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1q42.2CNV Type: Deletion-Duplication


Largest CNV size: 2070000 bp

Statistics Box:
Number of Reports: 20



Summary Information

Summary statement in development

Additional Locus Information

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References

Major Reports

Title
Author, Year
Report Class
CNV Type
DISC1 duplication in two brothers with autism and mild mental retardation.
Duplication
Functional impact of global rare copy number variation in autism spectrum disorders.
Duplication
An evidence-based approach to establish the functional and clinical significance of copy number variants in intellectual and developmental disabili...
Deletion
Application of custom-designed oligonucleotide array CGH in 145 patients with autistic spectrum disorders.
Duplication
Refinement and discovery of new hotspots of copy-number variation associated with autism spectrum disorder.
Deletion
Screening of 50 cypriot patients with autism spectrum disorders or autistic features using 400K custom array-CGH.
Duplication
Excess of rare, inherited truncating mutations in autism.
Deletion
Targeted resequencing of 358 candidate genes for autism spectrum disorder in a Chinese cohort reveals diagnostic potential and genotype-phenotype c...
Deletion
NA
Duplication

Minor Reports

Title
Author, Year
Report Class
CNV Type
Rare structural variation of synapse and neurotransmission genes in autism.
Deletion
Multiple recurrent de novo CNVs, including duplications of the 7q11.23 Williams syndrome region, are strongly associated with autism.
Deletion-Duplication
Use of array CGH to detect exonic copy number variants throughout the genome in autism families detects a novel deletion in TMLHE.
Duplication
A discovery resource of rare copy number variations in individuals with autism spectrum disorder.
Deletion-Duplication
Both rare and de novo copy number variants are prevalent in agenesis of the corpus callosum but not in cerebellar hypoplasia or polymicrogyria.
Duplication
Intragenic deletions affecting two alternative transcripts of the IMMP2L gene in patients with Tourette syndrome.
Duplication
Performance of case-control rare copy number variation annotation in classification of autism.
Duplication
The landscape of copy number variations in Finnish families with autism spectrum disorders.
Duplication
Genome-wide analysis of copy number variations identifies PARK2 as a candidate gene for autism spectrum disorder.
Deletion
Chromosomal microarray analysis in a cohort of underrepresented population identifies SERINC2 as a novel candidate gene for autism spectrum disorder.
Deletion
Comparative Analyses of Copy-Number Variation in Autism Spectrum Disorder and Schizophrenia Reveal Etiological Overlap and Biological Insights.
Deletion

Cases

Cohort ID
Author, Year
Descripton
Cohort Size
Diagnosis
Age
Gender
CNV Size
Deletion
Duplication
Total CNV's
 bertelsen_14_TS/ADHD/OCD/ASD_discovery_cases
 Unrelated Tourette syndrome (TS) patients recruited through the Herlev Tourette Clinic (Denmark)
 188
 Tourette syndrome (TS) with additional comorbidities, including ADHD, OCD, and ASD
 N/A
 81.91% Male
 102000
 0
 1
 1
 celestino-soper_11_ASD_discovery_cases
 ASD probands from Simons Simplex Collection (SSC) trios. 90 of the probands in this study were also used in the Sanders et al. 2011 CNV report.
 99
 ASD
 
 87.88% Male
 8078
 0
 2
 2
 crepel_10_ASD_discovery_cases
 Affected siblings of unrelated parents
 2
 Autism with mild mental retardation (MR)
 Range, 5 yr 8 mo-7 yr 10 mo
 100% Male
 2070000
 0
 2
 2
 crepel_10_ASD_replication_cases
 Belgian ASD patients
 260
 Non-syndromic autism, IQ between 57-116
 
 
 2070000
 0
 0
 0
 engchuan_15_ASD_discovery_cases
 Samples from the Autism Genome Project (AGP)
 1892
 Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
 N/A
 85.78% Male
 103730
 0
 8
 8
 gai_11_ASD_replication_cases
 Replication case samples derived from AGRE sets 1-3
 593
 Idiopathic autism; cases designated as 'spectrum' and 'not quite autism' excluded, as were cases with known genetic syndromes or other non-idiopathic causes
 
 
 60649
 2
 0
 2
 girirajan_13a_ASD_discovery_cases
 1979 simplex cases from the Simons Simplex Collection (SSC), 579 multiplex cases from AGRE.
 2588
 Diagnosis of ASD based on meeting criteria on the Autism Diagnostic Observation Schedule (ADOS) and on the Autism Diagnostic Interview, Revised (ADI-R)
 NA
 NA
 101154
 1
 0
 1
 hnoonual_17_ASD_discovery_cases
 Cohort of 114 Thai ASD probands (68 retrospective ASD cases with the use of chromosomal microarray/CMA as a second line test; 46 prospective ASD and developmental delay cases with the use of CMA as the first-tier test)
 114
 68 cases with non-syndromic ASD (61 of which also presented with intellectual disability) were diagnosed with ASD based on meeting DSM-IV criteria for ASD, whereas an additional 46 prospective ASD and DD cases were given a clinical diagnosis of ASD based on DSM-5 criteria.
 Range, 1-18 years (at time of recruitment)
 79.82% Male
 113000
 1
 0
 1
 kaminsky_11_DD/ID/ASD_discovery_cases
 Cases from the International Standards for Cytogenomic Arrays (ISCA) consortium
 15749
 Unexplained developmental delay, intellectual disability, dysmorphic features, multiple congenital anomalies, autism spectrum disorders, or clinical features suggestive of a chromosomal syndrome
 NA
 NA
 106745
 2
 0
 2
 kanduri_15_ASD_discovery_cases
 Autistic cases from an initial sample of 83 Finnish families comprising 257 family members following quality control
 80
 Diagnosis of ASD based on DSM-IV, 4th edition, or ICD-10 criteria; patients screened based on Childhood Autism Rating Scale (CARS), Asperger Syndrome Screening Questionnaire, and Asperger's Syndrome Diagnostic Interview.
 N/A
 N/A
 101646
 0
 1
 1
 kousoulidou_13_ASD_discovery_cases
 Cypriot patients with ASD or autistic features
 50
 Children with preliminary diagnosis of ASD [reevaluated by clinical geneticist to rule out autistic-like syndromes and retested for ASD based on DSM-IV-TR and ICD-10 using Gilliam Autism Rating Scale-2 (GARS-2)]
 Range, 3-18 yrs.
 90% Male
 40270
 0
 1
 1
 krumm_15_ASD_discovery_cases
 Probands from the Simons Simplex Collection
 2377
 Diagnosis of ASD
 N/A
 N/A
 134634
 2
 0
 2
 kushima_18_ASD_discovery_cases
 Individuals predominantly recruited from the middle of Honshu Island (Japan)
 1108
 Cases were diagnosed with ASD according to DSM-5 criteria, with diagnostic and screening instruments (ADI-R, ADOS, ASQ, and SRS) used to evaluate ASD-related behaviors and symptoms in the majority of cases.
 Median age, 19 years
 78.0% Male
 208702
 1
 0
 1
 pinto_10_ASD_discovery_cases
 Autism Genome Project (AGP) consortium patient cohort from families with at least two ASD individuals
 996
 ASD (ADI-R and ADOS): strict, broad, or spectrum ASD
 
 
 102682
 0
 2
 2
 prasad_12_ASD_discovery_cases
 Unrelated ASD cases recruited from three Canadian sites (Hospital for Sick Children, McMaster University, and Memorial University of Newfoundland); the majority of cases had been previously genotyped with results published in Marshall et al., 2008 and Pinto et al., 2010. 20 cases from initial cohort of 696 were excluded from further analysis (due to CNVs > 5 Mb).
 676
 Diagnosis of ASD based on meeting criteria on ADI-R and/or ADOS
 NA
 82.84% Male
 8781
 1
 1
 2
 sajan_13_ACC/CBLH/PMG_discovery_cases
 Individuals with severe congenital brain malformations [agenesis of the corpus callosum (ACC), cerebellar hypoplasia (CBLH), and/or polymicrogyria (PMG)] and additional neurodevelopmental phenotypes
 487
 Diagnosis of agenesis of the corpus callosum (ACC), cerebellar hypoplasia (CBLH), and/or polymicrogyria (PMG); additional diagnoses of autism spectrum disorder (ASD), developmental delay (DD), intellectual disability (ID) and/or seizures in some patients
 N/A
 N/A
 79723
 0
 1
 1
 sanders_11_ASD_discovery_cases
 Autistic probands from the Simons Simplex Collection (SSC). 872 probands in quartet families, 272 probands in trios.
 1124
 ASD diagnosis: 89.5% autism; 8.5% PDD-NOS, 2% Asperger syndrome. Mean full-scale IQ 85.1 1.5 (mean verbal IQ, 81.9 1.7; mean non-verbal IQ, 88.4 1.4)
 Mean, 9.1 yrs.
 86.1% Male
 216012
 4
 3
 7
 wisniowiecka-kowalnik_12_ASD_discovery_cases
 ASD patients from 132 simplex and 13 multiplex families of Polish descent
 145
 Diagnosis of ASD based on ICD-10 standards and Childhood Autism Rating Scale (CARS) protocol. 45 cases with additional diagnosis of developmental delay /intellectual disability.
 Range, 3-26 yrs.
 84.83% Male
 750000
 0
 1
 1
 yin_16_ASD_discovery_cases
 Discovery cohort of ASD cases recruited from the Department of Psychiatry of National Taiwan University Hospital (NTUH), Chang Gung Memorial Hospital (CGMH), Taoyuan, and Taoyuan Mental Hospital (TMH), Taiwan.
 335
 Cases diagnosed with autistic disorder according to DSM-IV and confirmed by using the Chinese version of ADI-R. Cases' autistic behaviors assessed by Social Responsiveness Scale (SRS), and cognitive functions assessed by the Weschler Intelligence Scale for Children-Third Edition (WISC-III) and the Wisconsin Card Sorting Test (WCST).
 Mean, 9.39 4.04 yrs.
 89.3% Male
 3239
 1
 0
 1
 zarrei_19_ASD/ADHD/OCD/SCZ_discovery_cases
  NA NA
 Samples with neurodevelopmental disorders (NDDs) mostly from the province of Ontario, Canada
 2691
 1,838 cases diagnosed with ASD, 427 with ADHD, 204 with schizophrenia, and 222 with OCD
 
 76.37% Male
 25931
 0
 1
 1
 zhou_19_ASD_discovery_cases
 ASD probands from families recruited from training centers in Beijing and Tsingdao, China
 539
 Cases were diagnosed for ASD by ADI-R and ADOS
 4.92 1.20 years
 87.38% Male
 69000
 1
 0
 1

Controls

Cohort ID
Author, Year
Descripton
Cohort Size
Diagnosis
Age
Gender
CNV Size
Deletion
Duplication
Total CNV's
 crepel_10_ASD_discovery_controls
 Control cohort including patients with mental handicap, congenital malformations, and parents of patients (Belgium)
 1577
 Autism control cohort
 
 
 2070000
 0
 0
 0
 engchuan_15_ASD_discovery_controls
 Platform-matched controls from three large studies: SAGE (Study of Addiction Genetics and Environment), Ontario Colorectal Cancer study, and HABC (Health Aging and Body Composition)
 2342
 Controls; subjects had no previous psychiatric history
 N/A
 46.67% Male
 105720
 2
 17
 19
 gai_11_ASD_discovery_controls
 Samples recruited from visits conducted within CHOP healthcare network
 1775
 Controls: patients screened for having no chronic illness/health issues as well as autism
 Range, 3-18 yrs.
 
 N/A
 
 
 2
 gai_11_ASD_replication_controls
 Healthy individuals comprising the CHOP CNV resource
 2026
 Controls
 
 
 N/A
 
 
 5
 girirajan_11_ASD_discovery_controls
 Control individuals ascertained by NIMH Genetics Initiative. DNA samples from these individuals were obtained from the Rutgers Univ. Cell & DNA Repository.
 337
 Control. Individuals screened specifically for eight mental health disorders.
 
 
 605081
 0
 1
 1
 kaminsky_11_DD/ID/ASD_discovery_controls
 Controls from the International Standards for Cytogenomic Arrays (ISCA) consortium
 10118
 Controls
 NA
 NA
 NA
 NA
 NA
 NA
 kanduri_15_ASD_discovery_controls
 Unrelated Finnish samples from the cohort of Health 2000 survey from an initial sample of 288 individuals following quality control
 269
 Controls screened for DSM-IV mental disorders using the Composite International Diagnostic Interview and psychotic disorders using the research version of the Structured Clinical Interview for DSM-IV
 N/A
 N/A
 85688
 0
 1
 1
 kousoulidou_13_ASD_discovery_controls
 Control cohort consisting of 50 normal participants (36% male) older than 30 years of age with at least two biological children with no mental, neurological, or developmental disorder; and 80 normal individuals having children with syndromic or nonsyndromic intellectual disability, developmental delay, or rare neurological syndromes.
 130
 Controls
 N/A
 N/A
 40270
 0
 10
 10
 krumm_15_ASD_discovery_controls
 Unaffected siblings from quad families from the Simons Simplex Collection
 1786
 Control
 N/A
 N/A
 162157
 0
 1
 1
 kushima_18_ASD/SCZ_discovery_controls
 Individuals selected from the general population and predominantly recruited from the middle of Honshu Island (Japan)
 2095
 Controls had no history of mental disorders based upon responses to questionnaires or self-reporting.
 Median age, 37 years
 52.0% Male
 27138
 1
 0
 1
 levy_11_ASD_discovery_controls
 Unaffected siblings of autistic probands from 887 families from the Simons Simplex Collection (SSC)
 863
 Control
 
 47.97% Male
 32439
 0
 1
 1
 prasad_12_ASD_discovery_controls
 PDx controls [1000 DNA samples from reportedly healthy donors (50.2% male) from BioServe (Beltsville, MD)] and 4139 in-house controls previously reported in Krawcak et al. 2006, Stewart et al. 2009, and Bierut et al. 2010. CNVs identified in controls were used to define rare ASD-specific CNVs.
 5139
 Control
 NA
 NA (PDx controls 50.2% male)
 8781
 0
 0
 0
 sanders_11_ASD_discovery_controls
 Matched siblings of autistic probands from the Simons Simplex Collection (SSC).
 872
 Controls
 Mean, 10.0 yrs.
 
 88671
 0
 2
 2
 yin_16_ASD_discovery_controls
 Individuals from the Han Chinese Cell and Genome Bank (HCCGB) in Taiwan
 1093
 Controls
 Mean, 68.07 10.12 yrs.
 48.0% Male
 3239
 0
 0
 0
 zhou_19_ASD_discovery_controls
 Samples from blood donors at donation stations in Beijing, China (note: CNVs identified in controls not reported in this study)
 512
 Controls were screened for ASD by AQ measurement (score < 32) and self-reported to be negative for personal or family history of neurological disorders or psychiatric illness related to ASD and adverse pregnancy history
 29.77 9.12 years
 76.17% Male
 N/A
 N/A
 N/A
 N/A

Cases

Cohort ID
Geographical Ancestry
Discovery Method
Platform
Algorithm
Software
Validation Method
 bertelsen_14_TS/ADHD/OCD/ASD_discovery_cases
  Danish
 Array SNP
  Affymetrix 2.7M, Affymetrix CytoScan HD
 
 Affymetrix ChAS
 None
 celestino-soper_11_ASD_discovery_cases
 
 aCGH
  Agilent 1M
 ADM-2
 Agilent Feature Extraction v10.7.3.1, Agilent DNA Analytics v4.0.76
 None
 crepel_10_ASD_discovery_cases
  Belgian
 aCGH
  BACs aCGH
 
 qBASE
 qPCR
 crepel_10_ASD_replication_cases
  Belgian
 qPCR
  Roche LightCycler 480
 
 qBASE
 
 engchuan_15_ASD_discovery_cases
  Caucasian
 Solid phase hybridization
  Illumina 1M
 
 
 None
 gai_11_ASD_replication_cases
  European
 Solid phase hybridization
  Illumina Infinium II HumanHap550 BeadChip
 
 BeadStudio 3.0
 None
 girirajan_13a_ASD_discovery_cases
  NA
 aCGH
  Custom microarray with a high density of probes targeted to 1,367 regions with a susceptible genomic architecture
 ADM-2
 Agilent Genomic Workbench
 aCGH (NimbleGen 135K array)
 hnoonual_17_ASD_discovery_cases
  Thai
 Solid phase hybridization
  Illumina Infinium CytoSNP-850K v1.1 BeadChip
 
 BlueFuse Multi v4.3, GenomeStudio Data Analysis v.2011.1
 None
 kaminsky_11_DD/ID/ASD_discovery_cases
  NA
 aCGH
  Agilent 44K, Agilent 105K
 
 Feature Extraction, DNA Analytics
 FISH, qPCR, MLPA, aCGH, standard G-banded chromosome analysis
 kanduri_15_ASD_discovery_cases
  Finnish
 Solid phase hybridization
  Illumina Human OmniExpress-12v1.0 BeadChip
 QuantiSNP, PennCNV
 Illumina BeadStudio
 None
 kousoulidou_13_ASD_discovery_cases
  Cyprus
 aCGH
  Agilent 400K custom array-CGH
 
 Agilent Feature Extraction 9.1, Nexus Copy Number 5.1
 qPCR
 krumm_15_ASD_discovery_cases
  N/A
 WES
 
 CoNIFER, XHMM
 
 Solid phase hybridization (Illumina 1M, 1 M Duo, or Omni 2.5)
 kushima_18_ASD_discovery_cases
  Japanese
 aCGH
  NimbleGen 720K, Agilent 400K
 FASST2
 Nexus Copy Number v.9.0
 N/A
 pinto_10_ASD_discovery_cases
  European
 Solid phase hybridization
  Illumina Infinium 1M SNP microarray
 QuantiSNP, iPattern
 
 qPCR, long-range PCR (LR-PCR), MLPA, FISH, aCGH (Agilent 1M), array SNP (Affymetrix 500K)
 prasad_12_ASD_discovery_cases
  Canada
 aCGH
  Agilent 1M
 ADM-2, DNAcopy (R Bioconductor)
 DNA Analytics v4.0.85 (Agilent), DNAcopy
 None
 sajan_13_ACC/CBLH/PMG_discovery_cases
  81.31% Caucasian
 Solid phase hybridization
  Illumina InfiniumII HumanHap610
 PennCNV
 
 None (not tested or failure to confirm by qPCR)
 sanders_11_ASD_discovery_cases
  White non-Hispanic, 74.5%; mixed, 9.3%, Asian, 4.3%, White Hispanic, 4.0%, African-American, 3.8%; other, 4.2&
 Solid phase hybridization
  Illumina 1M v1, Illumina 1M v3
 PennCNV, QuantiSNP, GNOSIS
 
 
 wisniowiecka-kowalnik_12_ASD_discovery_cases
  Polish
 aCGH
  OLIGO V8.0 and V8.1 exon-targeted CMA (MGL/BCM)
 
 BCM web-based software, custom-designed IMiD-web2py software
 FISH
 yin_16_ASD_discovery_cases
  Han Chinese
 Array SNP
  Affymetrix 6.0
 
 Affymetrix Genotyping Console v.4.1
 None
 zarrei_19_ASD/ADHD/OCD/SCZ_discovery_cases
  74.1% European
 Array SNP
  Affymetrix CytoScan HD
 
 Affymetrix ChAS, iPattern, BioDiscovery Nexus, Partek Genomics Suite
 RT-qPCR or WGS
 zhou_19_ASD_discovery_cases
  Han Chinese
 Targeted exome sequencing
  Roche NimbleGen SeqCap EZ Library, Illumina HiSeq 2500
 
 XHMM v.1.0
 qPCR

Controls

Cohort ID
Geographical Ancestry
Discovery Method
Platform
Algorithm
Software
Validation Method
  crepel_10_ASD_discovery_controls
  Belgian
  aCGH
  BACs aCGH
 
 
 
  engchuan_15_ASD_discovery_controls
  Caucasian
  Solid phase hybridization
  Illumina 1M
 
 
  None
  gai_11_ASD_discovery_controls
  1005 European descent, 723 African descent, 47 Asian descent
  Solid phase hybridization
  Illumina Infinium II HumanHap550 BeadChip
 
  BeadStudio 3.0
  None
  gai_11_ASD_replication_controls
 
  Solid phase hybridization
  Illumina Infinium II HumanHap550 BeadChip
 
  BeadStudio 3.0
  None
  girirajan_11_ASD_discovery_controls
 
  aCGH
  Custom microarray targeting 107 genomic hotspot regions (Roche NimbleGen Hotspot v1.0 array; 12 x 135K)
  HMM
 
  None
  kaminsky_11_DD/ID/ASD_discovery_controls
  NA
  aCGH
  Agilent 44K, Agilent 105K
 
  Feature Extraction, DNA Analytics
 
  kanduri_15_ASD_discovery_controls
  Finnish
  Solid phase hybridization
  Illumina Infinium HD Human610-Quad BeadChip
  QuantiSNP, PennCNV
  Illumina BeadStudio
  None
  kousoulidou_13_ASD_discovery_controls
  Cyprus
  aCGH
  Agilent 400K custom array-CGH
 
  Agilent Feature Extraction 9.1, Nexus Copy Number 5.1
 
  krumm_15_ASD_discovery_controls
  N/A
  WES
 
  CoNIFER, XHMM
 
  Solid phase hybridization (Illumina 1M, 1 M Duo, or Omni 2.5)
  kushima_18_ASD/SCZ_discovery_controls
  Japanese
  aCGH
  NimbleGen 720K, Agilent 400K
  FASST2
  Nexus Copy Number v.9.0
  N/A
  levy_11_ASD_discovery_controls
 
  aCGH
  NimbleGen HD2
  HMM
 
 
  prasad_12_ASD_discovery_controls
  NA
  aCGH
  Agilent 1M
  ADM-2, DNAcopy (R Bioconductor)
  DNA Analytics v4.0.85 (Agilent), DNAcopy
 
  sanders_11_ASD_discovery_controls
 
  Solid phase hybridization
  Illumina 1M v1 or Illumina 1M v3
  PennCNV, QuantiSNP, GNOSIS
 
 
  yin_16_ASD_discovery_controls
  Han Chinese
  Array SNP
  Affymetrix 6.0
 
  Affymetrix Genotyping Console v.4.1
  None
  zhou_19_ASD_discovery_controls
  Han Chinese
  Targeted exome sequencing
  Roche NimbleGen SeqCap EZ Library, Illumina HiSeq 2500
 
  XHMM v.1.0
 

Cases

Patient ID
Author, Year
Age
Gender
Primary Diagnosis
Clinical Profile
Cognitive Profile
CNV Start
CNV End
CNV Size
Genome Build
Type Method
Validation
  bertelsen_14_TS/ADHD/OCD/ASD_discovery_cases-patient3
 N/A
 M
 Tourette syndrome, ADHD, and ASD
 Symptoms: TS, ADHD, ASD (Asperger syndrome). Family history: both mother and father were unaffected.
 N/A
 231575658
 231678608
  102951
 GRCh38
 Duplication
 No
  celestino-soper_11_ASD_discovery_cases-11178
 NA
 M
 ASD
 NA
 NA
 231529203
 231537281
  8079
 GRCh38
 Duplication
 No
  celestino-soper_11_ASD_discovery_cases-11426
 NA
 M
 ASD
 NA
 NA
 231351233
 231351354
  122
 GRCh38
 Duplication
 No
  crepel_10_ASD_discovery_cases-patient1
 7 yr 10 mo
 M
 Autism with mild MR
 Psychomotor development delay and severe behavioral difficulties at 2. Diagnosed with autism with mild MR and ADHD at 5. Impaired social reciprocity. Impaired communicative skills. Anxiety. Perseverations. Obsession for turning objects. Sensory hypersensitivity. Hyperactive behavior. Attention deficits. Mild periventricular leucomalacia observed on MRI. Affected by d-TGA. Sibling of crepel_10_ASD_discovery_cases-patient2.
 Full scale IQ 62 (by means of WISC-III)
 231596540
 233664719
  2068180
 GRCh38
 Duplication
 Yes
  crepel_10_ASD_discovery_cases-patient2
 5 yr 8 mo
 M
 Autism with mild MR
 Referred to dept. of child psychiatry at age of 4.5 due to speech delay and behavioral difficulties. Marked impairment of social reciprocity (active-but-odd social behavior). Poor language pragmatics. Very poor non-verbal communication. Fascination with minor visual and auditive details. Often absorbed by own interests. Did not reach diagnosic criteria for ADHD. Sibling of crepel_10_ASD_discovery_cases-patient1.
 Full scale IQ 62 (by means of WISC-III)
 231596540
 233664719
  2068180
 GRCh38
 Duplication
 Yes
  engchuan_15_ASD_discovery_cases-case13133_1503
 N/A
 N/A
 ASD
 Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
 
 231775265
 231813075
  37811
 GRCh38
 Duplication
 No
  engchuan_15_ASD_discovery_cases-case14380_4930
 N/A
 N/A
 ASD
 Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
 
 231573658
 231677388
  103731
 GRCh38
 Duplication
 No
  engchuan_15_ASD_discovery_cases-case4143_1
 N/A
 N/A
 ASD
 Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
 
 231574707
 231677388
  102682
 GRCh38
 Duplication
 No
  engchuan_15_ASD_discovery_cases-case4239_1
 N/A
 N/A
 ASD
 Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
 
 231575743
 231677388
  101646
 GRCh38
 Duplication
 No
  engchuan_15_ASD_discovery_cases-case4291_1
 N/A
 N/A
 ASD
 Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
 
 231574707
 231677388
  102682
 GRCh38
 Duplication
 No
  engchuan_15_ASD_discovery_cases-case5115_3
 N/A
 N/A
 ASD
 Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
 
 231574707
 231677388
  102682
 GRCh38
 Duplication
 No
  engchuan_15_ASD_discovery_cases-case6270_3
 N/A
 N/A
 ASD
 Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
 
 231574707
 231672536
  97830
 GRCh38
 Duplication
 No
  engchuan_15_ASD_discovery_cases-case6310_3
 N/A
 N/A
 ASD
 Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
 
 231574707
 231677388
  102682
 GRCh38
 Duplication
 No
  gai_11_ASD_replication_cases-AU1102301
 
 
 Autism
 
 
 229966327
 230026975
  60649
 Unknown
 Deletion
 No
  gai_11_ASD_replication_cases-AU1102303
 
 
 Autism
 
 
 229966327
 230026975
  60649
 Unknown
 Deletion
 No
  girirajan_13a_ASD_discovery_cases-11712.p1
 N/A
 N/A
 ASD
 Diagnosis of ASD based on meeting criteria on the Autism Diagnostic Observation Schedule (ADOS) and on the Autism Diagnostic Interview, Revised (ADI-R)
 N/A
 231696275
 231797429
  101155
 GRCh38
 Deletion
 Yes
  hnoonual_17_ASD_discovery_cases-caseAR44-3
 N/A
 M
 ASD
 Macrocephaly
 
 231627750
 231741327
  113578
 GRCh38
 Deletion
 No
  kaminsky_11_DD/ID/ASD_discovery_cases-ISCA00001611
 NA
 NA
 Developmental delay/intellectual disability/ASD
 Clinical profile NA
 Cognitive profile NA
 230693760
 230780212
  86453
 GRCh38
 Deletion
 Yes
  kaminsky_11_DD/ID/ASD_discovery_cases-ISCA00003850
 NA
 NA
 Developmental delay/intellectual disability/ASD
 Clinical profile NA
 Cognitive profile NA
 231950293
 232057038
  106746
 GRCh38
 Deletion
 Yes
  kanduri_15_ASD_discovery_cases-case1869
 N/A
 N/A
 ASD
 Diagnosis of ASD based on DSM-IV, 4th edition, or ICD-10 criteria; patient screened based on Childhood Autism Rating Scale (CARS), Asperger Syndrome Screening Questionnaire, and/or Asperger's Syndrome Diagnostic Interview.
 
 231711489
 231813134
  101646
 Unknown
 Duplication
 No
  kousoulidou_13_ASD_discovery_cases-patient2
 N/A
 M
 ASD
 ASD. Speech impairment, communication difficulties, poor eye contact, behavioral problems, and hyperactivity. Family history: unremarkable.
 
 231783130
 231823408
  40279
 GRCh38
 Duplication
 Yes
  krumm_15_ASD_discovery_cases-case11712.p1
 N/A
 Male
 ASD
 Proband from the Simons Simplex Collection (SSC). Family type: Quad
 
 231693825
 231795296
  101472
 GRCh38
 Deletion
 Yes
  krumm_15_ASD_discovery_cases-case12960.p1
 N/A
 Male
 ASD
 Proband from the Simons Simplex Collection (SSC). Family type: Trio
 
 232955556
 233090190
  134635
 GRCh38
 Deletion
 Yes
  kushima_18_ASD_discovery_cases-caseASD0208
 34 yrs.
 M
 ASD, ID
 Behavioral/psychiatric evaluation: sensory hypersensitivity. Congenital and developmental phenotypes: low birth weight. Family history: negative.
 Mild intellectual disability
 231740970
 231949671
  208702
 GRCh38
 Deletion
 N/A
  pinto_10_ASD_discovery_cases-case13133_1503
 NA
 M
 Autism
 Nonverbal, normal physical exam, no epilepsy
 Moderate/severe MR
 231775265
 231813075
  37811
 GRCh38
 Duplication
 Yes
  pinto_10_ASD_discovery_cases-case5115_3
 NA
 M
 ASD
 NA
 NA
 231574707
 231677388
  102682
 GRCh38
 Duplication
 Yes
  prasad_12_ASD_discovery_cases-case100678L
 NA
 F
 ASD
 Diagnosis of ASD based on meeting criteria on ADI-R and/or ADOS. Novel CNV
 
 229240104
 229245106
  5003
 Unknown
 Deletion
 No
  prasad_12_ASD_discovery_cases-case93914
 NA
 M
 ASD
 Diagnosis of ASD based on meeting criteria on ADI-R and/or ADOS. Novel CNV
 
 231831259
 231840039
  8781
 Unknown
 Duplication
 No
  sajan_13_ACC/CBLH/PMG_discovery_cases-caseLR02-109
 N/A
 N/A
 ACC
 Diagnosis of agenesis of the corpus callosum (ACC). ASD: possible diagnosis. Seizures: N/A.
 Developmental delay: yes. Intellectual disability: Possibly mild.
 231589122
 231668844
  79723
 GRCh38
 Duplication
 No
  sanders_11_ASD_discovery_cases-11144.p1
 10.9
 M
 Autism
 NA
 Full-scale IQ, 111; non-verbal IQ, 127; verbal IQ, 99
 232576138
 232715670
  139533
 GRCh38
 Duplication
 No
  sanders_11_ASD_discovery_cases-11357.p1
 9.5
 M
 Autism
 NA
 Full-scale IQ, 106; non-verbal IQ, 112; verbal IQ, 91
 231574707
 231677388
  102682
 GRCh38
 Duplication
 No
  sanders_11_ASD_discovery_cases-11712.p1
 5.5
 M
 ASD
 NA
 Full-scale IQ, 79; non-verbal IQ, 94; verbal IQ, 60
 231692626
 231805091
  112466
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-12339.p1
 15.5
 M
 Autism
 NA
 Full-scale IQ, 43; non-verbal IQ, 63; verbal IQ, 33
 231575743
 231677388
  101646
 GRCh38
 Duplication
 No
  sanders_11_ASD_discovery_cases-12435.p1
 11.2
 M
 Autism
 NA
 Full-scale IQ, 47; non-verbal IQ, 51; verbal IQ, 40
 232709570
 232722834
  13265
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-12690.p1
 11.6
 M
 Autism
 NA
 Full-scale IQ, 110; non-verbal IQ, 112; verbal IQ, 103
 233552495
 233565550
  13056
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-12960.p1
 6.6
 M
 Autism
 NA
 Full-scale IQ, 47; non-verbal IQ, 52; verbal IQ, 42
 232884822
 233100834
  216013
 GRCh38
 Deletion
 No
  wisniowiecka-kowalnik_12_ASD_discovery_cases-patient7
 6
 M
 Autism
 Autism
 Intellectual disability (ID)
 232464214
 233217986
  753773
 GRCh38
 Duplication
 Yes
  yin_16_ASD_discovery_cases-case49
 N/A
 N/A
 ASD
 Cases diagnosed with autistic disorder according to DSM-IV and confirmed by using the Chinese version of ADI-R.
 
 231625148
 231628386
  3239
 GRCh38
 Deletion
 No
  zarrei_19_ASD/ADHD/OCD/SCZ_discovery_cases-case5-0137-003
  NA NA
 N/A
 M
 ASD
 Primary diagnosis: ASD. Additional phenotype(s): no additional phenotypes reported
 
 231780353
 231806283
  25931
 GRCh38
 Duplication
 Yes
  zhou_19_ASD_discovery_cases-caseAU021603
 N/A
 N/A
 ASD
 Diagnosis of ASD by ADI-R and ADOS.
 
 231749876
 231819294
  69419
 GRCh38
 Deletion
 Yes

Controls

Patient ID
Author, Year
Age
Gender
Primary Diagnosis
Clinical Profile
Cognitive Profile
CNV Start
CNV End
CNV Size
Genome Build
Type Method
Validation
  engchuan_15_ASD_discovery_controls-control110036015154_
  N/A
  N/A
  Control
  No previous psychiatric history
 
  231584298
  231677388
  93091
  GRCh38
  Duplication
  No
  engchuan_15_ASD_discovery_controls-control110036020436_
  N/A
  N/A
  Control
  No previous psychiatric history
 
  231575743
  231677388
  101646
  GRCh38
  Duplication
  No
  engchuan_15_ASD_discovery_controls-control110036020865_
  N/A
  N/A
  Control
  No previous psychiatric history
 
  231575743
  231677388
  101646
  GRCh38
  Duplication
  No
  engchuan_15_ASD_discovery_controls-controlB277883_0067942601
  N/A
  N/A
  Control
  No previous psychiatric history
 
  231571668
  231677388
  105721
  GRCh38
  Duplication
  No
  engchuan_15_ASD_discovery_controls-controlB412301_1007874436
  N/A
  N/A
  Control
  No previous psychiatric history
 
  234356313
  234390194
  33882
  GRCh38
  Deletion
  No
  engchuan_15_ASD_discovery_controls-controlB534737_1007852659
  N/A
  N/A
  Control
  No previous psychiatric history
 
  231573658
  231677388
  103731
  GRCh38
  Duplication
  No
  engchuan_15_ASD_discovery_controls-controlB553658_1007850198
  N/A
  N/A
  Control
  No previous psychiatric history
 
  231573658
  231677388
  103731
  GRCh38
  Duplication
  No
  engchuan_15_ASD_discovery_controls-controlB566863_1007875835
  N/A
  N/A
  Control
  No previous psychiatric history
 
  233372818
  233419107
  46290
  GRCh38
  Deletion
  No
  engchuan_15_ASD_discovery_controls-controlB719092_1007853947
  N/A
  N/A
  Control
  No previous psychiatric history
 
  231574707
  231677388
  102682
  GRCh38
  Duplication
  No
  engchuan_15_ASD_discovery_controls-controlB719140_1007853740
  N/A
  N/A
  Control
  No previous psychiatric history
 
  231574707
  231677388
  102682
  GRCh38
  Duplication
  No
  engchuan_15_ASD_discovery_controls-controlB903773_0067949271
  N/A
  N/A
  Control
  No previous psychiatric history
 
  231574707
  231677388
  102682
  GRCh38
  Duplication
  No
  engchuan_15_ASD_discovery_controls-controlB948702_1007854260
  N/A
  N/A
  Control
  No previous psychiatric history
 
  231574707
  231677388
  102682
  GRCh38
  Duplication
  No
  engchuan_15_ASD_discovery_controls-controlB962764_1007843925
  N/A
  N/A
  Control
  No previous psychiatric history
 
  231574707
  231677388
  102682
  GRCh38
  Duplication
  No
  engchuan_15_ASD_discovery_controls-controlB981601_1007842471
  N/A
  N/A
  Control
  No previous psychiatric history
 
  231574707
  231677388
  102682
  GRCh38
  Duplication
  No
  engchuan_15_ASD_discovery_controls-controlHABC_900292_900292
  N/A
  N/A
  Control
  No previous psychiatric history
 
  231573658
  231677388
  103731
  GRCh38
  Duplication
  No
  engchuan_15_ASD_discovery_controls-controlHABC_900514_900514
  N/A
  N/A
  Control
  No previous psychiatric history
 
  231574707
  231677388
  102682
  GRCh38
  Duplication
  No
  engchuan_15_ASD_discovery_controls-controlHABC_900883_900883
  N/A
  N/A
  Control
  No previous psychiatric history
 
  231575743
  231677388
  101646
  GRCh38
  Duplication
  No
  engchuan_15_ASD_discovery_controls-controlHABC_901224_901224
  N/A
  N/A
  Control
  No previous psychiatric history
 
  231574707
  231677388
  102682
  GRCh38
  Duplication
  No
  engchuan_15_ASD_discovery_controls-controlHABC_902605_902605
  N/A
  N/A
  Control
  No previous psychiatric history
 
  231575743
  231677388
  101646
  GRCh38
  Duplication
  No
  girirajan_11_ASD_discovery_controls-NIMH_257
  NA
  NA
  Control
  NA
  NA
  232587190
  233192271
  605082
  GRCh38
  Duplication
  No
  kanduri_15_ASD_discovery_controls-control_split545
  N/A
  N/A
  Control
  Control screened for DSM-IV mental disorders using the Composite International Diagnostic Interview and psychotic disorders using the research version of the Structured Clinical Interview for DSM-IV
 
  231727447
  231813134
  85688
  Unknown
  Duplication
  No
  kousoulidou_13_ASD_discovery_controls-control1
  N/A
  N/A
  Control
 
 
  231783130
  231823408
  40279
  GRCh38
  Duplication
  No
  kousoulidou_13_ASD_discovery_controls-control10
  N/A
  N/A
  Control
 
 
  231783130
  231823408
  40279
  GRCh38
  Duplication
  No
  kousoulidou_13_ASD_discovery_controls-control2
  N/A
  N/A
  Control
 
 
  231783130
  231823408
  40279
  GRCh38
  Duplication
  No
  kousoulidou_13_ASD_discovery_controls-control3
  N/A
  N/A
  Control
 
 
  231783130
  231823408
  40279
  GRCh38
  Duplication
  No
  kousoulidou_13_ASD_discovery_controls-control4
  N/A
  N/A
  Control
 
 
  231783130
  231823408
  40279
  GRCh38
  Duplication
  No
  kousoulidou_13_ASD_discovery_controls-control5
  N/A
  N/A
  Control
 
 
  231783130
  231823408
  40279
  GRCh38
  Duplication
  No
  kousoulidou_13_ASD_discovery_controls-control6
  N/A
  N/A
  Control
 
 
  231783130
  231823408
  40279
  GRCh38
  Duplication
  No
  kousoulidou_13_ASD_discovery_controls-control7
  N/A
  N/A
  Control
 
 
  231783130
  231823408
  40279
  GRCh38
  Duplication
  No
  kousoulidou_13_ASD_discovery_controls-control8
  N/A
  N/A
  Control
 
 
  231783130
  231823408
  40279
  GRCh38
  Duplication
  No
  kousoulidou_13_ASD_discovery_controls-control9
  N/A
  N/A
  Control
 
 
  231783130
  231823408
  40279
  GRCh38
  Duplication
  No
  krumm_15_ASD_discovery_controls-control13737.s1
  N/A
  Female
  Control
  Unaffected sibling from the Simons Simplex Collection (SSC)
 
  234309100
  234471257
  162158
  GRCh38
  Duplication
  Yes
  kushima_18_ASD/SCZ_discovery_controls-controlCON0202
  26 yrs.
  M
  Control
  This individual had no history of mental disorders based upon responses to questionnaires or self-reporting.
 
  232005273
  232032410
  27138
  GRCh38
  Deletion
  N/A
  levy_11_ASD_discovery_controls-11809.s1
  NA
  F
  Control
  NA
  NA
  233054484
  233086922
  32439
  GRCh38
  Duplication
  No
  sanders_11_ASD_discovery_controls-11615.s1
  10.7
  F
  Control (matched sibling)
  NA
  NA
  231584298
  231672969
  88672
  GRCh38
  Duplication
  No
  sanders_11_ASD_discovery_controls-11809.s1
  8.4
  F
  Control (matched sibling)
  NA
  NA
  233065121
  233081664
  16544
  GRCh38
  Duplication
  No

Cases

Patient ID
Validation Description
Primary Disorder Inheritence
Inheritence
Family Profile
Disease Segregation
Gene Content
Altered Gene Expression
 bertelsen_14_TS/ADHD/OCD/ASD_discovery_cases-patient3
 
 
 Paternal
 Unknown
 Unknown
 RNU5A-5P,LINC00582,TSNAX-DISC1,DISC1
 
 celestino-soper_11_ASD_discovery_cases-11178
 
 
 Unknown
 Simplex
 NA
 TSNAX,TSNAX-DISC1
 
 celestino-soper_11_ASD_discovery_cases-11426
 
 
 Unknown
 Simplex
 NA
 SPRTN
 
 crepel_10_ASD_discovery_cases-patient1
 qPCR
 
 Paternal
 Multiplex
 Segregated
 RNU5A-5P,RN7SL299P,RNU6-1211P,MAP10,RNU1-74P,RPS7P3,RNU4-77P,MIR4427,DISC1-IT1,LINC01745,LINC01744,NTPCR,MAP3K21,KCNK1,LINC00582,SIPA1L2,PCNX2,TSNAX-DISC1,DISC1
 
 crepel_10_ASD_discovery_cases-patient2
 qPCR
 
 Paternal
 Multiplex
 Segregated
 RNU5A-5P,RN7SL299P,RNU6-1211P,MAP10,RNU1-74P,RPS7P3,RNU4-77P,MIR4427,DISC1-IT1,LINC01745,LINC01744,NTPCR,MAP3K21,KCNK1,LINC00582,SIPA1L2,PCNX2,TSNAX-DISC1,DISC1
 
 engchuan_15_ASD_discovery_cases-case13133_1503
 
 
 Unknown
 
 
 TSNAX-DISC1,DISC1
 
 engchuan_15_ASD_discovery_cases-case14380_4930
 
 
 Unknown
 
 
 RNU5A-5P,LINC00582,TSNAX-DISC1,DISC1
 
 engchuan_15_ASD_discovery_cases-case4143_1
 
 
 Unknown
 
 
 RNU5A-5P,LINC00582,TSNAX-DISC1,DISC1
 
 engchuan_15_ASD_discovery_cases-case4239_1
 
 
 Unknown
 
 
 RNU5A-5P,LINC00582,TSNAX-DISC1,DISC1
 
 engchuan_15_ASD_discovery_cases-case4291_1
 
 
 Unknown
 
 
 RNU5A-5P,LINC00582,TSNAX-DISC1,DISC1
 
 engchuan_15_ASD_discovery_cases-case5115_3
 
 
 Unknown
 
 
 RNU5A-5P,LINC00582,TSNAX-DISC1,DISC1
 
 engchuan_15_ASD_discovery_cases-case6270_3
 
 
 Unknown
 
 
 RNU5A-5P,LINC00582,TSNAX-DISC1,DISC1
 
 engchuan_15_ASD_discovery_cases-case6310_3
 
 
 Unknown
 
 
 RNU5A-5P,LINC00582,TSNAX-DISC1,DISC1
 
 gai_11_ASD_replication_cases-AU1102301
 
 
 Inherited
 
 
 TSNAX-DISC1, DISC1, DISC2
 
 gai_11_ASD_replication_cases-AU1102303
 
 
 Inherited
 
 
 TSNAX-DISC1, DISC1, DISC2
 
 girirajan_13a_ASD_discovery_cases-11712.p1
 aCGH (NimbleGen 135K array)
 
 Maternal
 Simplex
 Unknown
 TSNAX-DISC1,DISC1
 
 hnoonual_17_ASD_discovery_cases-caseAR44-3
 
 
 Unknown
 
 
 RNU5A-5P,TSNAX-DISC1,DISC1
 
 kaminsky_11_DD/ID/ASD_discovery_cases-ISCA00001611
 FISH, qPCR, MLPA, aCGH, or standard G-banded chromosome analysis
 
 Unknown
 Unknown
 Unknown
 AGT,CAPN9,COG2
 
 kaminsky_11_DD/ID/ASD_discovery_cases-ISCA00003850
 FISH, qPCR, MLPA, aCGH, or standard G-banded chromosome analysis
 
 Unknown
 Unknown
 Unknown
 DISC1
 
 kanduri_15_ASD_discovery_cases-case1869
 
 
 Maternal
 Unknown
 Unknown
 DISC1
 
 kousoulidou_13_ASD_discovery_cases-patient2
 qPCR
 
 De novo
 Unknown
 Possibly segregated
 TSNAX-DISC1,DISC1
 
 krumm_15_ASD_discovery_cases-case11712.p1
 Illumina 1MDuo
 
 Maternal
 Simplex
 Segregated
 TSNAX-DISC1,DISC1
 
 krumm_15_ASD_discovery_cases-case12960.p1
 Illumina 1MDuo
 
 Paternal
 Simplex
 Segregated
 NTPCR,PCNX2
 
 kushima_18_ASD_discovery_cases-caseASD0208
 While a subset of CNVs were reported to have been validated by qPCR in the report, precisely which CNVs were validated was not reported
 
 Inherited
 Simplex
 Unknown
 DISC1-IT1,TSNAX-DISC1,DISC1
 
 pinto_10_ASD_discovery_cases-case13133_1503
 qPCR-Maternal
 
 maternal
 Simplex
 NA
 TSNAX-DISC1,DISC1
 
 pinto_10_ASD_discovery_cases-case5115_3
 Agilent1M
 
 maternal
 NA
 NA
 RNU5A-5P,LINC00582,TSNAX-DISC1,DISC1
 
 prasad_12_ASD_discovery_cases-case100678L
 
 
 Unknown
 Unknown
 Unknown
 FAM89A
 
 prasad_12_ASD_discovery_cases-case93914
 
 
 Unknown
 Unknown
 Unknown
 KCNK1
 
 sajan_13_ACC/CBLH/PMG_discovery_cases-caseLR02-109
 Not tested by qPCR
 
 Unknown
 Unknown
 Unknown
 LINC00582,TSNAX-DISC1,DISC1
 
 sanders_11_ASD_discovery_cases-11144.p1
 
 
 Paternal
 Simplex (quad-proband matched)
 Segregated
 RNU6-1211P
 
 sanders_11_ASD_discovery_cases-11357.p1
 
 
 Maternal
 Simplex (quad-proband matched)
 Segregated
 RNU5A-5P,LINC00582,TSNAX-DISC1,DISC1
 
 sanders_11_ASD_discovery_cases-11712.p1
 
 
 Maternal
 Simplex (quad-proband matched)
 Segregated
 TSNAX-DISC1,DISC1
 
 sanders_11_ASD_discovery_cases-12339.p1
 
 
 Paternal
 Simplex (quad-proband matched)
 Not segregated
 RNU5A-5P,LINC00582,TSNAX-DISC1,DISC1
 
 sanders_11_ASD_discovery_cases-12435.p1
 
 
 Paternal
 Simplex (quad-proband matched)
 Segregated
 LINC01745
 
 sanders_11_ASD_discovery_cases-12690.p1
 
 
 Maternal
 Simplex (quad-proband matched)
 Not segregated
 
 
 sanders_11_ASD_discovery_cases-12960.p1
 
 
 Paternal
 Simplex (trio)
 NA
 NTPCR,PCNX2
 
 wisniowiecka-kowalnik_12_ASD_discovery_cases-patient7
 FISH
 
 Maternal
 Unknown
 Unknown
 RNU6-1211P,MAP10,RNU1-74P,LINC01745,LINC01744,NTPCR,SIPA1L2,PCNX2
 
 yin_16_ASD_discovery_cases-case49
 
 
 Unknown
 Unknown
 Unknown
 TSNAX-DISC1,DISC1
 
 zarrei_19_ASD/ADHD/OCD/SCZ_discovery_cases-case5-0137-003
 RT-qPCR or WGS
 
 Unknown
 
 
 TSNAX-DISC1,DISC1
 null
 zhou_19_ASD_discovery_cases-caseAU021603
 qPCR
 
 Maternal
 
 
 TSNAX-DISC1,DISC1
 

Controls

Patient ID
Validation Description
Primary Disorder Inheritence
Inheritence
Family Profile
Disease Segregation
Gene Content
Altered Gene Expression
engchuan_15_ASD_discovery_controls-control110036015154_
 
 
  Unknown
 
 
  RNU5A-5P,LINC00582,TSNAX-DISC1,DISC1
 
engchuan_15_ASD_discovery_controls-control110036020436_
 
 
  Unknown
 
 
  RNU5A-5P,LINC00582,TSNAX-DISC1,DISC1
 
engchuan_15_ASD_discovery_controls-control110036020865_
 
 
  Unknown
 
 
  RNU5A-5P,LINC00582,TSNAX-DISC1,DISC1
 
engchuan_15_ASD_discovery_controls-controlB277883_0067942601
 
 
  Unknown
 
 
  RNU5A-5P,LINC00582,TSNAX-DISC1,DISC1
 
engchuan_15_ASD_discovery_controls-controlB412301_1007874436
 
 
  Unknown
 
 
  COA6
 
engchuan_15_ASD_discovery_controls-controlB534737_1007852659
 
 
  Unknown
 
 
  RNU5A-5P,LINC00582,TSNAX-DISC1,DISC1
 
engchuan_15_ASD_discovery_controls-controlB553658_1007850198
 
 
  Unknown
 
 
  RNU5A-5P,LINC00582,TSNAX-DISC1,DISC1
 
engchuan_15_ASD_discovery_controls-controlB566863_1007875835
 
 
  Unknown
 
 
  MAP3K21
 
engchuan_15_ASD_discovery_controls-controlB719092_1007853947
 
 
  Unknown
 
 
  RNU5A-5P,LINC00582,TSNAX-DISC1,DISC1
 
engchuan_15_ASD_discovery_controls-controlB719140_1007853740
 
 
  Unknown
 
 
  RNU5A-5P,LINC00582,TSNAX-DISC1,DISC1
 
engchuan_15_ASD_discovery_controls-controlB903773_0067949271
 
 
  Unknown
 
 
  RNU5A-5P,LINC00582,TSNAX-DISC1,DISC1
 
engchuan_15_ASD_discovery_controls-controlB948702_1007854260
 
 
  Unknown
 
 
  RNU5A-5P,LINC00582,TSNAX-DISC1,DISC1
 
engchuan_15_ASD_discovery_controls-controlB962764_1007843925
 
 
  Unknown
 
 
  RNU5A-5P,LINC00582,TSNAX-DISC1,DISC1
 
engchuan_15_ASD_discovery_controls-controlB981601_1007842471
 
 
  Unknown
 
 
  RNU5A-5P,LINC00582,TSNAX-DISC1,DISC1
 
engchuan_15_ASD_discovery_controls-controlHABC_900292_900292
 
 
  Unknown
 
 
  RNU5A-5P,LINC00582,TSNAX-DISC1,DISC1
 
engchuan_15_ASD_discovery_controls-controlHABC_900514_900514
 
 
  Unknown
 
 
  RNU5A-5P,LINC00582,TSNAX-DISC1,DISC1
 
engchuan_15_ASD_discovery_controls-controlHABC_900883_900883
 
 
  Unknown
 
 
  RNU5A-5P,LINC00582,TSNAX-DISC1,DISC1
 
engchuan_15_ASD_discovery_controls-controlHABC_901224_901224
 
 
  Unknown
 
 
  RNU5A-5P,LINC00582,TSNAX-DISC1,DISC1
 
engchuan_15_ASD_discovery_controls-controlHABC_902605_902605
 
 
  Unknown
 
 
  RNU5A-5P,LINC00582,TSNAX-DISC1,DISC1
 
girirajan_11_ASD_discovery_controls-NIMH_257
 
 
  Unknown
 
 
  RNU6-1211P,MAP10,RNU1-74P,LINC01745,LINC01744,NTPCR,PCNX2
 
kanduri_15_ASD_discovery_controls-control_split545
 
 
  Unknown
 
 
  DISC1
 
kousoulidou_13_ASD_discovery_controls-control1
 
 
  Unknown
 
 
  TSNAX-DISC1,DISC1
 
kousoulidou_13_ASD_discovery_controls-control10
 
 
  Unknown
 
 
  TSNAX-DISC1,DISC1
 
kousoulidou_13_ASD_discovery_controls-control2
 
 
  Unknown
 
 
  TSNAX-DISC1,DISC1
 
kousoulidou_13_ASD_discovery_controls-control3
 
 
  Unknown
 
 
  TSNAX-DISC1,DISC1
 
kousoulidou_13_ASD_discovery_controls-control4
 
 
  Unknown
 
 
  TSNAX-DISC1,DISC1
 
kousoulidou_13_ASD_discovery_controls-control5
 
 
  Unknown
 
 
  TSNAX-DISC1,DISC1
 
kousoulidou_13_ASD_discovery_controls-control6
 
 
  Unknown
 
 
  TSNAX-DISC1,DISC1
 
kousoulidou_13_ASD_discovery_controls-control7
 
 
  Unknown
 
 
  TSNAX-DISC1,DISC1
 
kousoulidou_13_ASD_discovery_controls-control8
 
 
  Unknown
 
 
  TSNAX-DISC1,DISC1
 
kousoulidou_13_ASD_discovery_controls-control9
 
 
  Unknown
 
 
  TSNAX-DISC1,DISC1
 
krumm_15_ASD_discovery_controls-control13737.s1
  Omni2.5-4v1
 
  Paternal
 
 
  COA6,TARBP1,SLC35F3
 
kushima_18_ASD/SCZ_discovery_controls-controlCON0202
  While a subset of CNVs were reported to have been validated by qPCR in the report, precisely which CNVs were validated was not reported
 
  Unknown
 
 
  DISC1
 
levy_11_ASD_discovery_controls-11809.s1
 
 
  Maternal
  Simplex
  NA
  PCNX2
 
sanders_11_ASD_discovery_controls-11615.s1
 
 
  Maternal
  Simplex (quad)
  NA
  RNU5A-5P,LINC00582,TSNAX-DISC1,DISC1
 
sanders_11_ASD_discovery_controls-11809.s1
 
 
  Maternal
  Simplex (quad)
  NA
  PCNX2
 

No Animal Model Data Available
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