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22q13.1-q13.33CNV Type: Duplication


Largest CNV size: 10600000 bp

Statistics Box:
Number of Reports: 3



Summary Information

A 10.6 Mb duplication in the q arm of chromosome 22 was observed in an autistic female with mitochondrial disease.

Additional Locus Information

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USCS Symbol             NCBI Symbol

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Decipher Symbol                         Decipher Symbol

References

Major Reports

Title
Author, Year
Report Class
CNV Type
Mitochondrial disease in 22q13 duplication syndrome.
Duplication
NA
Duplication
NA
Duplication

Minor Reports

Title
Author, Year
Report Class
CNV Type

No Minor Reports

Cases

Cohort ID
Author, Year
Descripton
Cohort Size
Diagnosis
Age
Gender
CNV Size
Deletion
Duplication
Total CNV's
 bitar_19_ASD_discovery_cases
  NA NA
 ASD cases selected through specialized institutions and NGOs specializing in mental disorders throughout Lebanon
 19
 Cases diagnosed with ASD using DSM-IV criteria and CARS
 N/A
 84.21% Male
 6051000
 0
 1
 1
 frye_12_ASD_discovery_cases
 Autistic female with ASD and mitochondrial disease
 1
 Case diagnosed with ASD (initial diagnosis at 3 years; DSM-IV criteria met and diagnosis confirmed at 4 years). Additional characteristics: mitochondrial disease, hypotonia, developmental delays, growth deficiency, microcephaly, facial dysmorphism, and white matter abnormalities.
 4 yrs.
 Female
 10600000
 0
 1
 1
 streata_22_ASD/DD/ID_discovery_cases
  NA NA
 Patients evaluated for global developmental delay and/or intellectual disability in pediatric, child neurology, or medical genetics departments throughout Romania who were referred to the Regional Centre for Medical Genetics for genetic testing between 2015 and 2022.
 371
 All cases presented with global developmental delay (DD) and/or intellectual disability (ID); a subset of cases also presented with autism spectrum disorder (ASD).
 Range, 6 mos.-40 yrs. (median age, 5.5 yrs.)
 63.07% Male
 10404632
 0
 1
 1

Controls

No Control Data Available

Cases

Cohort ID
Geographical Ancestry
Discovery Method
Platform
Algorithm
Software
Validation Method
 bitar_19_ASD_discovery_cases
  Lebanon
 aCGH
  Agilent SurePrint G3 2x400K
 ADM-2
 Agilent Cytogenomics v.3.0.6.6, Agilent Feature Extraction
 qPCR
 frye_12_ASD_discovery_cases
  NA
 aCGH
  GeneDX v4 oligoarray
 
 
 qPCR
 streata_22_ASD/DD/ID_discovery_cases
  Romania
 aCGH
  Agilent SurePrint G3 ISCA v.2 8x60K, Agilent 4x180K, OGT CytoSure ISCA v.2 8x60K
 NA
 Agilent CytoGenomics, OGT CytoSure Interpret
 CMA, karyotyping, and/or MLPA

Controls

No Control Data Available

Cases

Patient ID
Author, Year
Age
Gender
Primary Diagnosis
Clinical Profile
Cognitive Profile
CNV Start
CNV End
CNV Size
Genome Build
Type Method
Validation
  bitar_19_ASD_discovery_cases-case91
  NA NA
 N/A
 M
 ASD and epilepsy
 Case diagnosed with ASD using DSM-IV criteria and CARS. Behavioral/psychiatric evaluation: fear, anxiety, self-injurious behavior. Epilepsy/seizures: epilepsy. Additional medical history: deafness. Family history: born to consanguineous parents (first degree cousins); history of diabetes on both sides of the family, as well as hypertension, high cholesterol, and cardiac disease on the paternal side of the family. Note: CNV result of probable parental translocation.
 
 44776577
 50785824
  6009248
 GRCh38
 Duplication
 Yes
  frye_12_ASD_discovery_cases-case1
 4 yrs.
 F
 ASD
 Initially diagnosed with ASD at 3 years of age; at 4 years of age, met DSM-IV criteria for diagnosis of ASD, diagnosis of ASD confirmed by ADOS examination. Birth/neonatal history: born preterm at 34 weeks gestation following pregnancy complicated by oligohydramnios and diet-controlled gestational diabetes; unremarkable neonatal course. Developmental milestones: normal development until 5 months; global developmental delay (did not crawl until 21 months, did not walk until 30 months, did not say "Mama" until 3 years); Denver Developmental Scale (at 4 years) showed social milestones at 2 years of age, fine motor milestones at 15 months of age, language milestones at 1 year of age, and gross motor milestones at 3 years of age. Language and communication evaluation: non-verbal. Motor and musculoskeletal evaluation: hypotonia; muscle biopsy revealed myofiber irregularity, fibers with increased sarcoplasmic lipid, succinate dehydrogenase-hyperactive fibers, increased number of abnormal subsacrolemmal mitochondria, degenerating mitochondria, and increased lipid-like deposits; depressed electron transport chain function in muscle tissue in all complexes except complex II. Behavioral/psychiatric evaluation: unusually friendly, frequent repetitive movements. Epilepsy/seizures: suffered 10-minute generalized tonic-clonic seizure at 4 years. EEG: frequent moderate-to-high amplitude focal sharp waves, spikes, and spike-and-wave discharges from right centrotemporal region, which occasionally occurred synchronously with discharges from left centrotemporal region. Brain MRI: non-specific bilateral small focal areas of increased T2 & fluid attenuated inverse recovery signal in occipital lobes (most consistent with incomplete myelination); mild prominence of right occipital and temporal horns. Metabolic evaluation: elevated lactate, pyruvate, creatine kinase, serum alanine-to-lysine ratio, acyl-carnitines, and urine organic acids; elevated CSF lactate. Dysmorphic features: small forehead, low-set small ears, small eyes, midface hypoplasia, maculopapular rash on back, fine capillary hemangiomas on cheeks. Growth parameters: symmetric growth retardation; height, 91.5 cm (<1%ile); weight, 13 kg (<1%ile), head circumference, 46 cm (<1%ile). Family history: four siblings with no neurodevelopmental disorders; history of early dementia and bipolar disorder on paternal side, history of multiple miscarriages in mother and maternal grandmother.
 Global developmental delay
 40561491
 51186190
  10600000
 Unknown
 Duplication
 Yes
  streata_22_ASD/DD/ID_discovery_cases-case77
  NA NA
 NA
 M
 Developmental delay and intellectual disability
 Global developmental delay, speech and/or language delay or impairment, congenital anomalies, facial dysmorphism.
 Mild/moderate intellectual disability
 40335205
 50739836
  10404632
 GRCh38
 Duplication
 Yes

Controls

No Control Data Available

Cases

Patient ID
Validation Description
Primary Disorder Inheritence
Inheritence
Family Profile
Disease Segregation
Gene Content
Altered Gene Expression
 bitar_19_ASD_discovery_cases-case91
 qPCR
 
 De novo
 
 
 MIR1249,LINC01589,RNU6-1161P,MIR4762,LINC00899,PRR34,MIR3619,MIRLET7A3,MIR4763,MIRLET7B,CDPF1,PKDREJ,GTSE1-DT,TBC1D22A-AS1,MIR3201,MIR4535,RPL35P8,MIR3667,RN7SKP252,PIM3,MIR6821,PANX2,TRABD,ADM2,MIOX,LMF2,SCO2,ODF3B,KLHDC7B,RNU6-409P,NUP50-DT,NUP50,UPK3A,FAM118A,RIBC2,FBLN1,WNT7B,PRR34-AS1,MIRLET7BHG,PPARA,GTSE1,TRMU,CERK,LINC01644,LINC00898,RPL5P35,ZBED4,ALG12,CRELD2,IL17REL,TTLL8,MOV10L1,SELENOO,TUBGCP6,HDAC10,MAPK12,MAPK11,PLXNB2,DENND6B,PPP6R2,NCAPH2,TYMP,SYCE3,CPT1B,CHKB-CPT1B,MAPK8IP2,ARSA,ACR,RPL23AP82,RABL2B,PRR5-ARHGAP8,ARHGAP8,PHF21B,KIAA0930,SMC1B,ATXN10,TTC38,CELSR1,GRAMD4,TBC1D22A,TAFA5,LINC01310,C22orf34,BRD1,MLC1,SBF1,CHKB,CHKB-DT,SHANK3
 
 frye_12_ASD_discovery_cases-case1
 qPCR
 
 Unknown
 Simplex
 Unknown
 TNRC6B,ADSL,SGSM3,MKL1,SLC25A17,XPNPEP3,MCHR1,ST13,DNAJB7,RBX1,EP300,L3MBTL2,CHADL,RANGAP1,ZC3H7B,TEF,TOB2,PHF5A,ACO2,POLR3H,CSDC2,PMM1,PPPDE2,XRCC6,NHP2L1,C22orf46,MEI1,CCDC134,SREBF2,SHISA8,TNFRSF13C,CENPM,SEPT3,WBP2NL,NAGA,FAM109B,C22orf32,NDUFA6,CYP2D6,TCF20,NFAM1,RRP7A,SERHL2,POLDIP3,CYB5R3,ATP5L2,A4GALT,ARFGAP3,PACSIN2,TTLL1,BIK,MCAT,TSPO,TTLL12,SCUBE1,MPPED1,EFCAB6,SULT4A1,PNPLA5,PNPLA3,SAMM50,PARVB,PARVG,KIAA1644,LDOC1L,PRR5,PRR5-ARHGAP8,ARHGAP8,PHF21B,NUP50,KIAA0930,UPK3A,FAM118A,SMC1B,RIBC2,FBLN1,ATXN10,WNT7B,C22orf26,PPARA,C22orf40,PKDREJ,TTC38,GTSE1,TRMU,CELSR1,GRAMD4,CERK,TBC1D22A,FAM19A5,BRD1,ZBED4,ALG12,CRELD2,PIM3,IL17REL,MLC1,MOV10L1,PANX2,TRABD,SELO,TUBGCP6,HDAC10,MAPK12,MAPK11,PLXNB2,FAM116B,PPP6R2,SBF1,ADM2,MIOX,LMF2,NCAPH2,SCO2,TYMP,ODF3B,KLHDC7B,SYCE3,CPT1B,CHKB,MAPK8IP2,ARSA,SHANK3,ACR
 
 streata_22_ASD/DD/ID_discovery_cases-case77
 CMA, karyotyping, and/or MLPA
 
 De novo
 
 
 ACR,MPPED1,ACO2,ARSA,BIK,ADSL,TSPO,CHKB,CYB5R3,CYP2D7,FBLN1,COX6B1P3,CPT1B,EP300,TYMP,CYP2D6,CYP2D8P,SMC1B,ARFGAP3,SGSM3,DESI1,CSDC2,RRP7A,MCAT,GTSE1,NCAPH2,PARVB,TRMU,PRR5,MIOX,TTC38,A4GALT,MOV10L1,PRR34,FAM118A,MRTFA,PANX2,SEPTIN3,C22orf46,CENPM,CCDC134,EFCAB6,XPNPEP3,CRELD2,CERK,PARVG,ALG12,ADM2,TRABD,POLDIP3,L3MBTL2,SELENOO,SCUBE1,PNPLA3,HDAC10,RTL6,PHF5A,SHANK3,RRP7BP,SMDT1,PHF21B,SERHL,TUBGCP6,SHISAL1,LMF2,KLHDC7B,TNFRSF13C,PNPLA5,PHETA2,MEI1,PRR34-AS1,NFAM1,CDPF1,DNAJB7,CHADL,GTSE1-DT,WBP2NL,POLR3H,TTLL8,MCHR1,XRCC6,OLA1P1,ATP5MGL,SERHL2,RNU12,SLC25A5P1,MRPS18CP6,CHKB-CPT1B,RPL5P34,MIR3667HG,LINC00207,OGFRP1,LINC00898,MIRLET7BHG,IL17REL,ACTBP15,ODF3B,MIR33A,DENND6B,MIRLET7A3,PIM3,SHISA8,LINC00229,MIRLET7B,PRR5-ARHGAP8,TBC1D22A-AS1,KRT18P23,RPL35P8,SYCE3,GAPDHP37,RPL35AP36,RPL5P35,ANP32BP2,LINC01310,NDUFA6,SNU13,NAGA,CHKB-DT,NDUFA6-DT,RPL4P6,LINC00899,MIR1249,MIR1281,MIR3667,MIR3619,MIR3201,L3MBTL2-AS1,MIR4762,LINC01589,MIR4766,MIR4535,MIR4763,NUP50-DT,MIR378I,TTLL1-AS1,JTBP1,EFCAB6-AS1,GOLGA2P4,LINC01656,MRTFA-AS1,LINC01644,SCUBE1-AS1,EP300-AS1,MAPK11,RANGAP1,PMM1,PPARA,SBF1,MAPK12,SNORD13P1,MIR6821,LINC01315,MIR6889,KLHDC7B-DT,LINC01639,SCUBE1-AS2,LRRC37A14P,RN7SKP252,RN7SKP80,WNT7B,TCF20,ST13,UPK3A,SREBF2,TEF,RNU6-379P,RNU6-476P,RNU6-1161P,RNU6ATAC22P,RNU6-375P,RNU6-513P,RNU6-409P,RNU6-495P,SGSM3-AS1,FAM136EP,EFCAB6-DT,SREBF2-AS1,TBC1D22A-DT,ZBED4,SCO2,CELSR1,RBX1,PPP6R2,NUP50,TOB2,PACSIN2,SLC25A17,PKDREJ,GRAMD4,TTLL12,ZC3H7B,ATXN10,KIAA0930,TNRC6B,HMGN2P10,ARHGAP8,BRD1,TTLL1,HMGN2P9,SAMM50,SULT4A1,TBC1D22A,TAFA5,RIBC2,PLXNB2,MLC1,MAPK8IP2
 

Controls

No Control Data Available
No Animal Model Data Available
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