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3q26.33-q28CNV Type: Deletion


Largest CNV size: 5740475 bp

Statistics Box:
Number of Reports: 2



Summary Information

Rare singleton deletion within this region was found in a case from a study of 15,749 individuals from the International Standards for Cytogenomic Arrays (ISCA) consortium with unexplained developmental delay, intellectual disability, dysmorphic features, multiple congenital anomalies, autism spectrum disorders, or clinical features suggestive of a chromosomal syndrome (Kaminsky et al., 2011).

Additional Locus Information

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USCS Symbol             NCBI Symbol

Decipher

            Decipher Symbol

References

Major Reports

Title
Author, Year
Report Class
CNV Type
An evidence-based approach to establish the functional and clinical significance of copy number variants in intellectual and developmental disabili...
Deletion
Detection of clinically relevant copy-number variants by exome sequencing in a large cohort of genetic disorders.
Deletion

Minor Reports

Title
Author, Year
Report Class
CNV Type

No Minor Reports

Cases

Cohort ID
Author, Year
Descripton
Cohort Size
Diagnosis
Age
Gender
CNV Size
Deletion
Duplication
Total CNV's
 kaminsky_11_DD/ID/ASD_discovery_cases
 Cases from the International Standards for Cytogenomic Arrays (ISCA) consortium
 15749
 Unexplained developmental delay, intellectual disability, dysmorphic features, multiple congenital anomalies, autism spectrum disorders, or clinical features suggestive of a chromosomal syndrome
 NA
 NA
 5740475
 1
 0
 1
 pfundt_16_NDD_discovery_cases
 Subset of a cohort of 2,603 patients affected by genetic disorders for which exome seqeuncing was performed in a diagnostic setting
 1215
 Neurodevelopmental disorders
 N/A
 N/A
 8385941
 1
 0
 1

Controls

Cohort ID
Author, Year
Descripton
Cohort Size
Diagnosis
Age
Gender
CNV Size
Deletion
Duplication
Total CNV's
 kaminsky_11_DD/ID/ASD_discovery_controls
 Controls from the International Standards for Cytogenomic Arrays (ISCA) consortium
 10118
 Controls
 NA
 NA
 NA
 NA
 NA
 NA

Cases

Cohort ID
Geographical Ancestry
Discovery Method
Platform
Algorithm
Software
Validation Method
 kaminsky_11_DD/ID/ASD_discovery_cases
  NA
 aCGH
  Agilent 44K, Agilent 105K
 
 Feature Extraction, DNA Analytics
 FISH, qPCR, MLPA, aCGH, standard G-banded chromosome analysis
 pfundt_16_NDD_discovery_cases
  N/A
 WES
  Solid5500xl, IlluminaHiSeq2000
 
 CoNIFER
 Array SNP (Affymetrix CytoScan HD)

Controls

Cohort ID
Geographical Ancestry
Discovery Method
Platform
Algorithm
Software
Validation Method
  kaminsky_11_DD/ID/ASD_discovery_controls
  NA
  aCGH
  Agilent 44K, Agilent 105K
 
  Feature Extraction, DNA Analytics
 

Cases

Patient ID
Author, Year
Age
Gender
Primary Diagnosis
Clinical Profile
Cognitive Profile
CNV Start
CNV End
CNV Size
Genome Build
Type Method
Validation
  kaminsky_11_DD/ID/ASD_discovery_cases-ISCA00004511
 NA
 NA
 Developmental delay/intellectual disability/ASD
 Clinical profile NA
 Cognitive profile NA
 182678453
 188418928
  5740476
 GRCh38
 Deletion
 Yes
  pfundt_16_NDD_discovery_cases-case76
 N/A
 N/A
 NDD
 Disease cohort: neurodevelopmental disorder. Description: 8MB deletion; de novo
 
 182942770
 191328710
  8385941
 GRCh38
 Deletion
 Yes

Controls

No Control Data Available

Cases

Patient ID
Validation Description
Primary Disorder Inheritence
Inheritence
Family Profile
Disease Segregation
Gene Content
Altered Gene Expression
 kaminsky_11_DD/ID/ASD_discovery_cases-ISCA00004511
 FISH, qPCR, MLPA, aCGH, or standard G-banded chromosome analysis
 
 Unknown
 Unknown
 Unknown
 MCCC1-AS1,RNA5SP151,SNORA63D,YEATS2-AS1,MAP6D1,RPSAP31,MIR4448,EEF1A1P8,HTR3D,HTR3E-AS1,HTR3E,HSP90AA5P,AP2M1,MIR1224,ALG3,CAMK2N2,SNORD66,POLR2H,THPO,LINC01839,MAGEF1,EIF2S2P2,MIR5588,MIR548AQ,ETV5-AS1,LINC02051,CRYGS,RNU6-1105P,GPS2P2,EIF4A2,SNORD2,MIR1248,SNORA81,SNORA63,SNORA4,LINC02043,ADIPOQ-AS1,RPS20P14,RTP1,RTP4,SST,RTP2,FLJ42393,LAMP3,B3GNT5,LINC00888,KLHL6-AS1,KLHL24,PARL,CYP2AB1P,ABCC5,ABCC5-AS1,HTR3C,EIF2B5,ABCF3,VWA5B2,EEF1AKMT4,PSMD2,EIF4G1,FAM131A,CLCN2,CHRD,EPHB3,LINC02069,C3orf70,EHHADH-AS1,RPL4P4,TMEM41A,LIPH,TRA2B,NMRAL2P,ETV5,LINC02020,LINC02052,TBCCD1,DNAJB11,AHSG,HRG,KNG1,PSMD10P2,RFC4,ADIPOQ,MASP1,LINC02041,BCL6,LINC01991,LPP-AS2,ATP11B,DCUN1D1,MCCC1,MCF2L2,YEATS2,DVL3,EEF1AKMT4-ECE2,ECE2,LINC02054,VPS8,EHHADH,MAP3K13,IGF2BP2,IGF2BP2-AS1,DGKG,ST6GAL1,RPL39L,KLHL6,SENP2,FETUB,LPP,LINC01840
 
 pfundt_16_NDD_discovery_cases-case76
 Array SNP (Affymetrix CytoScan HD)
 
 De novo
 
 
 MCCC1-AS1,RNA5SP151,SNORA63D,YEATS2-AS1,MAP6D1,RPSAP31,MIR4448,EEF1A1P8,HTR3D,HTR3E-AS1,HTR3E,HSP90AA5P,AP2M1,MIR1224,ALG3,CAMK2N2,SNORD66,POLR2H,THPO,LINC01839,MAGEF1,EIF2S2P2,MIR5588,MIR548AQ,ETV5-AS1,LINC02051,CRYGS,RNU6-1105P,GPS2P2,EIF4A2,SNORD2,MIR1248,SNORA81,SNORA63,SNORA4,LINC02043,ADIPOQ-AS1,RPS20P14,RTP1,RTP4,SST,RTP2,FLJ42393,MIR28,TPRG1-AS1,TPRG1-AS2,MIR944,MTAPP2,RNU6-1109P,NMNAT1P3,GCNT1P3,RN7SKP296,LINC02013,CCT6P4,LAMP3,B3GNT5,LINC00888,KLHL6-AS1,KLHL24,PARL,CYP2AB1P,ABCC5,ABCC5-AS1,HTR3C,EIF2B5,ABCF3,VWA5B2,EEF1AKMT4,PSMD2,EIF4G1,FAM131A,CLCN2,CHRD,EPHB3,LINC02069,C3orf70,EHHADH-AS1,RPL4P4,TMEM41A,LIPH,TRA2B,NMRAL2P,ETV5,LINC02020,LINC02052,TBCCD1,DNAJB11,AHSG,HRG,KNG1,PSMD10P2,RFC4,ADIPOQ,MASP1,LINC02041,BCL6,LINC01991,LPP-AS2,LPP-AS1,P3H2-AS1,CLDN16,GMNC,UTS2B,DCUN1D1,MCCC1,MCF2L2,YEATS2,DVL3,EEF1AKMT4-ECE2,ECE2,LINC02054,VPS8,EHHADH,MAP3K13,IGF2BP2,IGF2BP2-AS1,DGKG,ST6GAL1,RPL39L,TPRG1,P3H2,CLDN1,TMEM207,IL1RAP,OSTN,OSTN-AS1,KLHL6,SENP2,FETUB,LPP,TP63,LINC01840
 

Controls

No Control Data Available
No Animal Model Data Available
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