1q32.2CNV Type: Deletion-Duplication
Largest CNV size: 161374 bp
Statistics Box:
Number of Reports: 10
Number of Reports: 10
Summary Information
Summary statement in development
Additional Locus Information
References
Major Reports
Title
Author, Year
Report Class
CNV Type
Sporadic autism exomes reveal a highly interconnected protein network of de novo mutations.
Duplication
Impact of on-site clinical genetics consultations on diagnostic rate in children and young adults with autism spectrum disorder.
Duplication
Minor Reports
Title
Author, Year
Report Class
CNV Type
Rare structural variation of synapse and neurotransmission genes in autism.
Duplication
Multiple recurrent de novo CNVs, including duplications of the 7q11.23 Williams syndrome region, are strongly associated with autism.
Deletion-Duplication
Rare de novo and transmitted copy-number variation in autistic spectrum disorders.
Duplication
Use of array CGH to detect exonic copy number variants throughout the genome in autism families detects a novel deletion in TMLHE.
Duplication
A discovery resource of rare copy number variations in individuals with autism spectrum disorder.
Duplication
Copy number variation in Han Chinese individuals with autism spectrum disorder.
Duplication
Performance of case-control rare copy number variation annotation in classification of autism.
Deletion
Cases
Cohort ID
Author, Year
Descripton
Cohort Size
Diagnosis
Age
Gender
CNV Size
Deletion
Duplication
Total CNV's
celestino-soper_11_ASD_discovery_cases
ASD probands from Simons Simplex Collection (SSC) trios. 90 of the probands in this study were also used in the Sanders et al. 2011 CNV report.
99
ASD
87.88% Male
873
0
1
1
engchuan_15_ASD_discovery_cases
Samples from the Autism Genome Project (AGP)
1892
Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
N/A
85.78% Male
246466
1
0
1
gai_11_ASD_discovery_cases
Discovery case samples derived from AGRE set 4 (most recent patient recruitment)
631
Idiopathic autism; cases designated as 'spectrum' and 'not quite autism' excluded, as were cases with known genetic syndromes or other non-idiopathic causes
487810
0
2
2
gazzellone_14_ASD_discovery_cases
ASD-affected individuals referred to the Children Development and Behavior Research Center (CDRBC) at Harbin Medical University, China, between January 2007 and June 2011.
104
Diagnosis of ASD made using Autism Behavior Checklist (ABC) and Childhood Autism Rating Scale (CARS)
Mean age at enrollment, 4.31 1.80 yrs.
87.5% Male
42690
0
1
1
krumm_15_ASD_discovery_cases
Probands from the Simons Simplex Collection
2377
Diagnosis of ASD
N/A
N/A
15028
0
1
1
levy_11_ASD_discovery_cases
Autistic probands from 887 families from the Simons Simplex Collection (SSC)
858
ASD
87.06% Male
132705
0
1
1
munnich_19_ASD_discovery_cases
Children and young adults with ASD recruited from 26 day-care hospitals and specialized institutions within the Greater Paris region
502
Diagnosis of ASD based on DSM criteria, with standardized clinical assessment performed using CARS, ADOS, and/or ADI-R
< 10 years, 34 cases; 11-20 years, 194 cases; 21-30 years, 211 cases; > 30 years, 63 cases
69.92% Male
515000
0
1
1
o'roak_12_ASD_discovery_cases
Autistic probands from the Simons Simplex Collection (SSC), from an initial cohort of 189 autism families
122
ASD/autism
NA
NA
215852
0
1
1
prasad_12_ASD_discovery_cases
Unrelated ASD cases recruited from three Canadian sites (Hospital for Sick Children, McMaster University, and Memorial University of Newfoundland); the majority of cases had been previously genotyped with results published in Marshall et al., 2008 and Pinto et al., 2010. 20 cases from initial cohort of 696 were excluded from further analysis (due to CNVs > 5 Mb).
676
Diagnosis of ASD based on meeting criteria on ADI-R and/or ADOS
NA
82.84% Male
479954
0
1
1
sanders_11_ASD_discovery_cases
Autistic probands from the Simons Simplex Collection (SSC). 872 probands in quartet families, 272 probands in trios.
1124
ASD diagnosis: 89.5% autism; 8.5% PDD-NOS, 2% Asperger syndrome. Mean full-scale IQ 85.1 1.5 (mean verbal IQ, 81.9 1.7; mean non-verbal IQ, 88.4 1.4)
Mean, 9.1 yrs.
86.1% Male
161374
4
5
9
Controls
Cohort ID
Author, Year
Descripton
Cohort Size
Diagnosis
Age
Gender
CNV Size
Deletion
Duplication
Total CNV's
engchuan_15_ASD_discovery_controls
Platform-matched controls from three large studies: SAGE (Study of Addiction Genetics and Environment), Ontario Colorectal Cancer study, and HABC (Health Aging and Body Composition)
2342
Controls; subjects had no previous psychiatric history
N/A
46.67% Male
198718
1
2
3
krumm_15_ASD_discovery_controls
Unaffected siblings from quad families from the Simons Simplex Collection
1786
Control
N/A
N/A
0
0
0
0
levy_11_ASD_discovery_controls
Unaffected siblings of autistic probands from 887 families from the Simons Simplex Collection (SSC)
863
Control
47.97% Male
0
0
0
0
prasad_12_ASD_discovery_controls
PDx controls [1000 DNA samples from reportedly healthy donors (50.2% male) from BioServe (Beltsville, MD)] and 4139 in-house controls previously reported in Krawcak et al. 2006, Stewart et al. 2009, and Bierut et al. 2010. CNVs identified in controls were used to define rare ASD-specific CNVs.
5139
Control
NA
NA (PDx controls 50.2% male)
479954
0
0
0
sanders_11_ASD_discovery_controls
Matched siblings of autistic probands from the Simons Simplex Collection (SSC).
872
Controls
Mean, 10.0 yrs.
17833
5
2
7
Cases
Cohort ID
Geographical Ancestry
Discovery Method
Platform
Algorithm
Software
Validation Method
celestino-soper_11_ASD_discovery_cases
aCGH
Agilent 1M
ADM-2
Agilent Feature Extraction v10.7.3.1, Agilent DNA Analytics v4.0.76
None
engchuan_15_ASD_discovery_cases
Caucasian
Solid phase hybridization
Illumina 1M
None
gai_11_ASD_discovery_cases
European
Solid phase hybridization
Illumina Infinium II HumanHap550 BeadChip
BeadStudio 3.0
None
gazzellone_14_ASD_discovery_cases
Han Chinese
Array SNP
Affymetrix CytoScan HD
ChAS, iPattern, Nexus, Partek
None
krumm_15_ASD_discovery_cases
N/A
WES
CoNIFER, XHMM
Solid phase hybridization (Illumina 1M, 1 M Duo, or Omni 2.5)
levy_11_ASD_discovery_cases
aCGH
NimbleGen HD2
HMM
munnich_19_ASD_discovery_cases
France
aCGH, karyotyping
Agilent 60K
FISH
o'roak_12_ASD_discovery_cases
NA
WES
NimbleGen EZ Exome V2.0, Illumina GAIIx or HiSeq2000
HMM
mrsFAST aligner
aCGH, Sanger sequencing
prasad_12_ASD_discovery_cases
Canada
aCGH
Agilent 1M
ADM-2, DNAcopy (R Bioconductor)
DNA Analytics v4.0.85 (Agilent), DNAcopy
None
sanders_11_ASD_discovery_cases
White non-Hispanic, 74.5%; mixed, 9.3%, Asian, 4.3%, White Hispanic, 4.0%, African-American, 3.8%; other, 4.2&
Solid phase hybridization
Illumina 1M v1, Illumina 1M v3
PennCNV, QuantiSNP, GNOSIS
Controls
Cohort ID
Geographical Ancestry
Discovery Method
Platform
Algorithm
Software
Validation Method
engchuan_15_ASD_discovery_controls
Caucasian
Solid phase hybridization
Illumina 1M
None
krumm_15_ASD_discovery_controls
N/A
WES
CoNIFER, XHMM
None
levy_11_ASD_discovery_controls
aCGH
NimbleGen HD2
HMM
prasad_12_ASD_discovery_controls
NA
aCGH
Agilent 1M
ADM-2, DNAcopy (R Bioconductor)
DNA Analytics v4.0.85 (Agilent), DNAcopy
sanders_11_ASD_discovery_controls
Solid phase hybridization
Illumina 1M v1 or Illumina 1M v3
PennCNV, QuantiSNP, GNOSIS
Cases
Patient ID
Author, Year
Age
Gender
Primary Diagnosis
Clinical Profile
Cognitive Profile
CNV Start
CNV End
CNV Size
Genome Build
Type Method
Validation
celestino-soper_11_ASD_discovery_cases-11189
NA
M
ASD
NA
NA
209675066
209675939
874
GRCh38
Duplication
No
engchuan_15_ASD_discovery_cases-case5079_4
N/A
N/A
ASD
Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
210828735
211075201
246467
GRCh38
Deletion
No
gai_11_ASD_discovery_cases-AU1608301
Autism
205426690
205914499
487810
Unknown
Duplication
No
gai_11_ASD_discovery_cases-AU1608302
Autism
205426690
205914499
487810
Unknown
Duplication
No
gazzellone_14_ASD_discovery_cases-case691-3
N/A
M
ASD
ASD; no other clinical information provided
N/A
208340171
208382861
42691
GRCh38
Duplication
No
krumm_15_ASD_discovery_cases-case11707.p1
N/A
Male
ASD
Proband from the Simons Simplex Collection (SSC). Family type: Trio
207322381
207337409
15029
GRCh38
Duplication
Yes
levy_11_ASD_discovery_cases-11707.p1
NA
M
ASD
NA
NA
207223846
207356550
132705
GRCh38
Duplication
No
munnich_19_ASD_discovery_cases-case23
N/A
M
ASD
Case diagnosed with ASD based on DSM criteria. CNV detected by aCGH (Agilent 60K)
207607224
208122236
515013
GRCh38
Duplication
Yes
o'roak_12_ASD_discovery_cases-case11707.p1
NA
M
ASD/Autism
Case also identified with de novo PDCD1 frameshift mutation. No additional clinical info available.
Low IQ. Non verbal IQ, 23
207143817
207359669
215853
GRCh38
Duplication
Yes
prasad_12_ASD_discovery_cases-case129927
NA
M
ASD
Diagnosis of ASD based on meeting criteria on ADI-R and/or ADOS. Novel CNV
208660638
209140591
479954
Unknown
Duplication
No
sanders_11_ASD_discovery_cases-11208.p1
14.4
F
Autism
NA
Full-scale IQ, 141; non-verbal IQ, 128; verbal IQ, 149
208272455
208279636
7182
GRCh38
Duplication
No
sanders_11_ASD_discovery_cases-11371.p1
6.3
M
Autism
NA
Full-scale IQ, 78; non-verbal IQ, 84; verbal IQ 75
207522535
207683909
161375
GRCh38
Duplication
No
sanders_11_ASD_discovery_cases-11537.p1
14.3
F
Autism
NA
Full-scale IQ, 64; non-verbal IQ, 66; verbal IQ, 63
208272455
208283577
11123
GRCh38
Duplication
No
sanders_11_ASD_discovery_cases-11707.p1
13.5
M
Autism
NA
Full-scale IQ, 19; non-verbal IQ, 23; verbal IQ, 16
207230495
207359810
129316
GRCh38
Duplication
No
sanders_11_ASD_discovery_cases-11710.p1
6.1
M
Autism
NA
Full-scale IQ, 74; non-verbal IQ, 79; verbal IQ, 73
210432219
210440272
8054
GRCh38
Deletion
No
sanders_11_ASD_discovery_cases-12029.p1
8.6
M
Autism
NA
Full-scale IQ, 103; non-verbal IQ, 108; verbal IQ, 94
208272455
208283577
11123
GRCh38
Duplication
No
sanders_11_ASD_discovery_cases-12184.p1
12.9
F
Autism
NA
Full-scale IQ, 28; non-verbal IQ, 31; verbal IQ, 21
210432219
210440272
8054
GRCh38
Deletion
No
sanders_11_ASD_discovery_cases-12517.p1
13.4
M
Autism
NA
Full-scale IQ, 34; non-verbal IQ, 41; verbal IQ, 20
210422439
210440272
17834
GRCh38
Deletion
No
sanders_11_ASD_discovery_cases-12541.p1
6.5
M
Autism
NA
Full-scale IQ, 127; non-verbal IQ, 133; verbal IQ, 108
209328062
209332567
4506
GRCh38
Deletion
No
Controls
Patient ID
Author, Year
Age
Gender
Primary Diagnosis
Clinical Profile
Cognitive Profile
CNV Start
CNV End
CNV Size
Genome Build
Type Method
Validation
engchuan_15_ASD_discovery_controls-control110036017192_
N/A
N/A
Control
No previous psychiatric history
208610261
208808979
198719
GRCh38
Duplication
No
engchuan_15_ASD_discovery_controls-controlB147560_1007872587
N/A
N/A
Control
No previous psychiatric history
208411457
208515067
103611
GRCh38
Deletion
No
engchuan_15_ASD_discovery_controls-controlB669410_0067942584
N/A
N/A
Control
No previous psychiatric history
208890561
208950843
60283
GRCh38
Duplication
No
sanders_11_ASD_discovery_controls-11235.s1
4.8
M
Control (matched sibling)
NA
NA
210433436
210440272
6837
GRCh38
Deletion
No
sanders_11_ASD_discovery_controls-11537.s1
10.3
F
Control (matched sibling)
NA
NA
208272455
208279636
7182
GRCh38
Duplication
No
sanders_11_ASD_discovery_controls-12029.s1
12.6
M
Control (matched sibling)
NA
NA
208272455
208279636
7182
GRCh38
Duplication
No
sanders_11_ASD_discovery_controls-12541.s1
8.3
M
Control (matched sibling)
NA
NA
209328062
209332567
4506
GRCh38
Deletion
No
sanders_11_ASD_discovery_controls-12656.s1
16.3
M
Control (matched sibling)
NA
NA
209328062
209332567
4506
GRCh38
Deletion
No
sanders_11_ASD_discovery_controls-12972.s1
7.2
F
Control (matched sibling)
NA
NA
210432219
210440272
8054
GRCh38
Deletion
No
sanders_11_ASD_discovery_controls-13097.s1
12.4
F
Control (matched sibling)
NA
NA
210422439
210440272
17834
GRCh38
Deletion
No
Cases
Patient ID
Validation Description
Primary Disorder Inheritence
Inheritence
Family Profile
Disease Segregation
Gene Content
Altered Gene Expression
celestino-soper_11_ASD_discovery_cases-11189
Unknown
Simplex
NA
G0S2
engchuan_15_ASD_discovery_cases-case5079_4
Unknown
IPO8P1,KCNH1
gai_11_ASD_discovery_cases-AU1608301
Inherited
CD55, CR2, CR1, CR1L
gai_11_ASD_discovery_cases-AU1608302
Inherited
CD55, CR2, CR1, CR1L
gazzellone_14_ASD_discovery_cases-case691-3
Unknown
Unknown
Unknown
krumm_15_ASD_discovery_cases-case11707.p1
Illumina 1MDuo
Paternal
Simplex
Segregated
CD55
levy_11_ASD_discovery_cases-11707.p1
Paternal
Simplex
Segregated
C4BPAP2,CD55
munnich_19_ASD_discovery_cases-case23
FISH
Unknown
CDCA4P3,RNA5SP534,CDCA4P4,MIR29C,MIR29B2,CR1L,CD46P1,CD46,MIR29B2CHG,CD34,PLXNA2,CR1
o'roak_12_ASD_discovery_cases-case11707.p1
aCGH, Sanger sequencing
Paternal
Simplex (quad)
Unknown
C4BPAP2,C4BPA,C4BPAP1,CD55
prasad_12_ASD_discovery_cases-case129927
Unknown
Unknown
Unknown
HHAT,KCNH1
sanders_11_ASD_discovery_cases-11208.p1
Maternal
Simplex (quad-proband matched)
Segregated
sanders_11_ASD_discovery_cases-11371.p1
Paternal
Simplex (trio)
NA
CDCA4P3,CR1L,CD46P1,CR1
sanders_11_ASD_discovery_cases-11537.p1
Maternal
Simplex (quad-proband matched)
Not segregated
sanders_11_ASD_discovery_cases-11707.p1
Paternal
Simplex (quad-proband matched)
Segregated
CD55
sanders_11_ASD_discovery_cases-11710.p1
Paternal
Simplex (trio)
NA
HHAT
sanders_11_ASD_discovery_cases-12029.p1
Maternal
Simplex (quad-proband matched)
Not segregated
sanders_11_ASD_discovery_cases-12184.p1
Maternal
Simplex (quad-proband matched)
Segregated
HHAT
sanders_11_ASD_discovery_cases-12517.p1
Paternal
Simplex (quad-proband matched)
Not segregated
HHAT
sanders_11_ASD_discovery_cases-12541.p1
Unknown
Simplex (quad-proband matched)
Not segregated
LINC01696
Controls
Patient ID
Validation Description
Primary Disorder Inheritence
Inheritence
Family Profile
Disease Segregation
Gene Content
Altered Gene Expression
engchuan_15_ASD_discovery_controls-control110036017192_
Unknown
LINC01735,RPS26P13,LINC01717
engchuan_15_ASD_discovery_controls-controlB147560_1007872587
Unknown
engchuan_15_ASD_discovery_controls-controlB669410_0067942584
Unknown
sanders_11_ASD_discovery_controls-11235.s1
Paternal
Simplex (quad)
NA
HHAT
sanders_11_ASD_discovery_controls-11537.s1
Maternal
Simplex (quad)
NA
sanders_11_ASD_discovery_controls-12029.s1
Maternal
Simplex (quad)
NA
sanders_11_ASD_discovery_controls-12541.s1
Unknown
Simplex (quad)
NA
LINC01696
sanders_11_ASD_discovery_controls-12656.s1
Unknown
Simplex (quad)
NA
LINC01696
sanders_11_ASD_discovery_controls-12972.s1
Both parents
Simplex (quad)
NA
HHAT
sanders_11_ASD_discovery_controls-13097.s1
Unknown
Simplex (quad)
NA
HHAT
No Animal Model Data Available


