21q11.2-q21.3CNV Type: Deletion
Largest CNV size: 13336331 bp
Statistics Box:
Number of Reports: 2
Number of Reports: 2
Summary Information
Deletion of unknown inheritance that was identified in a female patient with global developmental delay and a family history of neuropsychiatric disorders (Girirajan et al., 2012)
Additional Locus Information
References
Major Reports
Title
Author, Year
Report Class
CNV Type
An evidence-based approach to establish the functional and clinical significance of copy number variants in intellectual and developmental disabili...
Deletion
Phenotypic heterogeneity of genomic disorders and rare copy-number variants.
Deletion
Minor Reports
Title
Author, Year
Report Class
CNV Type
No Minor Reports
Cases
Cohort ID
Author, Year
Descripton
Cohort Size
Diagnosis
Age
Gender
CNV Size
Deletion
Duplication
Total CNV's
girirajan_12_ASD/DD/ID_discovery_cases
Samples from affected children submitted to Signature Genomic Laboratories from 2008-2010.
32587
Developmental delay with or without congenital malformations
13336331
1
0
1
kaminsky_11_DD/ID/ASD_discovery_cases
Cases from the International Standards for Cytogenomic Arrays (ISCA) consortium
15749
Unexplained developmental delay, intellectual disability, dysmorphic features, multiple congenital anomalies, autism spectrum disorders, or clinical features suggestive of a chromosomal syndrome
NA
NA
16062863
1
0
1
Controls
Cohort ID
Author, Year
Descripton
Cohort Size
Diagnosis
Age
Gender
CNV Size
Deletion
Duplication
Total CNV's
girirajan_12_ASD/DD/ID_discovery_controls
Persons found to have no overt neurological disorders during screening for other studies
8329
Control
13336331
NA
NA
NA
kaminsky_11_DD/ID/ASD_discovery_controls
Controls from the International Standards for Cytogenomic Arrays (ISCA) consortium
10118
Controls
NA
NA
NA
NA
NA
NA
Cases
Cohort ID
Geographical Ancestry
Discovery Method
Platform
Algorithm
Software
Validation Method
girirajan_12_ASD/DD/ID_discovery_cases
aCGH
BACs aCGH, SignatureChipOS
FISH, aCGH, or confirmation by inheritance
kaminsky_11_DD/ID/ASD_discovery_cases
NA
aCGH
Agilent 44K, Agilent 105K
Feature Extraction, DNA Analytics
FISH, qPCR, MLPA, aCGH, standard G-banded chromosome analysis
Controls
Cohort ID
Geographical Ancestry
Discovery Method
Platform
Algorithm
Software
Validation Method
girirajan_12_ASD/DD/ID_discovery_controls
aCGH
BACs ACGH (SignatureChipoWG) or oligoarray (SignatureChipOS)
kaminsky_11_DD/ID/ASD_discovery_controls
NA
aCGH
Agilent 44K, Agilent 105K
Feature Extraction, DNA Analytics
Cases
Patient ID
Author, Year
Age
Gender
Primary Diagnosis
Clinical Profile
Cognitive Profile
CNV Start
CNV End
CNV Size
Genome Build
Type Method
Validation
girirajan_12_ASD/DD/ID_discovery_cases-case66870
11 mos.
F
Developmental delay
Global developmental delay. Mixed low and high tone. Staring/jerking spells when excited. Dysmorphic features: low-set ears, broad nasal bridge, high palate, hypertelorism. Congential anomalies: sacral dimple. Other features: early teeth eruption. Growth parameters: height 3rd-10th %ile, OFC -2.2 SD. Family history: mother and brother have bipolar disorder; brother also has ADHD.
Global developmental delay
14111908
27448241
13336334
GRCh38
Deletion
Yes
kaminsky_11_DD/ID/ASD_discovery_cases-ISCA00001629
NA
NA
Developmental delay/intellectual disability/ASD
Clinical profile NA
Cognitive profile NA
13194345
29257208
16062864
GRCh38
Deletion
Yes
Controls
No Control Data Available
Cases
Patient ID
Validation Description
Primary Disorder Inheritence
Inheritence
Family Profile
Disease Segregation
Gene Content
Altered Gene Expression
girirajan_12_ASD/DD/ID_discovery_cases-case66870
FISH, aCGH, or confirmation by inheritance
Unknown
Unknown
Unknown
ERLEC1P1,HSPA13,POLR2CP1,GAPDHP16,RBMX2P1,CYCSP42,RNU6-1326P,RNU6-426P,VDAC2P1,RPS26P5,SNORD74B,MIR99A,MIRLET7C,MIR125B2,RNU1-98P,NEK4P1,RNU6-113P,RPL39P40,RN7SL163P,BTF3L4P1,RPL37P3,MIR548X,SLC6A6P1,RNU1-139P,RPL37P4,C1QBPP1,LINC01683,LINC02573,RNU6-772P,RN7SKP147,FDPSP6,KRT18P2,RPS3AP1,PPIAP1,RNU4-45P,MAPK6P2,MIR6130,ZNF299P,RNU2-55P,EEF1A1P1,TUBAP,RN7SKP236,RNA5SP489,RPL13AP7,MIR155HG,MIR155,LINC00515,RNGTTP1,FDX1P2,LLPHP2,RNU6-123P,RNU6-926P,MIR4759,GPX1P2,EIF4A1P1,RPL10P1,RBM11,SAMSN1-AS1,LINC02246,NRIP1,RAD23BP3,RBPMSLP,LINC01549,BTG3,BTG3-AS1,C21orf91-OT1,C21orf91,CHODL-AS1,PPIAP22,LINC00320,LINC00317,LINC00308,MSANTD2P1,D21S2088E,LINC01689,MRPL39,ATP5PF,GABPA,ADAMTS1,ADAMTS5,LIPI,ABCC13,SAMSN1,USP25,MIR99AHG,CXADR,CHODL,TMPRSS15,MIR548XHG,NCAM2,LINC01425,LINC01684,LINC01692,LINC00158,JAM2,APP,CYYR1-AS1,CYYR1,LINC01687
kaminsky_11_DD/ID/ASD_discovery_cases-ISCA00001629
FISH, qPCR, MLPA, aCGH, or standard G-banded chromosome analysis
Unknown
Unknown
Unknown
FGF7P2,MIR3156-3,VN1R8P,SNX19P1,OR4K11P,OR4K12P,RNU6-286P,MIR3118-1,GRAMD4P1,CXADRP1,MIR8069-2,TERF1P1,FAM207CP,GXYLT1P2,CNN2P7,ZNF114P1,SNX18P13,RHOT1P2,RNU6-954P,NF1P3,FRG2MP,ANKRD20A18P,RNA5SP488,ERLEC1P1,HSPA13,POLR2CP1,GAPDHP16,RBMX2P1,CYCSP42,RNU6-1326P,RNU6-426P,VDAC2P1,RPS26P5,SNORD74B,MIR99A,MIRLET7C,MIR125B2,RNU1-98P,NEK4P1,RNU6-113P,RPL39P40,RN7SL163P,BTF3L4P1,RPL37P3,MIR548X,SLC6A6P1,RNU1-139P,RPL37P4,C1QBPP1,LINC01683,LINC02573,RNU6-772P,RN7SKP147,FDPSP6,KRT18P2,RPS3AP1,PPIAP1,RNU4-45P,MAPK6P2,MIR6130,ZNF299P,RNU2-55P,EEF1A1P1,TUBAP,RN7SKP236,RNA5SP489,RPL13AP7,MIR155HG,MIR155,LINC00515,RNGTTP1,FDX1P2,LLPHP2,RNU6-123P,RNU6-926P,MIR4759,GPX1P2,EIF4A1P1,RPL10P1,NCSTNP1,LINC00161,HSPD1P7,THUMPD1P1,RPL23P2,RPL12P9,GAPDHP14,ANKRD30BP1,GTF2IP2,LINC01674,CYP4F29P,ANKRD20A11P,PPP6R2P1,RBM11,SAMSN1-AS1,LINC02246,NRIP1,RAD23BP3,RBPMSLP,LINC01549,BTG3,BTG3-AS1,C21orf91-OT1,C21orf91,CHODL-AS1,PPIAP22,LINC00320,LINC00317,LINC00308,MSANTD2P1,D21S2088E,LINC01689,MRPL39,ATP5PF,GABPA,ADAMTS1,ADAMTS5,LINC01673,LINC00113,LINC00314,N6AMT1,RWDD2B,USP16,CCT8,FEM1AP1,LIPI,ABCC13,SAMSN1,USP25,MIR99AHG,CXADR,CHODL,TMPRSS15,MIR548XHG,NCAM2,LINC01425,LINC01684,LINC01692,LINC00158,JAM2,APP,CYYR1-AS1,CYYR1,LINC01697,LINC01695,LTN1,MAP3K7CL,LINC00189,POTED,LINC01687,BACH1
Controls
No Control Data Available
No Animal Model Data Available