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20p12.3CNV Type: Deletion-Duplication


Largest CNV size: 1472685 bp

Statistics Box:
Number of Reports: 23



Summary Information

Summary statement in development

Additional Locus Information

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USCS Symbol             NCBI Symbol

Decipher

            Decipher Symbol

References

Major Reports

Title
Author, Year
Report Class
CNV Type
Novel submicroscopic chromosomal abnormalities detected in autism spectrum disorder.
Deletion
Functional impact of global rare copy number variation in autism spectrum disorders.
Deletion
An evidence-based approach to establish the functional and clinical significance of copy number variants in intellectual and developmental disabili...
Deletion-Duplication
Sporadic autism exomes reveal a highly interconnected protein network of de novo mutations.
Duplication
Refinement and discovery of new hotspots of copy-number variation associated with autism spectrum disorder.
Deletion-Duplication
Excess of rare, inherited truncating mutations in autism.
Deletion-Duplication
Paternally inherited cis-regulatory structural variants are associated with autism.
Deletion

Minor Reports

Title
Author, Year
Report Class
CNV Type
Rare structural variation of synapse and neurotransmission genes in autism.
Deletion
Multiple recurrent de novo CNVs, including duplications of the 7q11.23 Williams syndrome region, are strongly associated with autism.
Deletion-Duplication
Rare de novo and transmitted copy-number variation in autistic spectrum disorders.
Duplication
Relative burden of large CNVs on a range of neurodevelopmental phenotypes.
Duplication
A discovery resource of rare copy number variations in individuals with autism spectrum disorder.
Deletion
Transmission disequilibrium of small CNVs in simplex autism.
Duplication
Identification of small exonic CNV from whole-exome sequence data and application to autism spectrum disorder.
Deletion
Copy number variation in Han Chinese individuals with autism spectrum disorder.
Duplication
Performance of case-control rare copy number variation annotation in classification of autism.
Deletion-Duplication
The landscape of copy number variations in Finnish families with autism spectrum disorders.
Deletion
Genome-wide analysis of copy number variations identifies PARK2 as a candidate gene for autism spectrum disorder.
Duplication
Rare Inherited and De Novo CNVs Reveal Complex Contributions to ASD Risk in Multiplex Families.
Deletion
YY1 Haploinsufficiency Causes an Intellectual Disability Syndrome Featuring Transcriptional and Chromatin Dysfunction.
Duplication
NA
Deletion
NA
Deletion
Genomic insights from a deeply phenotyped highly consanguineous neurodevelopmental disorders cohort
Deletion

Cases

Cohort ID
Author, Year
Descripton
Cohort Size
Diagnosis
Age
Gender
CNV Size
Deletion
Duplication
Total CNV's
 akter_23_ASD/ADHD/DD/ID_discovery_cases
  NA NA
 Bangladeshi NDD probands who underwent chromosomal microarray testing to identify CNVs from 2017 to 2020.
 212
 Individuals presented with autism spectrum disorder (ASD), ADHD, developmental delay (DD), intellectual disability (ID), and/or epilepsy/seizures, among other neurodevelopmental phenotypes; 95 individuals were diagnosed with ASD using DSM-V, ADOS, or ADOS-2.
 NA
 68.40% Male
 476015
 1
 0
 1
 akter_24_ASD/ADHD/DD/ID_discovery_cases
 Individuals clinically diagnosed with one or more neurodevelopmental disorders (NDDs) by neurologists from July 2019 to December 2022 from multiple tertiary hospitals across Bangladesh.
 576
 Cases presented with one or more neurodevelopmental disorders; specific diagnoses of ASD, ADHD, and intellectual disability were made by clinical specialists and complemented by formal assessments, such as ADOS-2 and DSM-5, where appropriate.
 98.26% under 18 years of age
 67.71% Male
 476016
 1
 0
 1
 brandler_18_ASD_discovery_cases
 Affected individuals from the Relating Genes with Adolescent and Child Health (REACH) cohort (362 cases from 311 families; 54 multiplex, 243 simplex) and the Simons Simplex 1 (SSC1) cohort (518 cases from simplex quad families)
 880
 REACH cohort: 285 cases diagnosed with ASD, 43 cases diagnosed with PDD-NOS, 10 cases diagnosed with ADHD, and 24 cases presenting with speech delay, epilepsy, anxiety, or other related developmental disorders that were classified as cases for bioinformatics analyses; Simons Simplex Collection 1 (SSC1) cohort: all 518 cases were diagnosed with ASD
 N/A
 N/A
 480550
 1
 0
 1
 christian_08_ASD_discovery_cases
 Subset of unrelated AGRE subjects (362 from multiplex families, 35 from simplex families)
 397
 ASD
 
 58.4% Male
 480000
 1
 0
 1
 engchuan_15_ASD_discovery_cases
 Samples from the Autism Genome Project (AGP)
 1892
 Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
 N/A
 85.78% Male
 516892
 1
 3
 4
 gabriele_17_DD/ID_discovery_cases
 Individuals with deletions encompassing the YY1 gene identified within the DECIPHER database and an in-house database containing data from over 8,000 individuals with intellectual disability
 13
 Recurrent phenotypes of individuals with YY1 deletions included developmental delay, intellectual disability, intrauterine growth retardation, feeding problems, and dysmorphic features
 N/A
 N/A
 473979
 0
 1
 1
 gai_11_ASD_discovery_cases
 Discovery case samples derived from AGRE set 4 (most recent patient recruitment)
 631
 Idiopathic autism; cases designated as 'spectrum' and 'not quite autism' excluded, as were cases with known genetic syndromes or other non-idiopathic causes
 
 
 479542
 4
 0
 4
 gazzellone_14_ASD_discovery_cases
 ASD-affected individuals referred to the Children Development and Behavior Research Center (CDRBC) at Harbin Medical University, China, between January 2007 and June 2011.
 104
 Diagnosis of ASD made using Autism Behavior Checklist (ABC) and Childhood Autism Rating Scale (CARS)
 Mean age at enrollment, 4.31 1.80 yrs.
 87.5% Male
 62197
 0
 1
 1
 girirajan_11_ASD_discovery_cases
 ASD cases with sporadic autism from the Simons Simplex Collection (SSC)
 336
 Diagnosis of ASD based on meeting criteria on ADOS, ADI-R, and expert clinical judgment. 246 cases with no intellectual disability, 90 cases with intellectual disability. Exclusion criteria: significant hearing, vision, or motor problems; significant birth complications; a diagnosis of ASD-related disorders, such as Fragile X; or having a relative (up to 3rd degree) with ASD or sibling showing ASD-related symptoms.
 
 
 711387
 0
 1
 1
 girirajan_13a_ASD_discovery_cases
 1979 simplex cases from the Simons Simplex Collection (SSC), 579 multiplex cases from AGRE.
 2588
 Diagnosis of ASD based on meeting criteria on the Autism Diagnostic Observation Schedule (ADOS) and on the Autism Diagnostic Interview, Revised (ADI-R)
 NA
 NA
 1458124
 2
 4
 6
 kaminsky_11_DD/ID/ASD_discovery_cases
 Cases from the International Standards for Cytogenomic Arrays (ISCA) consortium
 15749
 Unexplained developmental delay, intellectual disability, dysmorphic features, multiple congenital anomalies, autism spectrum disorders, or clinical features suggestive of a chromosomal syndrome
 NA
 NA
 2240939
 2
 1
 3
 kanduri_15_ASD_discovery_cases
 Autistic cases from an initial sample of 83 Finnish families comprising 257 family members following quality control
 80
 Diagnosis of ASD based on DSM-IV, 4th edition, or ICD-10 criteria; patients screened based on Childhood Autism Rating Scale (CARS), Asperger Syndrome Screening Questionnaire, and Asperger's Syndrome Diagnostic Interview.
 N/A
 N/A
 38264
 1
 0
 1
 krumm_13_ASD_discovery_cases
 Probands from quad families ascertained as part of the Simons Simplex Collection (SSC); CNVs detected using data from four previously published exome sequencing studies (O'Roak et al., 2011; Iossifov et al., 2012; O'Roak et al., 2012; Sanders et al., 2012)
 411
 Diagnosis of ASD. Social Responsiveness Scale (SRS) used as a quantitative measure of social deficits
 N/A
 81.265% Male
 126723
 0
 1
 1
 krumm_15_ASD_discovery_cases
 Probands from the Simons Simplex Collection
 2377
 Diagnosis of ASD
 N/A
 N/A
 487858
 1
 5
 6
 leppa_16_ASD_discovery_cases
 Children affected with ASD from 1,464 families from the Autism Genetic Resource Exchange (AGRE)
 1764
 Diagnosis according to ADOS and ADI-R
 N/A
 N/A
 500000
 1
 0
 1
 levy_11_ASD_discovery_cases
 Autistic probands from 887 families from the Simons Simplex Collection (SSC)
 858
 ASD
 
 87.06% Male
 770231
 0
 1
 1
 monteiro_19_ASD_discovery_cases
  NA NA
 Patients from an aCGH database from the Department of Genetics of the Faculty of Medicine, University of Porto, Portugal, over a 5-year-period (2012-2017).
 253
 Diagnosis of ASD confirmed by ADOS and ADI-R and based on DSM-IV-TR
 N/A
 76.68% Male
 1064000
 1
 0
 1
 o'roak_12_ASD_discovery_cases
 Autistic probands from the Simons Simplex Collection (SSC), from an initial cohort of 189 autism families
 122
 ASD/autism
 NA
 NA
 1564343
 0
 1
 1
 pinto_10_ASD_discovery_cases
 Autism Genome Project (AGP) consortium patient cohort from families with at least two ASD individuals
 996
 ASD (ADI-R and ADOS): strict, broad, or spectrum ASD
 
 
 30200
 1
 0
 1
 poultney_13_ASD_discovery_cases
 ASD cases of European ancestry from AGRE retained after filtering (original cohort size of 432 cases)
 299
 Cases diagnosed with ASD
 N/A
 79.86% Male (before filtering)
 361255
 1
 0
 1
 prasad_12_ASD_discovery_cases
 Unrelated ASD cases recruited from three Canadian sites (Hospital for Sick Children, McMaster University, and Memorial University of Newfoundland); the majority of cases had been previously genotyped with results published in Marshall et al., 2008 and Pinto et al., 2010. 20 cases from initial cohort of 696 were excluded from further analysis (due to CNVs > 5 Mb).
 676
 Diagnosis of ASD based on meeting criteria on ADI-R and/or ADOS
 NA
 82.84% Male
 23402
 2
 0
 2
 sanders_11_ASD_discovery_cases
 Autistic probands from the Simons Simplex Collection (SSC). 872 probands in quartet families, 272 probands in trios.
 1124
 ASD diagnosis: 89.5% autism; 8.5% PDD-NOS, 2% Asperger syndrome. Mean full-scale IQ 85.1 1.5 (mean verbal IQ, 81.9 1.7; mean non-verbal IQ, 88.4 1.4)
 Mean, 9.1 yrs.
 86.1% Male
 1472685
 6
 7
 13
 yin_16_ASD_discovery_cases
 Discovery cohort of ASD cases recruited from the Department of Psychiatry of National Taiwan University Hospital (NTUH), Chang Gung Memorial Hospital (CGMH), Taoyuan, and Taoyuan Mental Hospital (TMH), Taiwan.
 335
 Cases diagnosed with autistic disorder according to DSM-IV and confirmed by using the Chinese version of ADI-R. Cases' autistic behaviors assessed by Social Responsiveness Scale (SRS), and cognitive functions assessed by the Weschler Intelligence Scale for Children-Third Edition (WISC-III) and the Wisconsin Card Sorting Test (WCST).
 Mean, 9.39 4.04 yrs.
 89.3% Male
 57227
 0
 1
 1

Controls

Cohort ID
Author, Year
Descripton
Cohort Size
Diagnosis
Age
Gender
CNV Size
Deletion
Duplication
Total CNV's
 christian_08_ASD_discovery_controls
 Control subjects from NIMH Genetics Initiative Control sample set, characterized for Axis I disorders
 372
 Controls
 
 
 480000
 0
 0
 0
 engchuan_15_ASD_discovery_controls
 Platform-matched controls from three large studies: SAGE (Study of Addiction Genetics and Environment), Ontario Colorectal Cancer study, and HABC (Health Aging and Body Composition)
 2342
 Controls; subjects had no previous psychiatric history
 N/A
 46.67% Male
 479541
 1
 2
 3
 girirajan_11_ASD_discovery_controls
 Control individuals ascertained by NIMH Genetics Initiative. DNA samples from these individuals were obtained from the Rutgers Univ. Cell & DNA Repository.
 337
 Control. Individuals screened specifically for eight mental health disorders.
 
 
 711387
 0
 0
 0
 girirajan_13a_ASD_discovery_controls2
 Controls characterized through the Wellcome Trust Case-Control Consortium (WTCCC) for smaller hotspot regions and candidate-gene events
 2090
 Control
 NA
 NA
 N/A
 0
 2
 2
 kaminsky_11_DD/ID/ASD_discovery_controls
 Controls from the International Standards for Cytogenomic Arrays (ISCA) consortium
 10118
 Controls
 NA
 NA
 NA
 NA
 NA
 NA
 kanduri_15_ASD_discovery_controls
 Unrelated Finnish samples from the cohort of Health 2000 survey from an initial sample of 288 individuals following quality control
 269
 Controls screened for DSM-IV mental disorders using the Composite International Diagnostic Interview and psychotic disorders using the research version of the Structured Clinical Interview for DSM-IV
 N/A
 N/A
 0
 0
 0
 0
 krumm_13_ASD_discovery_controls
 Unaffected siblings of ASD probands from quad families ascertained as part of the Simons Simplex Collection (SSC); CNVs detected using data from four previously published exome sequencing studies (O'Roak et al., 2011; Iossifov et al., 2012; O'Roak et al., 2012; Sanders et al., 2012)
 411
 Control (unaffected siblings of ASD probands). Social Responsiveness Scale (SRS) used as a quantitative measure of social deficits
 N/A
 46.47% Male
 126723
 0
 1
 1
 krumm_15_ASD_discovery_controls
 Unaffected siblings from quad families from the Simons Simplex Collection
 1786
 Control
 N/A
 N/A
 266779
 0
 4
 4
 levy_11_ASD_discovery_controls
 Unaffected siblings of autistic probands from 887 families from the Simons Simplex Collection (SSC)
 863
 Control
 
 47.97% Male
 770231
 0
 1
 1
 poultney_13_ASD_discovery_controls
 Controls matched for European ancestry from NIMH and CEPH retained after filtering (original cohort size of 379 controls)
 260
 Control
 N/A
 47.49% Male (before filtering)
 0
 0
 0
 0
 prasad_12_ASD_discovery_controls
 PDx controls [1000 DNA samples from reportedly healthy donors (50.2% male) from BioServe (Beltsville, MD)] and 4139 in-house controls previously reported in Krawcak et al. 2006, Stewart et al. 2009, and Bierut et al. 2010. CNVs identified in controls were used to define rare ASD-specific CNVs.
 5139
 Control
 NA
 NA (PDx controls 50.2% male)
 23402
 0
 0
 0
 sanders_11_ASD_discovery_controls
 Matched siblings of autistic probands from the Simons Simplex Collection (SSC).
 872
 Controls
 Mean, 10.0 yrs.
 
 767433
 3
 4
 7
 yin_16_ASD_discovery_controls
 Individuals from the Han Chinese Cell and Genome Bank (HCCGB) in Taiwan
 1093
 Controls
 Mean, 68.07 10.12 yrs.
 48.0% Male
 57227
 0
 0
 0

Cases

Cohort ID
Geographical Ancestry
Discovery Method
Platform
Algorithm
Software
Validation Method
 akter_23_ASD/ADHD/DD/ID_discovery_cases
  Bangladesh
 CMA
  Illumina Global Screening Array-24 BeadChip
 CNVPartition
 Illumina Genomestudio
 None
 akter_24_ASD/ADHD/DD/ID_discovery_cases
  Bangladesh
 CMA
  Illumina Global Screening Array-24+ v3.0
 
 Illumina CNVPartition 3.2.1 plug-in of GenomeStudio
 
 brandler_18_ASD_discovery_cases
  N/A
 WGS
  Illumina HiSeq X10 or HiSeq 2500
 ForestSV, Lumpy, Manta, Mobster, SV2
 
 PCR, array SNP
 christian_08_ASD_discovery_cases
  235 White/Not Hispanic, 28 White/Hispanic, 9 Asians, 4 Blacks, 14 Mixed/Not Hispanic, 7 Mixed/Hispanic, 98 Unknown
 aCGH
  RPCI 19K BAC microarray
 
 
 FISH, microsatellite, qPCR
 engchuan_15_ASD_discovery_cases
  Caucasian
 Solid phase hybridization
  Illumina 1M
 
 
 None
 gabriele_17_DD/ID_discovery_cases
  N/A
 aCGH, array SNP
  Agilent 44K, Agilent 60K, Agilent 400K, Affymetrix 250K NspI
 
 
 None
 gai_11_ASD_discovery_cases
  European
 Solid phase hybridization
  Illumina Infinium II HumanHap550 BeadChip
 
 BeadStudio 3.0
 None
 gazzellone_14_ASD_discovery_cases
  Han Chinese
 Array SNP
  Affymetrix CytoScan HD
 ChAS, iPattern, Nexus, Partek
 
 None
 girirajan_11_ASD_discovery_cases
 
 aCGH
  Custom microarray targeting 107 genomic hotspot regions (Roche NimbleGen Hotspot v1.0 array; 12 x 135K)
 HMM
 
 None
 girirajan_13a_ASD_discovery_cases
  NA
 aCGH
  Custom microarray with a high density of probes targeted to 1,367 regions with a susceptible genomic architecture
 ADM-2
 Agilent Genomic Workbench
 aCGH (NimbleGen 135K array)
 kaminsky_11_DD/ID/ASD_discovery_cases
  NA
 aCGH
  Agilent 44K, Agilent 105K
 
 Feature Extraction, DNA Analytics
 FISH, qPCR, MLPA, aCGH, standard G-banded chromosome analysis
 kanduri_15_ASD_discovery_cases
  Finnish
 Solid phase hybridization
  Illumina Human OmniExpress-12v1.0 BeadChip
 QuantiSNP, PennCNV
 Illumina BeadStudio
 None
 krumm_13_ASD_discovery_cases
  N/A
 WES
  Whole exome sequencing platforms used in four recent publications (O'Roak et al., 2011; Sanders et al., 2012; O'Roak et al., 2012, and Iossifov et al., 2012)
 DNACopy, CGHCall
 CoNIFER
 None
 krumm_15_ASD_discovery_cases
  N/A
 WES
 
 CoNIFER, XHMM
 
 Solid phase hybridization (Illumina 1M, 1 M Duo, or Omni 2.5)
 leppa_16_ASD_discovery_cases
  N/A
 Solid phase hybridization
  Illumina 550v1 and 550v3, Omni-1.0-B and -H, Omni 2.5
 PennCNV, QuantiSNP, GNOSIS
 GenomeStudio, CNVision
 None
 levy_11_ASD_discovery_cases
 
 aCGH
  NimbleGen HD2
 HMM
 
 
 monteiro_19_ASD_discovery_cases
  Portuguese
 aCGH
  Agilent SurePrint G3 4x180K
 
 Agilent Cytogenomics
 None
 o'roak_12_ASD_discovery_cases
  NA
 WES
  NimbleGen EZ Exome V2.0, Illumina GAIIx or HiSeq2000
 HMM
 mrsFAST aligner
 aCGH, Sanger sequencing
 pinto_10_ASD_discovery_cases
  European
 Solid phase hybridization
  Illumina Infinium 1M SNP microarray
 QuantiSNP, iPattern
 
 qPCR, long-range PCR (LR-PCR), MLPA, FISH, aCGH (Agilent 1M), array SNP (Affymetrix 500K)
 poultney_13_ASD_discovery_cases
  European
 WES
  Agilent SureSelect Human All Exon v.2
 XHMM
 
 None
 prasad_12_ASD_discovery_cases
  Canada
 aCGH
  Agilent 1M
 ADM-2, DNAcopy (R Bioconductor)
 DNA Analytics v4.0.85 (Agilent), DNAcopy
 None
 sanders_11_ASD_discovery_cases
  White non-Hispanic, 74.5%; mixed, 9.3%, Asian, 4.3%, White Hispanic, 4.0%, African-American, 3.8%; other, 4.2&
 Solid phase hybridization
  Illumina 1M v1, Illumina 1M v3
 PennCNV, QuantiSNP, GNOSIS
 
 
 yin_16_ASD_discovery_cases
  Han Chinese
 Array SNP
  Affymetrix 6.0
 
 Affymetrix Genotyping Console v.4.1
 None

Controls

Cohort ID
Geographical Ancestry
Discovery Method
Platform
Algorithm
Software
Validation Method
  christian_08_ASD_discovery_controls
  262 Caucasians, 100 African-Americans
  aCGH
  RPCI 19K BAC microarray
 
 
 
  engchuan_15_ASD_discovery_controls
  Caucasian
  Solid phase hybridization
  Illumina 1M
 
 
  None
  girirajan_11_ASD_discovery_controls
 
  aCGH
  Custom microarray targeting 107 genomic hotspot regions (Roche NimbleGen Hotspot v1.0 array; 12 x 135K)
  HMM
 
 
  girirajan_13a_ASD_discovery_controls2
  NA
  Solid phase hybridization
  Illumina 1.2M SNP microarray
 
 
  None
  kaminsky_11_DD/ID/ASD_discovery_controls
  NA
  aCGH
  Agilent 44K, Agilent 105K
 
  Feature Extraction, DNA Analytics
 
  kanduri_15_ASD_discovery_controls
  Finnish
  Solid phase hybridization
  Illumina Infinium HD Human610-Quad BeadChip
  QuantiSNP, PennCNV
  Illumina BeadStudio
  None
  krumm_13_ASD_discovery_controls
  N/A
  WES
  Whole exome sequencing platforms used in four recent publications (O'Roak et al., 2011; Sanders et al., 2012; O'Roak et al., 2012, and Iossifov et al., 2012)
  DNACopy, CGHCall
  CoNIFER
  Solid phase hybridization (Illumina 1M), aCGH (Agilent SurePrint G3 4x180K), or confirmed by manual inspection
  krumm_15_ASD_discovery_controls
  N/A
  WES
 
  CoNIFER, XHMM
 
  Solid phase hybridization (Illumina 1M, 1 M Duo, or Omni 2.5)
  levy_11_ASD_discovery_controls
 
  aCGH
  NimbleGen HD2
  HMM
 
 
  poultney_13_ASD_discovery_controls
  European
  WES
  Agilent SureSelect Human All Exon v.2
  XHMM
 
 
  prasad_12_ASD_discovery_controls
  NA
  aCGH
  Agilent 1M
  ADM-2, DNAcopy (R Bioconductor)
  DNA Analytics v4.0.85 (Agilent), DNAcopy
 
  sanders_11_ASD_discovery_controls
 
  Solid phase hybridization
  Illumina 1M v1 or Illumina 1M v3
  PennCNV, QuantiSNP, GNOSIS
 
 
  yin_16_ASD_discovery_controls
  Han Chinese
  Array SNP
  Affymetrix 6.0
 
  Affymetrix Genotyping Console v.4.1
  None

Cases

Patient ID
Author, Year
Age
Gender
Primary Diagnosis
Clinical Profile
Cognitive Profile
CNV Start
CNV End
CNV Size
Genome Build
Type Method
Validation
  akter_23_ASD/ADHD/DD/ID_discovery_cases-case20
  NA NA
 3 yrs.
 F
 ASD and developmental delay
 Autism, speech delay, temper tantrums, restlessness. Growth parameters: height 0.97 m, weight 20 kg, head circumference 48 cm. Family history: no data on familial consanguinity.
 
 8117650
 8593664
  476015
 GRCh38
 Deletion
 No
  akter_24_ASD/ADHD/DD/ID_discovery_cases-case349
 3 yrs.
 F
 ASD and developmental delay
 Developmental milestones: delayed speech and language development. Behavioral/psychiatric evaluation: autism (HP:0000717), atypical behavior (HP:0000708). Growth parameters: head circumference 48 cm, height 97 cm, weight 20 kg.
 
 8117649
 8593664
  476016
 GRCh38
 Deletion
 No
  brandler_18_ASD_discovery_cases-caseSSC10623
 N/A
 M
 ASD
 Case from SSC_phase1 cohort
 
 8114304
 8594853
  480550
 GRCh38
 Deletion
 Yes
  christian_08_ASD_discovery_cases-AU1368302
 NA
 F
 ASD
 NA
 NA
 8063395
 8546868
  483474
 GRCh38
 Deletion
 Yes
  engchuan_15_ASD_discovery_cases-case14058_1000
 N/A
 N/A
 ASD
 Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
 
 5322007
 5838899
  516893
 GRCh38
 Duplication
 No
  engchuan_15_ASD_discovery_cases-case14134_2320
 N/A
 N/A
 ASD
 Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
 
 9034227
 9122240
  88014
 GRCh38
 Duplication
 No
  engchuan_15_ASD_discovery_cases-case14259_3820
 N/A
 N/A
 ASD
 Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
 
 5809728
 5853042
  43315
 GRCh38
 Duplication
 No
  engchuan_15_ASD_discovery_cases-case8612_201
 N/A
 N/A
 ASD
 Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
 
 8722605
 8790833
  68229
 GRCh38
 Deletion
 No
  gabriele_17_DD/ID_discovery_cases-case272547
 N/A
 N/A
 Developmental delay
 Very active behavior, poor concentration, strabismus, feeding problems, long and slim hands and feet, deviated toes, constipation, dysmorphic features
 Mild developmental delay
 7306747
 7780725
  473979
 GRCh38
 Duplication
 
  gai_11_ASD_discovery_cases-AU1070301
 
 
 Autism
 
 
 8922362
 8973897
  51536
 Unknown
 Deletion
 No
  gai_11_ASD_discovery_cases-AU1070302
 
 
 Autism
 
 
 8922362
 8973897
  51536
 Unknown
 Deletion
 No
  gai_11_ASD_discovery_cases-AU1368302
 
 
 Autism
 
 
 8115483
 8595024
  479542
 GRCh38
 Deletion
 No
  gai_11_ASD_discovery_cases-AU1368303
 
 
 Autism
 
 
 8115483
 8595024
  479542
 GRCh38
 Deletion
 No
  gazzellone_14_ASD_discovery_cases-case628-3
 N/A
 M
 ASD
 ASD; no other clinical information provided
 N/A
 8933297
 8995494
  62198
 GRCh38
 Duplication
 No
  girirajan_11_ASD_discovery_cases-Si259
 12
 M
 Autism
 ADOS score: 9. Vineland composite score: 79.
 No mental retardation/intellectual disability. Full-scale IQ, 132; Verbal IQ, 119; Non-verbal IQ, 137.
 7584044
 8295431
  711388
 GRCh38
 Duplication
 No
  girirajan_13a_ASD_discovery_cases-11013.p1
 N/A
 N/A
 ASD
 Diagnosis of ASD based on meeting criteria on the Autism Diagnostic Observation Schedule (ADOS) and on the Autism Diagnostic Interview, Revised (ADI-R)
 N/A
 7585432
 8342587
  757156
 GRCh38
 Duplication
 Yes
  girirajan_13a_ASD_discovery_cases-13085.p1
 N/A
 N/A
 ASD
 Diagnosis of ASD based on meeting criteria on the Autism Diagnostic Observation Schedule (ADOS) and on the Autism Diagnostic Interview, Revised (ADI-R)
 N/A
 7136890
 8595014
  1458125
 GRCh38
 Duplication
 Yes
  girirajan_13a_ASD_discovery_cases-13817.p1
 N/A
 N/A
 ASD
 Diagnosis of ASD based on meeting criteria on the Autism Diagnostic Observation Schedule (ADOS) and on the Autism Diagnostic Interview, Revised (ADI-R)
 N/A
 8114737
 8595014
  480278
 GRCh38
 Deletion
 Yes
  girirajan_13a_ASD_discovery_cases-14249.p1
 N/A
 N/A
 ASD
 Diagnosis of ASD based on meeting criteria on the Autism Diagnostic Observation Schedule (ADOS) and on the Autism Diagnostic Interview, Revised (ADI-R)
 N/A
 8114737
 8595014
  480278
 GRCh38
 Deletion
 Yes
  girirajan_13a_ASD_discovery_cases-AU1887301
 N/A
 N/A
 ASD
 Diagnosis of ASD based on meeting criteria on the Autism Diagnostic Observation Schedule (ADOS) and on the Autism Diagnostic Interview, Revised (ADI-R)
 N/A
 8114737
 8595014
  480278
 GRCh38
 Duplication
 Yes
  girirajan_13a_ASD_discovery_cases-AU2689306
 N/A
 N/A
 ASD
 Diagnosis of ASD based on meeting criteria on the Autism Diagnostic Observation Schedule (ADOS) and on the Autism Diagnostic Interview, Revised (ADI-R)
 N/A
 8114737
 8595014
  480278
 GRCh38
 Duplication
 Yes
  kaminsky_11_DD/ID/ASD_discovery_cases-ISCA00000901
 NA
 NA
 Developmental delay/intellectual disability/ASD
 Clinical profile NA
 Cognitive profile NA
 6336607
 8577546
  2240940
 GRCh38
 Deletion
 Yes
  kaminsky_11_DD/ID/ASD_discovery_cases-ISCA00004560
 NA
 NA
 Developmental delay/intellectual disability/ASD
 Clinical profile NA
 Cognitive profile NA
 7123110
 8577546
  1454437
 GRCh38
 Duplication
 Yes
  kaminsky_11_DD/ID/ASD_discovery_cases-ISCA00005023
 NA
 NA
 Developmental delay/intellectual disability/ASD
 Clinical profile NA
 Cognitive profile NA
 7123110
 8577546
  1454437
 GRCh38
 Deletion
 Yes
  kanduri_15_ASD_discovery_cases-case1921
 N/A
 N/A
 ASD
 Diagnosis of ASD based on DSM-IV, 4th edition, or ICD-10 criteria; patient screened based on Childhood Autism Rating Scale (CARS), Asperger Syndrome Screening Questionnaire, and/or Asperger's Syndrome Diagnostic Interview.
 
 8162278
 8200541
  38264
 Unknown
 Deletion
 No
  krumm_13_ASD_discovery_cases-case11013.p1
 N/A
 M
 ASD
 ASD proband from SSC quad family 11013. SRS score of 90.
 Full-scale IQ (FSIQ) score of 132.
 7883592
 8010315
  126724
 GRCh38
 Duplication
 No (not tested)
  krumm_15_ASD_discovery_cases-case11013.p1
 N/A
 Male
 ASD
 Proband from the Simons Simplex Collection (SSC). Family type: Quad
 
 7883592
 8150371
  266780
 GRCh38
 Duplication
 Yes
  krumm_15_ASD_discovery_cases-case11393.p1
 N/A
 Male
 ASD
 Proband from the Simons Simplex Collection (SSC). Family type: Quad
 
 5547660
 5598821
  51162
 GRCh38
 Duplication
 Yes
  krumm_15_ASD_discovery_cases-case11555.p1
 N/A
 Female
 ASD
 Proband from the Simons Simplex Collection (SSC). Family type: Trio
 
 5302039
 5314371
  12333
 GRCh38
 Duplication
 Yes
  krumm_15_ASD_discovery_cases-case13085.p1
 N/A
 Male
 ASD
 Proband from the Simons Simplex Collection (SSC). Family type: Trio
 
 7883592
 8371450
  487859
 GRCh38
 Duplication
 Yes
  krumm_15_ASD_discovery_cases-case13609.p1
 N/A
 Male
 ASD
 Proband from the Simons Simplex Collection (SSC). Family type: Quad
 
 5547660
 5604412
  56753
 GRCh38
 Duplication
 Yes
  krumm_15_ASD_discovery_cases-case14249.p1
 N/A
 Male
 ASD
 Proband from the Simons Simplex Collection (SSC). Family type: Quad
 
 8132651
 8371450
  238800
 GRCh38
 Deletion
 Yes
  leppa_16_ASD_discovery_cases-AU1368303
 N/A
 M
 ASD
 
 
 8104353
 8601353
  497001
 GRCh38
 Deletion
 No
  levy_11_ASD_discovery_cases-11013.p1
 NA
 M
 ASD
 NA
 NA
 7567088
 8337318
  770231
 GRCh38
 Duplication
 No
  monteiro_19_ASD_discovery_cases_case16
  NA NA
 N/A
 M
 ASD and developmental delay
 Diagnosis of ASD confirmed by ADOS and ADI-R and based on DSM-IV-TR. Developmental milestones: developmental delay. Dysmorphic features: none reported.
 
 7611088
 8675574
  1064487
 GRCh38
 Deletion
 No
  o'roak_12_ASD_discovery_cases-case11013.p1
 NA
 M
 ASD/Autism
 Case also identified with de novo TMPRSS2 missense mutation. No additional clinical info available.
 High IQ. Non verbal IQ, 137
 6778244
 8342587
  1564344
 GRCh38
 Duplication
 Yes
  pinto_10_ASD_discovery_cases-case5046_3
 NA
 M
 Autism
 Below average language (1%ile), no epilepsy, no dysmorphic features
 Unable to complete IQ measure
 8607242
 8637441
  30200
 Unknown
 Deletion
 Yes
  poultney_13_ASD_discovery_cases-case05HI3629A
 N/A
 F
 ASD
 ASD case from AGRE (AGRE ID AU1368302; NDAR ID NDAR_INVFL897HKN)
 
 8010198
 8371452
  361255
 GRCh38
 Deletion
 No
  prasad_12_ASD_discovery_cases-case117486L
 NA
 M
 ASD
 Diagnosis of ASD based on meeting criteria on ADI-R and/or ADOS. Novel CNV
 
 8316576
 8325532
  8957
 Unknown
 Deletion
 No
  prasad_12_ASD_discovery_cases-case60980L
 NA
 M
 ASD
 Diagnosis of ASD based on meeting criteria on ADI-R and/or ADOS. CNV identified by previous SNP microarray study
 
 8607417
 8630818
  23402
 Unknown
 Deletion
 No
  sanders_11_ASD_discovery_cases-11013.p1
 10
 M
 Autism
 NA
 Full-scale IQ, 132; non-verbal IQ, 137; verbal IQ, 119
 7568938
 8336371
  767434
 GRCh38
 Duplication
 No
  sanders_11_ASD_discovery_cases-11031.p1
 13.8
 M
 Aspergers
 NA
 Full-scale IQ, 118; non-verbal IQ, 110; verbal IQ, 128
 5593488
 5631240
  37753
 GRCh38
 Duplication
 No
  sanders_11_ASD_discovery_cases-11393.p1
 8.2
 M
 Autism
 NA
 Full-scale IQ, 28; non-verbal IQ, 37; verbal IQ, 17
 5412507
 5637936
  225430
 GRCh38
 Duplication
 No
  sanders_11_ASD_discovery_cases-11555.p1
 9.1
 F
 Aspergers
 NA
 Full-scale IQ, 95; non-verbal IQ, 98; verbal IQ, 91
 5291064
 5303734
  12671
 GRCh38
 Duplication
 No
  sanders_11_ASD_discovery_cases-11721.p1
 4.8
 M
 ASD
 NA
 Full-scale IQ, 99; non-verbal IQ, 98; verbal IQ, 101
 5790273
 5794605
  4333
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-12202.p1
 11.3
 M
 Autism
 NA
 Full-scale IQ, 115; non-verbal IQ, 106; verbal IQ, 128
 8503460
 8512003
  8544
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-12227.p1
 12.4
 M
 Autism
 NA
 Full-scale IQ, 137; non-verbal IQ, 146; verbal IQ, 106
 7719461
 7723781
  4321
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-12435.p1
 11.2
 M
 Autism
 NA
 Full-scale IQ, 47; non-verbal IQ, 51; verbal IQ, 40
 6748057
 6749142
  1086
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-12476.p1
 8.1
 M
 Autism
 NA
 Full-scale IQ, 91; non-verbal IQ, 100; verbal IQ, 79
 7719461
 7720480
  1020
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-12510.p1
 7.3
 M
 Autism
 NA
 Full-scale IQ, 52; non-verbal IQ, 59; verbal IQ, 47
 5806690
 5853042
  46353
 GRCh38
 Duplication
 No
  sanders_11_ASD_discovery_cases-12757.p1
 5.3
 M
 Autism
 NA
 Full-scale IQ, 57; non-verbal IQ, 62; verbal IQ, 55
 7719461
 7723565
  4105
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-13045.p1
 11.1
 M
 Autism
 NA
 Full-scale IQ, 37; non-verbal IQ, 38; verbal IQ, 35
 5806690
 5853042
  46353
 GRCh38
 Duplication
 No
  sanders_11_ASD_discovery_cases-13085.p1
 14.8
 M
 ASD
 NA
 Full-scale IQ, 82; non-verbal IQ, 78; verbal IQ, 95
 7122339
 8595024
  1472686
 GRCh38
 Duplication
 No
  yin_16_ASD_discovery_cases-case581
 N/A
 N/A
 ASD
 Cases diagnosed with autistic disorder according to DSM-IV and confirmed by using the Chinese version of ADI-R.
 
 8535409
 8592635
  57227
 GRCh38
 Duplication
 No

Controls

Patient ID
Author, Year
Age
Gender
Primary Diagnosis
Clinical Profile
Cognitive Profile
CNV Start
CNV End
CNV Size
Genome Build
Type Method
Validation
  engchuan_15_ASD_discovery_controls-controlB655980_1007875789
  N/A
  N/A
  Control
  No previous psychiatric history
 
  5815138
  5853042
  37905
  GRCh38
  Duplication
  No
  engchuan_15_ASD_discovery_controls-controlHABC_902443_902443
  N/A
  N/A
  Control
  No previous psychiatric history
 
  8115483
  8595024
  479542
  GRCh38
  Duplication
  No
  engchuan_15_ASD_discovery_controls-controlHABC_902469_902469
  N/A
  N/A
  Control
  No previous psychiatric history
 
  5298223
  5416682
  118460
  GRCh38
  Deletion
  No
  girirajan_13a_ASD_discovery_controls2-control42
  N/A
  N/A
  Control
  N/A
  N/A
  N/A
  N/A
  N/A
  NCBI36
  Duplication
  No
  girirajan_13a_ASD_discovery_controls2-control43
  N/A
  N/A
  Control
  N/A
  N/A
  N/A
  N/A
  N/A
  NCBI36
  Duplication
  No
  krumm_13_ASD_discovery_controls-control11013.s1
  N/A
  M
  Control
  Unaffected sibling from SSC quad family 11013. SRS score of 47.
 
  7883592
  8010315
  126724
  GRCh38
  Duplication
  Yes
  krumm_15_ASD_discovery_controls-control11013.s1
  N/A
  Male
  Control
  Unaffected sibling from the Simons Simplex Collection (SSC)
 
  7883592
  8150371
  266780
  GRCh38
  Duplication
  Yes
  krumm_15_ASD_discovery_controls-control11393.s1
  N/A
  Male
  Control
  Unaffected sibling from the Simons Simplex Collection (SSC)
 
  5547660
  5598821
  51162
  GRCh38
  Duplication
  Yes
  krumm_15_ASD_discovery_controls-control13609.s1
  N/A
  Female
  Control
  Unaffected sibling from the Simons Simplex Collection (SSC)
 
  5547660
  5604412
  56753
  GRCh38
  Duplication
  Yes
  krumm_15_ASD_discovery_controls-control13613.s1
  N/A
  Female
  Control
  Unaffected sibling from the Simons Simplex Collection (SSC)
 
  5547660
  5773043
  225384
  GRCh38
  Duplication
  Yes
  levy_11_ASD_discovery_controls-11013.s1
  NA
  M
  Control
  NA
  NA
  7567088
  8337318
  770231
  GRCh38
  Duplication
  No
  sanders_11_ASD_discovery_controls-11013.s1
  7.4
  M
  Control (matched sibling)
  NA
  NA
  7568938
  8336371
  767434
  GRCh38
  Duplication
  No
  sanders_11_ASD_discovery_controls-11031.s1
  12
  M
  Control (matched sibling)
  NA
  NA
  5601811
  5631240
  29430
  GRCh38
  Duplication
  No
  sanders_11_ASD_discovery_controls-11393.s1
  9.1
  M
  Control (matched sibling)
  NA
  NA
  5412507
  5637936
  225430
  GRCh38
  Duplication
  No
  sanders_11_ASD_discovery_controls-11901.s1
  7.5
  F
  Control (matched sibling)
  NA
  NA
  8163993
  8186369
  22377
  GRCh38
  Duplication
  No
  sanders_11_ASD_discovery_controls-11941.s1
  8.7
  F
  Control (matched sibling)
  NA
  NA
  8056303
  8058023
  1721
  GRCh38
  Deletion
  No
  sanders_11_ASD_discovery_controls-12373.s1
  11.7
  F
  Control (matched sibling)
  NA
  NA
  8231202
  8301053
  69852
  GRCh38
  Deletion
  No
  sanders_11_ASD_discovery_controls-13076.s1
  19.5
  F
  Control (matched sibling)
  NA
  NA
  6748057
  6749142
  1086
  GRCh38
  Deletion
  No

Cases

Patient ID
Validation Description
Primary Disorder Inheritence
Inheritence
Family Profile
Disease Segregation
Gene Content
Altered Gene Expression
 akter_23_ASD/ADHD/DD/ID_discovery_cases-case20
 
 
 Unknown
 
 
 PLCB1-IT1,PLCB1
 
 akter_24_ASD/ADHD/DD/ID_discovery_cases-case349
 
 
 Unknown
 
 
 PLCB1-IT1,PLCB1
 
 brandler_18_ASD_discovery_cases-caseSSC10623
 PCR or SNP data validation
 
 Maternal
 
 
 PLCB1-IT1,PLCB1
 
 christian_08_ASD_discovery_cases-AU1368302
 FISH, microsatellite
 
 inherited
 Multiplex
 NA
 PHKBP1,PLCB1-IT1,PLCB1
 
 engchuan_15_ASD_discovery_cases-case14058_1000
 
 
 Unknown
 
 
 RNA5-8SP7,LINC00654,LINC01729,RPS18P1,EIF4EP1,LINC00658,GPCPD1,SHLD1
 
 engchuan_15_ASD_discovery_cases-case14134_2320
 
 
 Unknown
 
 
 PLCB4
 
 engchuan_15_ASD_discovery_cases-case14259_3820
 
 
 Unknown
 
 
 SHLD1
 
 engchuan_15_ASD_discovery_cases-case8612_201
 
 
 Unknown
 
 
 PLCB1
 
 gabriele_17_DD/ID_discovery_cases-case272547
 
 
 Inherited
 
 Unknown
 MIR8062,RN7SL547P,LINC01751,LINC01706
 
 gai_11_ASD_discovery_cases-AU1070301
 
 
 Inherited
 
 
 0 genes
 
 gai_11_ASD_discovery_cases-AU1070302
 
 
 Inherited
 
 
 0 genes
 
 gai_11_ASD_discovery_cases-AU1368302
 
 
 Inherited
 
 
 PLCB1-IT1,PLCB1
 
 gai_11_ASD_discovery_cases-AU1368303
 
 
 Inherited
 
 
 PLCB1-IT1,PLCB1
 
 gazzellone_14_ASD_discovery_cases-case628-3
 
 
 Unknown
 Unknown
 Unknown
 PLCB1
 
 girirajan_11_ASD_discovery_cases-Si259
 
 
 Unknown
 Simplex
 
 RN7SL547P,PHKBP1,PLCB1-IT1,HAO1,TMX4,PLCB1
 
 girirajan_13a_ASD_discovery_cases-11013.p1
 aCGH (NimbleGen 135K array)
 
 Maternal
 Simplex
 Unknown
 RN7SL547P,PHKBP1,PLCB1-IT1,HAO1,TMX4,PLCB1
 
 girirajan_13a_ASD_discovery_cases-13085.p1
 aCGH (NimbleGen 135K array)
 
 Paternal
 Simplex
 Unknown
 MIR8062,RN7SL547P,PHKBP1,PLCB1-IT1,LINC01751,LINC01706,HAO1,LINC01428,TMX4,PLCB1
 
 girirajan_13a_ASD_discovery_cases-13817.p1
 aCGH (NimbleGen 135K array)
 
 Maternal
 Simplex
 Unknown
 PLCB1-IT1,PLCB1
 
 girirajan_13a_ASD_discovery_cases-14249.p1
 aCGH (NimbleGen 135K array)
 
 Maternal
 Simplex
 Unknown
 PLCB1-IT1,PLCB1
 
 girirajan_13a_ASD_discovery_cases-AU1887301
 aCGH (NimbleGen 135K array)
 
 Paternal
 Multiplex
 Unknown
 PLCB1-IT1,PLCB1
 
 girirajan_13a_ASD_discovery_cases-AU2689306
 aCGH (NimbleGen 135K array)
 
 Maternal
 Multiplex
 Unknown
 PLCB1-IT1,PLCB1
 
 kaminsky_11_DD/ID/ASD_discovery_cases-ISCA00000901
 FISH, qPCR, MLPA, aCGH, or standard G-banded chromosome analysis
 
 Paternal
 Unknown
 Unknown
 BMP2,MIR8062,RN7SL547P,PHKBP1,PLCB1-IT1,CASC20,LINC01713,LINC01751,LINC01706,HAO1,LINC01428,TMX4,PLCB1
 
 kaminsky_11_DD/ID/ASD_discovery_cases-ISCA00004560
 FISH, qPCR, MLPA, aCGH, or standard G-banded chromosome analysis
 
 Unknown
 Unknown
 Unknown
 MIR8062,RN7SL547P,PHKBP1,PLCB1-IT1,LINC01751,LINC01706,HAO1,LINC01428,TMX4,PLCB1
 
 kaminsky_11_DD/ID/ASD_discovery_cases-ISCA00005023
 FISH, qPCR, MLPA, aCGH, or standard G-banded chromosome analysis
 
 Unknown
 Unknown
 Unknown
 MIR8062,RN7SL547P,PHKBP1,PLCB1-IT1,LINC01751,LINC01706,HAO1,LINC01428,TMX4,PLCB1
 
 kanduri_15_ASD_discovery_cases-case1921
 
 
 Paternal
 Unknown
 Unknown
 PLCB1 (intronic)
 
 krumm_13_ASD_discovery_cases-case11013.p1
 
 
 Maternal
 Simplex
 Not segregated
 HAO1,TMX4
 
 krumm_15_ASD_discovery_cases-case11013.p1
 Illumina 1M
 
 Maternal
 Simplex
 Not segregated (CNV in unaffected sibling)
 PHKBP1,HAO1,TMX4,PLCB1
 
 krumm_15_ASD_discovery_cases-case11393.p1
 Illumina 1MDuo
 
 Paternal
 Simplex
 Not segregated (CNV in unaffected sibling)
 EIF4EP1,GPCPD1
 
 krumm_15_ASD_discovery_cases-case11555.p1
 Illumina 1M
 
 Maternal
 Simplex
 Segregated
 PROKR2
 
 krumm_15_ASD_discovery_cases-case13085.p1
 Illumina 1MDuo
 
 Paternal
 Simplex
 Segregated
 PHKBP1,PLCB1-IT1,HAO1,TMX4,PLCB1
 
 krumm_15_ASD_discovery_cases-case13609.p1
 Omni2.5-4v1
 
 Paternal
 Simplex
 Not segregated (CNV in unaffected sibling)
 EIF4EP1,GPCPD1
 
 krumm_15_ASD_discovery_cases-case14249.p1
 Omni2.5-4v1
 
 Maternal
 Simplex
 Segregated
 PLCB1-IT1,PLCB1
 
 leppa_16_ASD_discovery_cases-AU1368303
 
 
 Maternal
 Multiplex
 Not segregated (CNV not present in affected sibling)
 PLCB1-IT1,PLCB1
 
 levy_11_ASD_discovery_cases-11013.p1
 
 
 Maternal
 Simplex
 Not segregated
 RN7SL547P,PHKBP1,PLCB1-IT1,HAO1,TMX4,PLCB1
 
 monteiro_19_ASD_discovery_cases_case16
 
 
 Unknown
 
 
 RN7SL547P,PHKBP1,PLCB1-IT1,HAO1,TMX4,PLCB1
 
 o'roak_12_ASD_discovery_cases-case11013.p1
 aCGH, Sanger sequencing
 
 Maternal
 Simplex (quad)
 Unknown
 BMP2,MIR8062,RN7SL547P,PHKBP1,PLCB1-IT1,LINC01751,LINC01706,HAO1,LINC01428,TMX4,PLCB1
 
 pinto_10_ASD_discovery_cases-case5046_3
 qPCR
 
 De novo
 Multiplex
 Not segregated
 MACROD2 exonic
 
 poultney_13_ASD_discovery_cases-case05HI3629A
 
 
 Unknown
 Unknown (likely multiplex/AGRE)
 Unknown
 PHKBP1,PLCB1-IT1,TMX4,PLCB1
 
 prasad_12_ASD_discovery_cases-case117486L
 
 
 Unknown
 Unknown
 Unknown
 PLCB1
 
 prasad_12_ASD_discovery_cases-case60980L
 
 
 Unknown
 Unknown
 Unknown
 PLCB1
 
 sanders_11_ASD_discovery_cases-11013.p1
 
 
 Maternal
 Simplex (quad-proband matched)
 Not segregated
 RN7SL547P,PHKBP1,PLCB1-IT1,HAO1,TMX4,PLCB1
 
 sanders_11_ASD_discovery_cases-11031.p1
 
 
 Paternal
 Simplex (quad-proband matched)
 Not segregated
 GPCPD1
 
 sanders_11_ASD_discovery_cases-11393.p1
 
 
 Paternal
 Simplex (quad-proband matched)
 Not segregated
 LINC00654,LINC01729,RPS18P1,EIF4EP1,LINC00658,GPCPD1
 
 sanders_11_ASD_discovery_cases-11555.p1
 
 
 Maternal
 Simplex (quad-proband unmatched)
 Unknown
 UBE2D3P1,PROKR2
 
 sanders_11_ASD_discovery_cases-11721.p1
 
 
 Paternal
 Simplex (quad-proband matched)
 Segregated
 SHLD1
 
 sanders_11_ASD_discovery_cases-12202.p1
 
 
 Paternal
 Simplex (quad-proband matched)
 Not segregated
 PLCB1
 
 sanders_11_ASD_discovery_cases-12227.p1
 
 
 Maternal
 Simplex (quad-proband matched)
 Not segregated
 
 
 sanders_11_ASD_discovery_cases-12435.p1
 
 
 Unknown
 Simplex (quad-proband matched)
 Segregated
 
 
 sanders_11_ASD_discovery_cases-12476.p1
 
 
 Paternal
 Simplex (trio)
 NA
 
 
 sanders_11_ASD_discovery_cases-12510.p1
 
 
 Paternal
 Simplex (quad-proband matched)
 Not segregated
 SHLD1
 
 sanders_11_ASD_discovery_cases-12757.p1
 
 
 Maternal
 Simplex (trio)
 NA
 
 
 sanders_11_ASD_discovery_cases-13045.p1
 
 
 Maternal
 Simplex (trio)
 NA
 SHLD1
 
 sanders_11_ASD_discovery_cases-13085.p1
 
 
 Paternal
 Simplex (trio)
 NA
 MIR8062,RN7SL547P,PHKBP1,PLCB1-IT1,LINC01751,LINC01706,HAO1,LINC01428,TMX4,PLCB1
 
 yin_16_ASD_discovery_cases-case581
 
 
 Unknown
 Unknown
 Unknown
 PLCB1
 

Controls

Patient ID
Validation Description
Primary Disorder Inheritence
Inheritence
Family Profile
Disease Segregation
Gene Content
Altered Gene Expression
engchuan_15_ASD_discovery_controls-controlB655980_1007875789
 
 
  Unknown
 
 
  SHLD1
 
engchuan_15_ASD_discovery_controls-controlHABC_902443_902443
 
 
  Unknown
 
 
  PLCB1-IT1,PLCB1
 
engchuan_15_ASD_discovery_controls-controlHABC_902469_902469
 
 
  Unknown
 
 
  RNA5-8SP7,PROKR2
 
girirajan_13a_ASD_discovery_controls2-control42
 
 
  Unknown
 
 
  PLCB1
 
girirajan_13a_ASD_discovery_controls2-control43
 
 
  Unknown
 
 
  PLCB1
 
krumm_13_ASD_discovery_controls-control11013.s1
  Solid phase hybridization (Illumina 1M) and aCGH (Agilent SurePrint G3 4x180K)
 
  Maternal
  Simplex
 
  HAO1,TMX4
 
krumm_15_ASD_discovery_controls-control11013.s1
  Illumina 1M
 
  Maternal
 
 
  PHKBP1,HAO1,TMX4,PLCB1
 
krumm_15_ASD_discovery_controls-control11393.s1
  Illumina 1MDuo
 
  Paternal
 
 
  EIF4EP1,GPCPD1
 
krumm_15_ASD_discovery_controls-control13609.s1
  Omni2.5-4v1
 
  Paternal
 
 
  EIF4EP1,GPCPD1
 
krumm_15_ASD_discovery_controls-control13613.s1
  Omni2.5-4v1
 
  Paternal
 
 
  EIF4EP1,GPCPD1,SHLD1
 
levy_11_ASD_discovery_controls-11013.s1
 
 
  Maternal
  Simplex
  NA
  RN7SL547P,PHKBP1,PLCB1-IT1,HAO1,TMX4,PLCB1
 
sanders_11_ASD_discovery_controls-11013.s1
 
 
  Maternal
  Simplex (quad)
  NA
  RN7SL547P,PHKBP1,PLCB1-IT1,HAO1,TMX4,PLCB1
 
sanders_11_ASD_discovery_controls-11031.s1
 
 
  Paternal
  Simplex (quad)
  NA
  GPCPD1
 
sanders_11_ASD_discovery_controls-11393.s1
 
 
  Paternal
  Simplex (quad)
  NA
  LINC00654,LINC01729,RPS18P1,EIF4EP1,LINC00658,GPCPD1
 
sanders_11_ASD_discovery_controls-11901.s1
 
 
  Paternal
  Simplex (quad)
  NA
  PLCB1
 
sanders_11_ASD_discovery_controls-11941.s1
 
 
  Maternal
  Simplex (quad)
  NA
 
 
sanders_11_ASD_discovery_controls-12373.s1
 
 
  Paternal
  Simplex (quad)
  NA
  PLCB1-IT1,PLCB1
 
sanders_11_ASD_discovery_controls-13076.s1
 
 
  Unknown
  Simplex (quad)
  NA
 
 

No Animal Model Data Available
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