 1M
 
 Maternal
 Simplex
 Segregated
 RP9,BBS9
 
 krumm_15_ASD_discovery_cases-case11396.p1
 Illumina 1M
 
 Paternal
 Simplex
 Segregated
 RP9,BBS9
 
 krumm_15_ASD_discovery_cases-case12121.p1
 Illumina 1MDuo
 
 Paternal
 Simplex
 Segregated
 RP9,BBS9
 
 krumm_15_ASD_discovery_cases-case12667.p1
 Illumina 1MDuo
 
 Paternal
 Simplex
 Segregated
 RP9,BBS9
 
 krumm_15_ASD_discovery_cases-case13412.p1
 1M-Duov3
 
 Paternal
 Simplex
 Segregated
 RP9,BBS9
 
 krumm_15_ASD_discovery_cases-case13531.p1
 1M-Duov3
 
 Maternal
 Simplex
 Segregated
 RP9,BBS9
 
 krumm_15_ASD_discovery_cases-case13578.p1
 1M-Duov3
 
 Maternal
 Simplex
 Not segregated (CNV in unaffected sibling)
 RP9,BBS9
 
 krumm_15_ASD_discovery_cases-case14046.p1
 Omni2.5-4v1
 
 Maternal
 Simplex
 Not segregated (CNV in unaffected sibling)
 RP9,BBS9
 
 krumm_15_ASD_discovery_cases-case14237.p1
 Omni2.5-4v1
 
 Paternal
 Simplex
 Segregated
 NANOGP4,CPVL,CHN2
 
 maini_18_ASD/DD/ID_discovery_cases-case_unknown186
 
 
 Unknown
 Unknown
 Unknown
 NANOGP4,CPVL,CHN2
 
 nord_11_ASD_discovery_cases-209-1
 
 
 Maternal
 
 
 0 genes
 
 nord_11_ASD_discovery_cases-242-1
 
 
 Maternal
 
 
 DPY19L1,DPY19L2P1
 
 o'roak_12_ASD_discovery_cases-case11346.p1
 aCGH, Sanger sequencing
 
 Maternal
 Simplex (quad)
 Unknown
 RP9,BBS9
 
 pinto_10_ASD_discovery_cases-case1116_4
 Illumina550;Affy5.0
 
 paternal
 NA
 NA
 RP9,BBS9
 
 pinto_10_ASD_discovery_cases-case1240_3
 Illumina550;Affy5.0
 
 maternal
 NA
 NA
 RP9,BBS9
 
 pinto_10_ASD_discovery_cases-case5216_3
 Agilent1M
 
 Both parents
 NA
 NA
 RP9,BBS9
 
 poultney_13_ASD_discovery_cases-case01HI1926A
 
 
 Unknown
 Unknown (likely multiplex/AGRE)
 Unknown
 RP9,BBS9
 
 poultney_13_ASD_discovery_cases-case01HI2322A
 
 
 Unknown
 Unknown (likely multiplex/AGRE)
 Unknown
 RP9,BBS9
 
 poultney_13_ASD_discovery_cases-case05HI3668A
 
 
 Unknown
 Unknown (likely multiplex/AGRE)
 Unknown
 RP9,BBS9
 
 prasad_12_ASD_discovery_cases-case78621
 
 
 Unknown
 Unknown
 Unknown
 BMPER
 
 sajan_13_ACC/CBLH/PMG_discovery_cases-case1006-0
 Not tested by qPCR
 
 Unknown
 Unknown
 Unknown
 PDE1C
 
 sajan_13_ACC/CBLH/PMG_discovery_cases-caseLR08-289
 Not tested by qPCR
 
 Unknown
 Unknown
 Unknown
 RP9,BBS9
 
 sanders_11_ASD_discovery_cases-11043.p1
 
 
 Maternal
 Simplex (quad-proband matched)
 Segregated
 RP9,BBS9
 
 sanders_11_ASD_discovery_cases-11346.p1
 
 
 Maternal
 Simplex (quad-proband matched)
 Not segregated
 RP9,BBS9
 
 sanders_11_ASD_discovery_cases-11396.p1
 
 
 Paternal
 Simplex (quad-proband matched)
 Segregated
 RP9,BBS9
 
 sanders_11_ASD_discovery_cases-11455.p1
 
 
 Maternal
 Simplex (quad-proband matched)
 Not segregated
 
 
 sanders_11_ASD_discovery_cases-12117.p1
 
 
 Paternal
 Simplex (quad-proband matched)
 Segregated
 NPSR1,NPSR1-AS1
 
 sanders_11_ASD_discovery_cases-12121.p1
 
 
 Paternal
 Simplex (quad-proband matched)
 Not segregated
 RP9,BBS9
 
 sanders_11_ASD_discovery_cases-12160.p1
 
 
 Paternal
 Simplex (quad-proband unmatched)
 Unknown
 BBS9
 
 sanders_11_ASD_discovery_cases-12184.p1
 
 
 Paternal
 Simplex (quad-proband matched)
 Not segregated
 NPSR1,NPSR1-AS1
 
 sanders_11_ASD_discovery_cases-12221.p1
 
 
 Maternal
 Simplex (quad-proband unmatched)
 Unknown
 NPSR1,NPSR1-AS1
 
 sanders_11_ASD_discovery_cases-12667.p1
 
 
 Paternal
 Simplex (quad-proband matched)
 Not segregated
 RP9,BBS9
 
 tropeano_16_ASD_discovery_cases-MAAS19
 MLPA or aCGH
 
 Unknown
 Unknown
 Unknown
 SLC25A5P5,MIR550A2,MIR550B2,LINC00997,RNU6-388P,RPS29P14,RN7SL505P,RNA5SP229,RNU6-438P,LSM5,ZNRF2P1,DPY19L1P2,KBTBD2,RP9P,FKBP9,RP9,PDE1C,DPY19L1P1,NT5C3A,BMPER,AVL9,NPSR1-AS1,BBS9
 
 wenger_16_ASD_discovery_cases-case33
 
 
 Unknown
 
 
 PDE1C
 
 yin_16_ASD_discovery_cases-case260
 
 
 Unknown
 Unknown
 Unknown
 AQP1,GHRHR,INMT-MINDY4,MINDY4
 

Controls

Patient ID
Validation Description
Primary Disorder Inheritence
Inheritence
Family Profile
Disease Segregation
Gene Content
Altered Gene Expression
engchuan_15_ASD_discovery_controls-controlB228946_1007854752
 
 
  Unknown
 
 
  PDE1C
 
engchuan_15_ASD_discovery_controls-controlB230179_1007841236
 
 
  Unknown
 
 
  BBS9
 
engchuan_15_ASD_discovery_controls-controlB291419_1007842029
 
 
  Unknown
 
 
  RP9,BBS9
 
engchuan_15_ASD_discovery_controls-controlB295710_1007841796
 
 
  Unknown
 
 
  RP9,BBS9
 
engchuan_15_ASD_discovery_controls-controlB618029_1007874552
 
 
  Unknown
 
 
  RP9,BBS9
 
engchuan_15_ASD_discovery_controls-controlB752269_1007854332
 
 
  Unknown
 
 
  MIR548N,DPY19L1,DPY19L2P1
 
engchuan_15_ASD_discovery_controls-controlB771183_1007874859
 
 
  Unknown
 
 
  PDE1C
 
engchuan_15_ASD_discovery_controls-controlB806145_1007873615
 
 
  Unknown
 
 
  RP9,BBS9
 
engchuan_15_ASD_discovery_controls-controlB828621_0057060997
 
 
  Unknown
 
 
  RP9,BBS9
 
engchuan_15_ASD_discovery_controls-controlHABC_900213_900213
 
 
  Unknown
 
 
  RP9,BBS9
 
engchuan_15_ASD_discovery_controls-controlHABC_900812_900812
 
 
  Unknown
 
 
  RP9,BBS9
 
engchuan_15_ASD_discovery_controls-controlHABC_901191_901191
 
 
  Unknown
 
 
  RP9,BBS9
 
engchuan_15_ASD_discovery_controls-controlHABC_902528_902528
 
 
  Unknown
 
 
  RP9,BBS9
 
engchuan_15_ASD_discovery_controls-controlHABC_903002_903002
 
 
  Unknown
 
 
  RP9,BBS9
 
girirajan_13b_ASD_discovery_controls-11210113056
 
 
  Unknown
 
 
  PDE1C
 
girirajan_13b_ASD_discovery_controls-34108110389
 
 
  Unknown
 
 
  BBS9
 
krumm_13_ASD_discovery_controls-control13116.s1
 
 
  Maternal
  Simplex
 
  RP9,BBS9
 
krumm_15_ASD_discovery_controls-control11106.s1
  Illumina 1M
 
  Maternal
 
 
  PPP1R17,ITPRID1
 
krumm_15_ASD_discovery_controls-control12030.s1
  Illumina 1MDuo
 
  Paternal
 
 
  GARS
 
krumm_15_ASD_discovery_controls-control13578.s1
  1M-Duov3
 
  Maternal
 
 
  RP9,BBS9
 
krumm_15_ASD_discovery_controls-control14046.s1
  Omni2.5-4v1
 
  Maternal
 
 
  RP9,BBS9
 
krumm_15_ASD_discovery_controls-control14123.s1
  Omni2.5-4v1
 
  Maternal
 
 
  RP9,BBS9
 
krumm_15_ASD_discovery_controls-control14452.s1
  Omni2.5-4v1
 
  Paternal
 
 
  RP9,BBS9
 
nord_11_ASD_discovery_controls-04C26873
 
 
 
 
 
  BBS9
 
poultney_13_ASD_discovery_controls-control04C38489A
 
 
  Unknown
 
 
  BMPER,BBS9
 
sanders_11_ASD_discovery_controls-11379.s1
 
 
  Maternal
  Simplex (quad)
  NA
  AVL9
 
sanders_11_ASD_discovery_controls-11445.s1
 
 
  Maternal
  Simplex (quad)
  NA
  NPSR1,NPSR1-AS1
 
sanders_11_ASD_discovery_controls-11445.s1
 
 
  Maternal
  Simplex (quad)
  NA
  LINC00997,ZNRF2P1,DPY19L1P1
 
sanders_11_ASD_discovery_controls-11455.s1
 
 
  Maternal
  Simplex (quad)
  NA
 
 
sanders_11_ASD_discovery_controls-11476.s1
 
 
  Maternal
  Simplex (quad)
  NA
  PDE1C
 
sanders_11_ASD_discovery_controls-11505.s1
 
 
  Maternal
  Simplex (quad)
  NA
  NPSR1,NPSR1-AS1
 
sanders_11_ASD_discovery_controls-12184.s1
 
 
  Paternal
  Simplex (quad)
  NA
  NPSR1,NPSR1-AS1
 
sanders_11_ASD_discovery_controls-12189.s1
 
 
  Paternal
  Simplex (quad)
  NA
  NPSR1,NPSR1-AS1
 
sanders_11_ASD_discovery_controls-13128.s1
 
 
  Maternal
  Simplex (quad)
  NA
  NPSR1-AS1
 
sanders_11_ASD_discovery_controls-13128.s1
 
 
  Maternal
  Simplex (quad)
  NA
  NPSR1-AS1
 

No Animal Model Data Available
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