1q42.2-q44CNV Type: Deletion
Largest CNV size: 16879595 bp
Statistics Box:
Number of Reports: 2
Number of Reports: 2
Summary Information
Rare singleton deletion within this region was found in a case from a study of 15,749 individuals from the International Standards for Cytogenomic Arrays (ISCA) consortium with unexplained developmental delay, intellectual disability, dysmorphic features, multiple congenital anomalies, autism spectrum disorders, or clinical features suggestive of a chromosomal syndrome (Kaminsky et al., 2011).
Additional Locus Information
References
Major Reports
Title
Author, Year
Report Class
CNV Type
An evidence-based approach to establish the functional and clinical significance of copy number variants in intellectual and developmental disabili...
Deletion
Minor Reports
Title
Author, Year
Report Class
CNV Type
Comprehensive genome sequencing analyses identify novel gene mutations and copy number variations associated with infant developmental delay or intellectual disability (DD/ID)
Duplication
Cases
Cohort ID
Author, Year
Descripton
Cohort Size
Diagnosis
Age
Gender
CNV Size
Deletion
Duplication
Total CNV's
chen_22_DD/ID_discovery_cases
Patients recruited at the Children's Hospital of Chongqing Medical University, from September 2016 to April 2020.
69
Patients presented with developmental delay/intellectual disability (DD/ID), with or without multiple congenital anomalies (MCA).
Average age at diagnosis, 19 mos.
50.725% Male
16165262
0
1
1
kaminsky_11_DD/ID/ASD_discovery_cases
Cases from the International Standards for Cytogenomic Arrays (ISCA) consortium
15749
Unexplained developmental delay, intellectual disability, dysmorphic features, multiple congenital anomalies, autism spectrum disorders, or clinical features suggestive of a chromosomal syndrome
NA
NA
16879595
1
0
1
Controls
Cohort ID
Author, Year
Descripton
Cohort Size
Diagnosis
Age
Gender
CNV Size
Deletion
Duplication
Total CNV's
kaminsky_11_DD/ID/ASD_discovery_controls
Controls from the International Standards for Cytogenomic Arrays (ISCA) consortium
10118
Controls
NA
NA
NA
NA
NA
NA
Cases
Cohort ID
Geographical Ancestry
Discovery Method
Platform
Algorithm
Software
Validation Method
chen_22_DD/ID_discovery_cases
China
WGS
Illumina NovaSeq 6000
NA
Chigene
None
kaminsky_11_DD/ID/ASD_discovery_cases
NA
aCGH
Agilent 44K, Agilent 105K
Feature Extraction, DNA Analytics
FISH, qPCR, MLPA, aCGH, standard G-banded chromosome analysis
Controls
Cohort ID
Geographical Ancestry
Discovery Method
Platform
Algorithm
Software
Validation Method
kaminsky_11_DD/ID/ASD_discovery_controls
NA
aCGH
Agilent 44K, Agilent 105K
Feature Extraction, DNA Analytics
Cases
Patient ID
Author, Year
Age
Gender
Primary Diagnosis
Clinical Profile
Cognitive Profile
CNV Start
CNV End
CNV Size
Genome Build
Type Method
Validation
chen_22_DD/ID_discovery_cases-case34
36 mos.
M
Developmental delay and intellectual disability
Gesell scores: 60-77-74-100-37. Clinical profile: speech and language retardation, motor retardation, facial abnormalities, thumb hypoplasia, and social interaction disorder.
Intellectual disability.
232781161
248946422
16165262
GRCh38
Duplication
No
kaminsky_11_DD/ID/ASD_discovery_cases-ISCA00004253
NA
NA
Developmental delay/intellectual disability/ASD
Clinical profile NA
Cognitive profile NA
232097468
248918610
16821143
GRCh38
Deletion
Yes
Controls
No Control Data Available
Cases
Patient ID
Validation Description
Primary Disorder Inheritence
Inheritence
Family Profile
Disease Segregation
Gene Content
Altered Gene Expression
chen_22_DD/ID_discovery_cases-case34
De novo
LYST,ACTN2,CHRM3,CHML,ADSS2,FH,ENO1P1,OR2T1,SCCPDH,DESI2,ARID4B,HEATR1,ZNF692,MAP10,KIF26B,ZP4,ERO1B,FMN2,ZNF695,ZNF672,TFB2M,SMYD3,ZNF669,GREM2,OR2L5,OR2C3,EFCAB2,OR2L9P,OR2T7,NTPCR,OR2G3,SH3BP5L,MAP3K21,OR2L6P,PCNX2,OR2AS1P,OR9H1P,OR6R1P,OR2G2,ZNF670,ZNF496,OR14L1P,OR2B11,COX20,OR2T12,EDARADD,TGIF2P1,OR2M5,OR2AJ1,NLRP3,OR2M3,WDR64,OR2T4,OR2T34,OR14C36,OR2T11,OR2T10,B3GALNT2,LINC01341,SLC35F3,HSD17B7P1,GCSAML,PLD5,TUBB8P6,C1orf100,CNST,HNRNPU,GNG4,OR14A16,OR2L13,CATSPERE,PGBD2,OR2T6,LINC01743,VN1R5,OR2W3,OR6F1,OR2T8,OR2T3,OR2T29,LINC02774,OR14K1,LINC01139,IRF2BP2,LINC02897,OR2M1P,OR14A2,COA6,CYCSP5,KRT18P32,OR2G6,OR2M7,OR11L1,OR2AK2,RSL24D1P4,OR2T33,OR2L3,OR2L8,OR2M2,OR2T2,RPS7P3,OR2T5,OR2T27,OR2X1P,OR2T32P,OR2AS2P,OR2T35,RPL35P1,MAP1LC3C,OR14I1,OR13G1,VN1R17P,OR3D1P,OR2W5P,BECN2,RPL10AP5,MT1HL1,CFL1P4,RPS7P5,THAP12P8,LYPD8,RPL23AP20,RPL23AP25,SNORA14B,LINC01347,ZNF731P,LINC01348,RPSAP21,CLK3P2,MIPEPP2,KIF28P,KCNK1,NID1,LGALS8,MTR,ADH5P3,DPY19L4P1,RPS21P1,LDHAP2,LGALS8-AS1,RPL23AP23,RPL35AP6,HNRNPA1P42,LINC00184,MIR1537,RFKP1,FGFR3P6,CICP21,FCF1P7,RNY4P16,MIR3124,MIR3123,MIR3916,MTRNR2L11,MIR4753,LINC01354,LINC01132,MIR4427,FABP7P1,MIR4671,CHRM3-AS2,ZNF670-ZNF695,MIR4677,MIR4428,MTND3P8,RNA5SP82,MTND4P10,MTND5P18,DNAJC19P8,MTND5P19,AKT3-IT1,CHRM3-AS1,RNU5F-8P,LYST-AS1,RAC1P7,COA6-AS1,YWHAQP9,RYR2,RGS7,LYPD9P,SMYD3-AS1,SLC35F3-AS1,LINC02768,RN7SL148P,SMYD3-IT1,MTND6P15,RN7SKP55,CHCHD4P5,MTND6P14,GPR137B,TARBP1,TBCE,RNU6-1205P,RNU6-999P,RNU1-74P,RNU2-70P,RN7SL668P,RNU6-747P,RNU6-947P,RNU4-77P,RNU6-725P,RN7SKP12,RNU1-132P,RNU6-1089P,MTCO3P46,RNU6-1283P,MTCYBP14,AHCYP8,MTCYBP15,MTND4LP21,SEPTIN14P21,RNU6-968P,RN7SKP195,MTCO1P38,KIF26B-AS1,ZNF124,KMO,GGPS1,TOMM20,EXO1,CEP170,AKT3,ZBTB18,SDCCAG8,RBM34,OR2L2,OR2M4,OPN3,TRIM58,OR1C1,OR2L1P,AHCTF1
kaminsky_11_DD/ID/ASD_discovery_cases-ISCA00004253
FISH, qPCR, MLPA, aCGH, or standard G-banded chromosome analysis
Unknown
Unknown
Unknown
RN7SL299P,RNU6-1211P,MAP10,RNU1-74P,RPS7P3,RNU4-77P,MIR4427,RAC1P7,MIR4671,COA6,LINC01354,IRF2BP2,LINC00184,RNY4P16,RN7SL668P,LINC01348,SNORA14B,MIR4753,RPL23AP23,RPS21P1,MTND6P14,MTND5P19,MTND4P10,MTND4LP21,MTND3P8,MTCO3P46,LDHAP2,LYST-AS1,MIR1537,RNU6-968P,RNU2-70P,ENO1P1,LGALS8-AS1,RPSAP21,RPL35P1,MT1HL1,RN7SKP195,MIR4428,MTCYBP15,MTND6P15,MTND5P18,YWHAQP9,RNU6-725P,KRT18P32,MIPEPP2,CHRM3-AS1,RPS7P5,ADH5P3,RNU5F-8P,THAP12P8,RFKP1,HNRNPA1P42,MIR3123,RPL23AP20,CFL1P4,MAP1LC3C,RN7SKP12,RPL10AP5,RSL24D1P4,RNU6-747P,FCF1P7,MIR4677,FABP7P1,RN7SL148P,TGIF2P1,CYCSP5,RN7SKP55,RNU6-947P,RNU6-1089P,RNU6-999P,RNU1-132P,DNAJC19P8,CHCHD4P5,RNU6-1283P,SMYD3-IT1,LINC01743,C1orf229,MIR3916,RNA5SP82,VN1R17P,VN1R5,OR2B11,OR2W5,OR2G2,OR2G3,OR14L1P,OR3D1P,OR6F1,OR14A2,OR14K1,OR14A16,HSD17B7P1,OR6R1P,OR11L1,OR2W3,OR2T8,OR2AJ1,CLK3P2,OR2L8,OR2AK2,OR2L9P,OR2L6P,OR2L13,OR2M1P,OR2M5,OR2M2,OR2T33,OR2M7,OR14C36,OR2T4,OR2T1,OR2T7,OR2T3,OR2T5,OR2AS2P,OR2AS1P,OR2T34,OR2T27,OR14I1,AHCYP8,DPY19L4P1,MIR3124,PGBD2,RNU6-1205P,LINC01745,LINC01744,NTPCR,MAP3K21,KCNK1,TARBP1,LINC01132,TOMM20,GGPS1,B3GALNT2,MTCYBP14,GNG4,ERO1B,LGALS8,ZP4,MTRNR2L11,LINC01139,CHRM3-AS2,FH,OPN3,CHML,EXO1,TUBB8P6,SEPT14P21,LINC01347,C1orf100,DESI2,KIF26B-AS1,CNST,SCCPDH,LINC01341,AHCTF1,ZNF695,ZNF669,FGFR3P6,ZNF124,ZNF496,NLRP3,GCSAML,OR2C3,GCSAML-AS1,OR13G1,OR1C1,OR9H1P,TRIM58,OR2X1P,OR2L5,OR2L2,OR2L3,OR2T32P,OR2M3,OR2M4,OR2T12,OR2T2,OR2T29,OR2T10,OR2T11,LYPD8,SH3BP5L,ZNF672,ZNF692,SIPA1L2,PCNX2,SLC35F3,RBM34,ARID4B,TBCE,LYST,NID1,GPR137B,EDARADD,HEATR1,ACTN2,MTR,RYR2,CHRM3,GREM2,KMO,WDR64,BECN2,CEP170,AKT3,AKT3-IT1,ZBTB18,ADSS,CATSPERE,COX20,HNRNPU,EFCAB2,TFB2M,KIF28P,ZNF670-ZNF695,ZNF670,OR2L1P,OR2T6,OR2T35,FMN2,RGS7,PLD5,KIF26B,SMYD3,OR2G6,SDCCAG8
Controls
No Control Data Available
No Animal Model Data Available