1q24.1-q25.1CNV Type: Deletion
Largest CNV size: 8564489 bp
Statistics Box:
Number of Reports: 2
Number of Reports: 2
Summary Information
Rare singleton deletion within this region was found in a case from a study of 15,749 individuals from the International Standards for Cytogenomic Arrays (ISCA) consortium with unexplained developmental delay, intellectual disability, dysmorphic features, multiple congenital anomalies, autism spectrum disorders, or clinical features suggestive of a chromosomal syndrome (Kaminsky et al., 2011).
Additional Locus Information
References
Major Reports
Title
Author, Year
Report Class
CNV Type
An evidence-based approach to establish the functional and clinical significance of copy number variants in intellectual and developmental disabili...
Deletion
Minor Reports
Title
Author, Year
Report Class
CNV Type
Chromosomal microarray in clinical diagnosis: a study of 337 patients with congenital anomalies and developmental delays or intellectual disability.
Deletion
Cases
Cohort ID
Author, Year
Descripton
Cohort Size
Diagnosis
Age
Gender
CNV Size
Deletion
Duplication
Total CNV's
kaminsky_11_DD/ID/ASD_discovery_cases
Cases from the International Standards for Cytogenomic Arrays (ISCA) consortium
15749
Unexplained developmental delay, intellectual disability, dysmorphic features, multiple congenital anomalies, autism spectrum disorders, or clinical features suggestive of a chromosomal syndrome
NA
NA
8564489
1
0
1
sansovic_17_DD/ID/ASD_discovery_cases
Unrelated patients from Croatia referred to the Department of Medical Genetics and Reproductive Health, Children's Hospital Zagreb, University of Zagreb School of Medicine
337
Cases diagnosed by clinical geneticists or pediatricians to have developmental delay/intellectual disability (DD/ID), ASD, congenital anomalies, or a combination of those features
Mean, 7 years (range, 1 month-25 years)
N/A
10356000
1
0
1
Controls
Cohort ID
Author, Year
Descripton
Cohort Size
Diagnosis
Age
Gender
CNV Size
Deletion
Duplication
Total CNV's
kaminsky_11_DD/ID/ASD_discovery_controls
Controls from the International Standards for Cytogenomic Arrays (ISCA) consortium
10118
Controls
NA
NA
NA
NA
NA
NA
Cases
Cohort ID
Geographical Ancestry
Discovery Method
Platform
Algorithm
Software
Validation Method
kaminsky_11_DD/ID/ASD_discovery_cases
NA
aCGH
Agilent 44K, Agilent 105K
Feature Extraction, DNA Analytics
FISH, qPCR, MLPA, aCGH, standard G-banded chromosome analysis
sansovic_17_DD/ID/ASD_discovery_cases
Croatia
aCGH
Agilent SurePrint G3 Unrestricted CGH ISCA v2
Agilent Feature Extraction (v12.0), Agilent CytoGenomics (v3.0 and v4.0)
None
Controls
Cohort ID
Geographical Ancestry
Discovery Method
Platform
Algorithm
Software
Validation Method
kaminsky_11_DD/ID/ASD_discovery_controls
NA
aCGH
Agilent 44K, Agilent 105K
Feature Extraction, DNA Analytics
Cases
Patient ID
Author, Year
Age
Gender
Primary Diagnosis
Clinical Profile
Cognitive Profile
CNV Start
CNV End
CNV Size
Genome Build
Type Method
Validation
kaminsky_11_DD/ID/ASD_discovery_cases-ISCA00003981
NA
NA
Developmental delay/intellectual disability/ASD
Clinical profile NA
Cognitive profile NA
166762832
175327423
8564592
GRCh38
Deletion
Yes
sansovic_17_DD/ID/ASD_discovery_cases-case5
5 yrs.
M
Developmental delay/intellectual disability
Developmental delay/intellectual disability, Congenital anomalies, Dysmorphism
166355810
176711856
10356047
GRCh38
Deletion
No
Controls
No Control Data Available
Cases
Patient ID
Validation Description
Primary Disorder Inheritence
Inheritence
Family Profile
Disease Segregation
Gene Content
Altered Gene Expression
kaminsky_11_DD/ID/ASD_discovery_cases-ISCA00003981
FISH, qPCR, MLPA, aCGH, or standard G-banded chromosome analysis
De novo
Unknown
Unknown
CNN2P10,DUTP6,RNA5SP65,AKR1D1P1,MIR1255B2,GCSHP5,RPL34P1,RNU6-1310P,MIR557,QRSL1P1,XCL1,SUMO1P2,RPL29P7,RNA5SP66,METTL18,RN7SL333P,RN7SL269P,MRPS10P1,SIGLEC30P,MIR3119-2,MIR3119-1,ISCUP1,HAUS4P1,MIR1295A,MIR1295B,HMGB1P11,SRP14P4,GM2AP2,CYCSP53,PFN1P1,RPL4P3,DNM3-IT1,DNM3OS,MIR214,MIR3120,MIR199A2,RNU6-157P,RNU6-693P,FASLG,SLC25A38P1,AIMP1P2,GOT2P2,PRDX6,TEX50,RN7SKP160,GAS5-AS1,RNA5SP67,RNA5SP68,RPL30P1,GPR52,BANF1P4,RABGAP1L-IT1,RNU6-307P,CACYBP,SDCCAG3P2,RPS29P4,FMO11P,TADA1,ILDR2,LINC01363,CREG1,MPC2,GPR161,TIPRL,SFT2D2,ANKRD36BP1,XCL2,DPT,LINC00626,ATP1B1,BLZF1,CCDC181,F5,SELL,METTL11B,LINC01681,LINC01142,GORAB,PRRX1,FMO3,FMO6P,FMO2,FMO1,FMO4,MYOCOS,MYOC,PIGC,C1orf105,SUCO,TNFSF18,TNFSF4,ANKRD45,KLHL20,DARS2,GAS5,ZBTB37,SERPINC1,RC3H1-IT1,MRPS14,KIAA0040,POGK,MAEL,GPA33,DUSP27,POU2F1,CD247,RCSD1,ADCY10,DCAF6,TBX19,LINC00970,NME7,SLC19A2,SELP,C1orf112,SELE,KIFAP3,MROH9,PRRC2C,VAMP4,SLC9C2,CENPL,RC3H1,RABGAP1L,NDUFAF4P4,TNR,SCYL3,DNM3,TNN,MPZL1
sansovic_17_DD/ID/ASD_discovery_cases-case5
De novo
RPL4P2,CNN2P10,DUTP6,RNA5SP65,AKR1D1P1,MIR1255B2,GCSHP5,RPL34P1,RNU6-1310P,MIR557,QRSL1P1,XCL1,SUMO1P2,RPL29P7,RNA5SP66,METTL18,RN7SL333P,RN7SL269P,MRPS10P1,SIGLEC30P,MIR3119-2,MIR3119-1,ISCUP1,HAUS4P1,MIR1295A,MIR1295B,HMGB1P11,SRP14P4,GM2AP2,CYCSP53,PFN1P1,RPL4P3,DNM3-IT1,DNM3OS,MIR214,MIR3120,MIR199A2,RNU6-157P,RNU6-693P,FASLG,SLC25A38P1,AIMP1P2,GOT2P2,PRDX6,TEX50,RN7SKP160,GAS5-AS1,RNA5SP67,RNA5SP68,RPL30P1,GPR52,BANF1P4,RABGAP1L-IT1,RNU6-307P,CACYBP,SDCCAG3P2,RPS29P4,LINC01657,RPS29P5,SCARNA3,RNU2-12P,MORF4L1P7,PTP4A1P7,FMO7P,LINC01675,FMO8P,FMO9P,FMO10P,FMO11P,TADA1,ILDR2,LINC01363,CREG1,MPC2,GPR161,TIPRL,SFT2D2,ANKRD36BP1,XCL2,DPT,LINC00626,ATP1B1,BLZF1,CCDC181,F5,SELL,METTL11B,LINC01681,LINC01142,GORAB,PRRX1,FMO3,FMO6P,FMO2,FMO1,FMO4,MYOCOS,MYOC,PIGC,C1orf105,SUCO,TNFSF18,TNFSF4,ANKRD45,KLHL20,DARS2,GAS5,ZBTB37,SERPINC1,RC3H1-IT1,MRPS14,KIAA0040,TNR-IT1,POGK,MAEL,GPA33,DUSP27,POU2F1,CD247,RCSD1,ADCY10,DCAF6,TBX19,LINC00970,NME7,SLC19A2,SELP,C1orf112,SELE,KIFAP3,MROH9,PRRC2C,VAMP4,SLC9C2,CENPL,RC3H1,RABGAP1L,NDUFAF4P4,TNR,PAPPA2,SCYL3,DNM3,TNN,MPZL1,COP1
Controls
No Control Data Available
No Animal Model Data Available