22q13.1-q13.33CNV Type: Duplication
Largest CNV size: 10600000 bp
Statistics Box:
Number of Reports: 3
Number of Reports: 3
Summary Information
A 10.6 Mb duplication in the q arm of chromosome 22 was observed in an autistic female with mitochondrial disease.
Additional Locus Information
References
Cases
Cohort ID
Author, Year
Descripton
Cohort Size
Diagnosis
Age
Gender
CNV Size
Deletion
Duplication
Total CNV's
bitar_19_ASD_discovery_cases
ASD cases selected through specialized institutions and NGOs specializing in mental disorders throughout Lebanon
19
Cases diagnosed with ASD using DSM-IV criteria and CARS
N/A
84.21% Male
6051000
0
1
1
frye_12_ASD_discovery_cases
Autistic female with ASD and mitochondrial disease
1
Case diagnosed with ASD (initial diagnosis at 3 years; DSM-IV criteria met and diagnosis confirmed at 4 years). Additional characteristics: mitochondrial disease, hypotonia, developmental delays, growth deficiency, microcephaly, facial dysmorphism, and white matter abnormalities.
4 yrs.
Female
10600000
0
1
1
streata_22_ASD/DD/ID_discovery_cases
Patients evaluated for global developmental delay and/or intellectual disability in pediatric, child neurology, or medical genetics departments throughout Romania who were referred to the Regional Centre for Medical Genetics for genetic testing between 2015 and 2022.
371
All cases presented with global developmental delay (DD) and/or intellectual disability (ID); a subset of cases also presented with autism spectrum disorder (ASD).
Range, 6 mos.-40 yrs. (median age, 5.5 yrs.)
63.07% Male
10404632
0
1
1
Controls
No Control Data Available
Cases
Cohort ID
Geographical Ancestry
Discovery Method
Platform
Algorithm
Software
Validation Method
bitar_19_ASD_discovery_cases
Lebanon
aCGH
Agilent SurePrint G3 2x400K
ADM-2
Agilent Cytogenomics v.3.0.6.6, Agilent Feature Extraction
qPCR
frye_12_ASD_discovery_cases
NA
aCGH
GeneDX v4 oligoarray
qPCR
streata_22_ASD/DD/ID_discovery_cases
Romania
aCGH
Agilent SurePrint G3 ISCA v.2 8x60K, Agilent 4x180K, OGT CytoSure ISCA v.2 8x60K
NA
Agilent CytoGenomics, OGT CytoSure Interpret
CMA, karyotyping, and/or MLPA
Controls
No Control Data Available
Cases
Patient ID
Author, Year
Age
Gender
Primary Diagnosis
Clinical Profile
Cognitive Profile
CNV Start
CNV End
CNV Size
Genome Build
Type Method
Validation
bitar_19_ASD_discovery_cases-case91
N/A
M
ASD and epilepsy
Case diagnosed with ASD using DSM-IV criteria and CARS. Behavioral/psychiatric evaluation: fear, anxiety, self-injurious behavior. Epilepsy/seizures: epilepsy. Additional medical history: deafness. Family history: born to consanguineous parents (first degree cousins); history of diabetes on both sides of the family, as well as hypertension, high cholesterol, and cardiac disease on the paternal side of the family. Note: CNV result of probable parental translocation.
44776577
50785824
6009248
GRCh38
Duplication
Yes
frye_12_ASD_discovery_cases-case1
4 yrs.
F
ASD
Initially diagnosed with ASD at 3 years of age; at 4 years of age, met DSM-IV criteria for diagnosis of ASD, diagnosis of ASD confirmed by ADOS examination. Birth/neonatal history: born preterm at 34 weeks gestation following pregnancy complicated by oligohydramnios and diet-controlled gestational diabetes; unremarkable neonatal course. Developmental milestones: normal development until 5 months; global developmental delay (did not crawl until 21 months, did not walk until 30 months, did not say "Mama" until 3 years); Denver Developmental Scale (at 4 years) showed social milestones at 2 years of age, fine motor milestones at 15 months of age, language milestones at 1 year of age, and gross motor milestones at 3 years of age. Language and communication evaluation: non-verbal. Motor and musculoskeletal evaluation: hypotonia; muscle biopsy revealed myofiber irregularity, fibers with increased sarcoplasmic lipid, succinate dehydrogenase-hyperactive fibers, increased number of abnormal subsacrolemmal mitochondria, degenerating mitochondria, and increased lipid-like deposits; depressed electron transport chain function in muscle tissue in all complexes except complex II. Behavioral/psychiatric evaluation: unusually friendly, frequent repetitive movements. Epilepsy/seizures: suffered 10-minute generalized tonic-clonic seizure at 4 years. EEG: frequent moderate-to-high amplitude focal sharp waves, spikes, and spike-and-wave discharges from right centrotemporal region, which occasionally occurred synchronously with discharges from left centrotemporal region. Brain MRI: non-specific bilateral small focal areas of increased T2 & fluid attenuated inverse recovery signal in occipital lobes (most consistent with incomplete myelination); mild prominence of right occipital and temporal horns. Metabolic evaluation: elevated lactate, pyruvate, creatine kinase, serum alanine-to-lysine ratio, acyl-carnitines, and urine organic acids; elevated CSF lactate. Dysmorphic features: small forehead, low-set small ears, small eyes, midface hypoplasia, maculopapular rash on back, fine capillary hemangiomas on cheeks. Growth parameters: symmetric growth retardation; height, 91.5 cm (<1%ile); weight, 13 kg (<1%ile), head circumference, 46 cm (<1%ile). Family history: four siblings with no neurodevelopmental disorders; history of early dementia and bipolar disorder on paternal side, history of multiple miscarriages in mother and maternal grandmother.
Global developmental delay
40561491
51186190
10600000
Unknown
Duplication
Yes
streata_22_ASD/DD/ID_discovery_cases-case77
NA
M
Developmental delay and intellectual disability
Global developmental delay, speech and/or language delay or impairment, congenital anomalies, facial dysmorphism.
Mild/moderate intellectual disability
40335205
50739836
10404632
GRCh38
Duplication
Yes
Controls
No Control Data Available
Cases
Patient ID
Validation Description
Primary Disorder Inheritence
Inheritence
Family Profile
Disease Segregation
Gene Content
Altered Gene Expression
bitar_19_ASD_discovery_cases-case91
qPCR
De novo
MIR1249,LINC01589,RNU6-1161P,MIR4762,LINC00899,PRR34,MIR3619,MIRLET7A3,MIR4763,MIRLET7B,CDPF1,PKDREJ,GTSE1-DT,TBC1D22A-AS1,MIR3201,MIR4535,RPL35P8,MIR3667,RN7SKP252,PIM3,MIR6821,PANX2,TRABD,ADM2,MIOX,LMF2,SCO2,ODF3B,KLHDC7B,RNU6-409P,NUP50-DT,NUP50,UPK3A,FAM118A,RIBC2,FBLN1,WNT7B,PRR34-AS1,MIRLET7BHG,PPARA,GTSE1,TRMU,CERK,LINC01644,LINC00898,RPL5P35,ZBED4,ALG12,CRELD2,IL17REL,TTLL8,MOV10L1,SELENOO,TUBGCP6,HDAC10,MAPK12,MAPK11,PLXNB2,DENND6B,PPP6R2,NCAPH2,TYMP,SYCE3,CPT1B,CHKB-CPT1B,MAPK8IP2,ARSA,ACR,RPL23AP82,RABL2B,PRR5-ARHGAP8,ARHGAP8,PHF21B,KIAA0930,SMC1B,ATXN10,TTC38,CELSR1,GRAMD4,TBC1D22A,TAFA5,LINC01310,C22orf34,BRD1,MLC1,SBF1,CHKB,CHKB-DT,SHANK3
frye_12_ASD_discovery_cases-case1
qPCR
Unknown
Simplex
Unknown
TNRC6B,ADSL,SGSM3,MKL1,SLC25A17,XPNPEP3,MCHR1,ST13,DNAJB7,RBX1,EP300,L3MBTL2,CHADL,RANGAP1,ZC3H7B,TEF,TOB2,PHF5A,ACO2,POLR3H,CSDC2,PMM1,PPPDE2,XRCC6,NHP2L1,C22orf46,MEI1,CCDC134,SREBF2,SHISA8,TNFRSF13C,CENPM,SEPT3,WBP2NL,NAGA,FAM109B,C22orf32,NDUFA6,CYP2D6,TCF20,NFAM1,RRP7A,SERHL2,POLDIP3,CYB5R3,ATP5L2,A4GALT,ARFGAP3,PACSIN2,TTLL1,BIK,MCAT,TSPO,TTLL12,SCUBE1,MPPED1,EFCAB6,SULT4A1,PNPLA5,PNPLA3,SAMM50,PARVB,PARVG,KIAA1644,LDOC1L,PRR5,PRR5-ARHGAP8,ARHGAP8,PHF21B,NUP50,KIAA0930,UPK3A,FAM118A,SMC1B,RIBC2,FBLN1,ATXN10,WNT7B,C22orf26,PPARA,C22orf40,PKDREJ,TTC38,GTSE1,TRMU,CELSR1,GRAMD4,CERK,TBC1D22A,FAM19A5,BRD1,ZBED4,ALG12,CRELD2,PIM3,IL17REL,MLC1,MOV10L1,PANX2,TRABD,SELO,TUBGCP6,HDAC10,MAPK12,MAPK11,PLXNB2,FAM116B,PPP6R2,SBF1,ADM2,MIOX,LMF2,NCAPH2,SCO2,TYMP,ODF3B,KLHDC7B,SYCE3,CPT1B,CHKB,MAPK8IP2,ARSA,SHANK3,ACR
streata_22_ASD/DD/ID_discovery_cases-case77
CMA, karyotyping, and/or MLPA
De novo
ACR,MPPED1,ACO2,ARSA,BIK,ADSL,TSPO,CHKB,CYB5R3,CYP2D7,FBLN1,COX6B1P3,CPT1B,EP300,TYMP,CYP2D6,CYP2D8P,SMC1B,ARFGAP3,SGSM3,DESI1,CSDC2,RRP7A,MCAT,GTSE1,NCAPH2,PARVB,TRMU,PRR5,MIOX,TTC38,A4GALT,MOV10L1,PRR34,FAM118A,MRTFA,PANX2,SEPTIN3,C22orf46,CENPM,CCDC134,EFCAB6,XPNPEP3,CRELD2,CERK,PARVG,ALG12,ADM2,TRABD,POLDIP3,L3MBTL2,SELENOO,SCUBE1,PNPLA3,HDAC10,RTL6,PHF5A,SHANK3,RRP7BP,SMDT1,PHF21B,SERHL,TUBGCP6,SHISAL1,LMF2,KLHDC7B,TNFRSF13C,PNPLA5,PHETA2,MEI1,PRR34-AS1,NFAM1,CDPF1,DNAJB7,CHADL,GTSE1-DT,WBP2NL,POLR3H,TTLL8,MCHR1,XRCC6,OLA1P1,ATP5MGL,SERHL2,RNU12,SLC25A5P1,MRPS18CP6,CHKB-CPT1B,RPL5P34,MIR3667HG,LINC00207,OGFRP1,LINC00898,MIRLET7BHG,IL17REL,ACTBP15,ODF3B,MIR33A,DENND6B,MIRLET7A3,PIM3,SHISA8,LINC00229,MIRLET7B,PRR5-ARHGAP8,TBC1D22A-AS1,KRT18P23,RPL35P8,SYCE3,GAPDHP37,RPL35AP36,RPL5P35,ANP32BP2,LINC01310,NDUFA6,SNU13,NAGA,CHKB-DT,NDUFA6-DT,RPL4P6,LINC00899,MIR1249,MIR1281,MIR3667,MIR3619,MIR3201,L3MBTL2-AS1,MIR4762,LINC01589,MIR4766,MIR4535,MIR4763,NUP50-DT,MIR378I,TTLL1-AS1,JTBP1,EFCAB6-AS1,GOLGA2P4,LINC01656,MRTFA-AS1,LINC01644,SCUBE1-AS1,EP300-AS1,MAPK11,RANGAP1,PMM1,PPARA,SBF1,MAPK12,SNORD13P1,MIR6821,LINC01315,MIR6889,KLHDC7B-DT,LINC01639,SCUBE1-AS2,LRRC37A14P,RN7SKP252,RN7SKP80,WNT7B,TCF20,ST13,UPK3A,SREBF2,TEF,RNU6-379P,RNU6-476P,RNU6-1161P,RNU6ATAC22P,RNU6-375P,RNU6-513P,RNU6-409P,RNU6-495P,SGSM3-AS1,FAM136EP,EFCAB6-DT,SREBF2-AS1,TBC1D22A-DT,ZBED4,SCO2,CELSR1,RBX1,PPP6R2,NUP50,TOB2,PACSIN2,SLC25A17,PKDREJ,GRAMD4,TTLL12,ZC3H7B,ATXN10,KIAA0930,TNRC6B,HMGN2P10,ARHGAP8,BRD1,TTLL1,HMGN2P9,SAMM50,SULT4A1,TBC1D22A,TAFA5,RIBC2,PLXNB2,MLC1,MAPK8IP2
Controls
No Control Data Available
No Animal Model Data Available