1p22.1CNV Type: Deletion-Duplication
Largest CNV size: 330607 bp
Statistics Box:
Number of Reports: 10
Number of Reports: 10
Summary Information
Summary statement in development
Additional Locus Information
References
Major Reports
Title
Author, Year
Report Class
CNV Type
An evidence-based approach to establish the functional and clinical significance of copy number variants in intellectual and developmental disabili...
Duplication
Both rare and de novo copy number variants are prevalent in agenesis of the corpus callosum but not in cerebellar hypoplasia or polymicrogyria.
Duplication
Excess of rare, inherited truncating mutations in autism.
Deletion-Duplication
Minor Reports
Title
Author, Year
Report Class
CNV Type
Multiple recurrent de novo CNVs, including duplications of the 7q11.23 Williams syndrome region, are strongly associated with autism.
Deletion-Duplication
Rare de novo and transmitted copy-number variation in autistic spectrum disorders.
Duplication
Use of array CGH to detect exonic copy number variants throughout the genome in autism families detects a novel deletion in TMLHE.
Duplication
Refinement and discovery of new hotspots of copy-number variation associated with autism spectrum disorder.
Duplication
Transmission disequilibrium of small CNVs in simplex autism.
Duplication
Genome-wide analysis of copy number variations identifies PARK2 as a candidate gene for autism spectrum disorder.
Duplication
Cases
Cohort ID
Author, Year
Descripton
Cohort Size
Diagnosis
Age
Gender
CNV Size
Deletion
Duplication
Total CNV's
celestino-soper_11_ASD_discovery_cases
ASD probands from Simons Simplex Collection (SSC) trios. 90 of the probands in this study were also used in the Sanders et al. 2011 CNV report.
99
ASD
87.88% Male
146
0
1
1
girirajan_13a_ASD_discovery_cases
1979 simplex cases from the Simons Simplex Collection (SSC), 579 multiplex cases from AGRE.
2588
Diagnosis of ASD based on meeting criteria on the Autism Diagnostic Observation Schedule (ADOS) and on the Autism Diagnostic Interview, Revised (ADI-R)
NA
NA
300000
0
1
1
kaminsky_11_DD/ID/ASD_discovery_cases
Cases from the International Standards for Cytogenomic Arrays (ISCA) consortium
15749
Unexplained developmental delay, intellectual disability, dysmorphic features, multiple congenital anomalies, autism spectrum disorders, or clinical features suggestive of a chromosomal syndrome
NA
NA
522334
0
2
2
krumm_13_ASD_discovery_cases
Probands from quad families ascertained as part of the Simons Simplex Collection (SSC); CNVs detected using data from four previously published exome sequencing studies (O'Roak et al., 2011; Iossifov et al., 2012; O'Roak et al., 2012; Sanders et al., 2012)
411
Diagnosis of ASD. Social Responsiveness Scale (SRS) used as a quantitative measure of social deficits
N/A
81.265% Male
310715
0
1
1
krumm_15_ASD_discovery_cases
Probands from the Simons Simplex Collection
2377
Diagnosis of ASD
N/A
N/A
344057
1
1
2
levy_11_ASD_discovery_cases
Autistic probands from 887 families from the Simons Simplex Collection (SSC)
858
ASD
87.06% Male
210403
0
1
1
maini_18_ASD/DD/ID_discovery_cases
Patients evaluated at the Clinical Genetics Unit of Arcispedale Santa Maria Nuova, AUSL-IRCCS of Reggio Emilia that were investigated through aCGH between 2005 and 2016
293
Cases presented with one or more neurodevelopmental disorders (NDD), multiple congenital anomalies (MCA), and/or dysmorphic features. Most frequent neurodevelopmental diagnoses include language delay (78.5%), intellectual disability (66.4%), motor delay (50.7%), and ASD (13.9%); dysmorphic features were also frequently observed (52.7%)
Mean age, 7 yrs. (range, 1 mo.-29 yrs.)
57.5% Male
490000
1
1
2
sajan_13_ACC/CBLH/PMG_discovery_cases
Individuals with severe congenital brain malformations [agenesis of the corpus callosum (ACC), cerebellar hypoplasia (CBLH), and/or polymicrogyria (PMG)] and additional neurodevelopmental phenotypes
487
Diagnosis of agenesis of the corpus callosum (ACC), cerebellar hypoplasia (CBLH), and/or polymicrogyria (PMG); additional diagnoses of autism spectrum disorder (ASD), developmental delay (DD), intellectual disability (ID) and/or seizures in some patients
N/A
N/A
221010
0
1
1
sanders_11_ASD_discovery_cases
Autistic probands from the Simons Simplex Collection (SSC). 872 probands in quartet families, 272 probands in trios.
1124
ASD diagnosis: 89.5% autism; 8.5% PDD-NOS, 2% Asperger syndrome. Mean full-scale IQ 85.1 1.5 (mean verbal IQ, 81.9 1.7; mean non-verbal IQ, 88.4 1.4)
Mean, 9.1 yrs.
86.1% Male
330607
7
2
9
yin_16_ASD_discovery_cases
Discovery cohort of ASD cases recruited from the Department of Psychiatry of National Taiwan University Hospital (NTUH), Chang Gung Memorial Hospital (CGMH), Taoyuan, and Taoyuan Mental Hospital (TMH), Taiwan.
335
Cases diagnosed with autistic disorder according to DSM-IV and confirmed by using the Chinese version of ADI-R. Cases' autistic behaviors assessed by Social Responsiveness Scale (SRS), and cognitive functions assessed by the Weschler Intelligence Scale for Children-Third Edition (WISC-III) and the Wisconsin Card Sorting Test (WCST).
Mean, 9.39 4.04 yrs.
89.3% Male
87578
0
2
2
Controls
Cohort ID
Author, Year
Descripton
Cohort Size
Diagnosis
Age
Gender
CNV Size
Deletion
Duplication
Total CNV's
engchuan_15_ASD_discovery_controls
Platform-matched controls from three large studies: SAGE (Study of Addiction Genetics and Environment), Ontario Colorectal Cancer study, and HABC (Health Aging and Body Composition)
2342
Controls; subjects had no previous psychiatric history
N/A
46.67% Male
204488
0
2
2
kaminsky_11_DD/ID/ASD_discovery_controls
Controls from the International Standards for Cytogenomic Arrays (ISCA) consortium
10118
Controls
NA
NA
NA
NA
NA
NA
krumm_13_ASD_discovery_controls
Unaffected siblings of ASD probands from quad families ascertained as part of the Simons Simplex Collection (SSC); CNVs detected using data from four previously published exome sequencing studies (O'Roak et al., 2011; Iossifov et al., 2012; O'Roak et al., 2012; Sanders et al., 2012)
411
Control (unaffected siblings of ASD probands). Social Responsiveness Scale (SRS) used as a quantitative measure of social deficits
N/A
46.47% Male
0
0
0
0
krumm_15_ASD_discovery_controls
Unaffected siblings from quad families from the Simons Simplex Collection
1786
Control
N/A
N/A
0
0
0
0
levy_11_ASD_discovery_controls
Unaffected siblings of autistic probands from 887 families from the Simons Simplex Collection (SSC)
863
Control
47.97% Male
0
0
0
0
sanders_11_ASD_discovery_controls
Matched siblings of autistic probands from the Simons Simplex Collection (SSC).
872
Controls
Mean, 10.0 yrs.
213070
6
0
6
yin_16_ASD_discovery_controls
Individuals from the Han Chinese Cell and Genome Bank (HCCGB) in Taiwan
1093
Controls
Mean, 68.07 10.12 yrs.
48.0% Male
87578
0
0
0
Cases
Cohort ID
Geographical Ancestry
Discovery Method
Platform
Algorithm
Software
Validation Method
celestino-soper_11_ASD_discovery_cases
aCGH
Agilent 1M
ADM-2
Agilent Feature Extraction v10.7.3.1, Agilent DNA Analytics v4.0.76
None
girirajan_13a_ASD_discovery_cases
NA
aCGH
Custom microarray with a high density of probes targeted to 1,367 regions with a susceptible genomic architecture
ADM-2
Agilent Genomic Workbench
None
kaminsky_11_DD/ID/ASD_discovery_cases
NA
aCGH
Agilent 44K, Agilent 105K
Feature Extraction, DNA Analytics
FISH, qPCR, MLPA, aCGH, standard G-banded chromosome analysis
krumm_13_ASD_discovery_cases
N/A
WES
Whole exome sequencing platforms used in four recent publications (O'Roak et al., 2011; Sanders et al., 2012; O'Roak et al., 2012, and Iossifov et al., 2012)
DNACopy, CGHCall
CoNIFER
None
krumm_15_ASD_discovery_cases
N/A
WES
CoNIFER, XHMM
Solid phase hybridization (Illumina 1M, 1 M Duo, or Omni 2.5)
levy_11_ASD_discovery_cases
aCGH
NimbleGen HD2
HMM
maini_18_ASD/DD/ID_discovery_cases
Italian
aCGH, array SNP
Multiple platforms, including Agilent and Affymetrix arrays (8x60K oligochips since 2012)
None
sajan_13_ACC/CBLH/PMG_discovery_cases
81.31% Caucasian
Solid phase hybridization
Illumina InfiniumII HumanHap610
PennCNV
qPCR
sanders_11_ASD_discovery_cases
White non-Hispanic, 74.5%; mixed, 9.3%, Asian, 4.3%, White Hispanic, 4.0%, African-American, 3.8%; other, 4.2&
Solid phase hybridization
Illumina 1M v1, Illumina 1M v3
PennCNV, QuantiSNP, GNOSIS
yin_16_ASD_discovery_cases
Han Chinese
Array SNP
Affymetrix 6.0
Affymetrix Genotyping Console v.4.1
None
Controls
Cohort ID
Geographical Ancestry
Discovery Method
Platform
Algorithm
Software
Validation Method
engchuan_15_ASD_discovery_controls
Caucasian
Solid phase hybridization
Illumina 1M
None
kaminsky_11_DD/ID/ASD_discovery_controls
NA
aCGH
Agilent 44K, Agilent 105K
Feature Extraction, DNA Analytics
krumm_13_ASD_discovery_controls
N/A
WES
Whole exome sequencing platforms used in four recent publications (O'Roak et al., 2011; Sanders et al., 2012; O'Roak et al., 2012, and Iossifov et al., 2012)
DNACopy, CGHCall
CoNIFER
None
krumm_15_ASD_discovery_controls
N/A
WES
CoNIFER, XHMM
None
levy_11_ASD_discovery_controls
aCGH
NimbleGen HD2
HMM
sanders_11_ASD_discovery_controls
Solid phase hybridization
Illumina 1M v1 or Illumina 1M v3
PennCNV, QuantiSNP, GNOSIS
yin_16_ASD_discovery_controls
Han Chinese
Array SNP
Affymetrix 6.0
Affymetrix Genotyping Console v.4.1
None
Cases
Patient ID
Author, Year
Age
Gender
Primary Diagnosis
Clinical Profile
Cognitive Profile
CNV Start
CNV End
CNV Size
Genome Build
Type Method
Validation
celestino-soper_11_ASD_discovery_cases-11345
NA
M
ASD
NA
NA
92704497
92704643
147
GRCh38
Duplication
No
girirajan_13a_ASD_discovery_cases-11000.p1
N/A
N/A
ASD
Diagnosis of ASD based on meeting criteria on the Autism Diagnostic Observation Schedule (ADOS) and on the Autism Diagnostic Interview, Revised (ADI-R)
N/A
91811855
92111855
300001
GRCh38
Duplication
No
kaminsky_11_DD/ID/ASD_discovery_cases-ISCA00002189
NA
NA
Developmental delay/intellectual disability/ASD
Clinical profile NA
Cognitive profile NA
91811903
92334237
522335
GRCh38
Duplication
Yes
kaminsky_11_DD/ID/ASD_discovery_cases-ISCA00002371
NA
NA
Developmental delay/intellectual disability/ASD
Clinical profile NA
Cognitive profile NA
92807868
92842656
34789
GRCh38
Duplication
Yes
krumm_13_ASD_discovery_cases-case11000.p1
N/A
M
ASD
ASD proband from SSC quad family 11000. SRS score of 70.
Full-scale IQ (FSIQ) score of 65.
91797286
92108001
310716
GRCh38
Duplication
No (not tested)
krumm_15_ASD_discovery_cases-case11000.p1
N/A
Male
ASD
Proband from the Simons Simplex Collection (SSC). Family type: Quad
91758612
92102669
344058
GRCh38
Duplication
Yes
krumm_15_ASD_discovery_cases-case11080.p1
N/A
Female
ASD
Proband from the Simons Simplex Collection (SSC). Family type: Trio
91975382
91977393
2012
GRCh38
Deletion
Yes
levy_11_ASD_discovery_cases-12019.p1
NA
M
ASD
NA
NA
91879588
92089990
210403
GRCh38
Duplication
No
maini_18_ASD/DD/ID_discovery_cases-case_unknown85
N/A
N/A
NDD/MCA/dysmorphic features
CNV was identified in an individual with one or more neurodevelopmental disorders (NDD), multiple congenital anomalies (MCA), and/or dysmorphic features (detailed clinical information was not available). CNV classified as variant of unknown significance-likely benign (VOUS-LB)
91775842
92264663
488822
GRCh38
Duplication
No
maini_18_ASD/DD/ID_discovery_cases-case_unknown86
N/A
N/A
NDD/MCA/dysmorphic features
CNV was identified in an individual with one or more neurodevelopmental disorders (NDD), multiple congenital anomalies (MCA), and/or dysmorphic features (detailed clinical information was not available). CNV classified as variant of unknown significance-likely benign (VOUS-LB)
93810772
94014576
203805
GRCh38
Deletion
No
sajan_13_ACC/CBLH/PMG_discovery_cases-case1512-0
N/A
N/A
ACC
Diagnosis of agenesis of the corpus callosum (ACC). ASD: no. Seizures: no.
Developmental delay: yes. Intellectual disability: no.
91900617
92121626
221010
GRCh38
Duplication
Yes
sanders_11_ASD_discovery_cases-11000.p1
9.2
M
Autism
NA
Full-scale IQ, 65; non-verbal IQ, 78; verbal IQ, 50
91791069
92121676
330608
GRCh38
Duplication
No
sanders_11_ASD_discovery_cases-11001.p1
7.8
M
Autism
NA
Full-scale IQ, 124; non-verbal IQ, 123; verbal IQ, 113
92725397
92758295
32899
GRCh38
Deletion
No
sanders_11_ASD_discovery_cases-11219.p1
8.8
M
Autism
NA
Full-scale IQ, 99; non-verbal IQ, 100; verbal IQ, 98
91775128
91784260
9133
GRCh38
Deletion
No
sanders_11_ASD_discovery_cases-11254.p1
9.8
M
Autism
NA
Full-scale IQ, 76; non-verbal IQ, 94; verbal IQ, 48
92113649
92138557
24909
GRCh38
Deletion
No
sanders_11_ASD_discovery_cases-11383.p1
7.1
M
Autism
NA
Full-scale IQ, 94; non-verbal IQ, 95; verbal IQ, 95
91768996
91782717
13722
GRCh38
Deletion
No
sanders_11_ASD_discovery_cases-12019.p1
9.1
M
ASD
NA
Full-scale IQ, 67; non-verbal IQ, 74; verbal IQ, 54
91880740
92085228
204489
GRCh38
Duplication
No
sanders_11_ASD_discovery_cases-12093.p1
6
M
ASD
NA
Full-scale IQ, 113; non-verbal IQ, 120; verbal IQ, 97
92588947
92797590
208644
GRCh38
Deletion
No
sanders_11_ASD_discovery_cases-12710.p1
4
M
Autism
NA
Full-scale IQ, 88; non-verbal IQ, 81; verbal IQ, 105
93711039
93839370
128332
GRCh38
Deletion
No
sanders_11_ASD_discovery_cases-12798.p1
4.8
M
Autism
NA
Full-scale IQ, 67; non-verbal IQ, 73; verbal IQ, 65
92588947
92793636
204690
GRCh38
Deletion
No
yin_16_ASD_discovery_cases-case24
N/A
N/A
ASD
Cases diagnosed with autistic disorder according to DSM-IV and confirmed by using the Chinese version of ADI-R.
93804772
93849487
44716
GRCh38
Duplication
No
yin_16_ASD_discovery_cases-case25
N/A
N/A
ASD
Cases diagnosed with autistic disorder according to DSM-IV and confirmed by using the Chinese version of ADI-R.
94021798
94109375
87578
GRCh38
Duplication
No
Controls
Patient ID
Author, Year
Age
Gender
Primary Diagnosis
Clinical Profile
Cognitive Profile
CNV Start
CNV End
CNV Size
Genome Build
Type Method
Validation
engchuan_15_ASD_discovery_controls-controlB467864_1007874035
N/A
N/A
Control
No previous psychiatric history
91858252
92040875
182624
GRCh38
Duplication
No
engchuan_15_ASD_discovery_controls-controlB986059_1007872554
N/A
N/A
Control
No previous psychiatric history
91880740
92085228
204489
GRCh38
Duplication
No
sanders_11_ASD_discovery_controls-11059.s1
9.3
F
Control (matched sibling)
NA
NA
93136637
93239253
102617
GRCh38
Deletion
No
sanders_11_ASD_discovery_controls-11219.s1
7
F
Control (matched sibling)
NA
NA
91775128
91783138
8011
GRCh38
Deletion
No
sanders_11_ASD_discovery_controls-12224.s1
6
M
Control (matched sibling)
NA
NA
92584520
92797590
213071
GRCh38
Deletion
No
sanders_11_ASD_discovery_controls-12380.s1
17
F
Control (matched sibling)
NA
NA
93713356
93816122
102767
GRCh38
Deletion
No
sanders_11_ASD_discovery_controls-12517.s1
11.7
M
Control (matched sibling)
NA
NA
93711039
93839370
128332
GRCh38
Deletion
No
sanders_11_ASD_discovery_controls-12764.s1
13.5
F
Control (matched sibling)
NA
NA
92584520
92797590
213071
GRCh38
Deletion
No
Cases
Patient ID
Validation Description
Primary Disorder Inheritence
Inheritence
Family Profile
Disease Segregation
Gene Content
Altered Gene Expression
celestino-soper_11_ASD_discovery_cases-11345
Unknown
Simplex
NA
EVI5
girirajan_13a_ASD_discovery_cases-11000.p1
Unknown
Simplex
Unknown
RN7SL653P,LPCAT2BP,SETSIP,EPHX4,TGFBR3,BRDT,BTBD8
kaminsky_11_DD/ID/ASD_discovery_cases-ISCA00002189
FISH, qPCR, MLPA, aCGH, or standard G-banded chromosome analysis
Unknown
Unknown
Unknown
RN7SL653P,LPCAT2BP,SETSIP,GAPDHP46,PRKAR1AP1,ACTBP12,EPHX4,C1orf146,RPAP2,TGFBR3,BRDT,BTBD8,GLMN
kaminsky_11_DD/ID/ASD_discovery_cases-ISCA00002371
FISH, qPCR, MLPA, aCGH, or standard G-banded chromosome analysis
Unknown
Unknown
Unknown
RPL5,SNORD21,SNORA66
krumm_13_ASD_discovery_cases-case11000.p1
Paternal
Simplex
Segregated
RN7SL653P,LPCAT2BP,SETSIP,EPHX4,TGFBR3,BRDT,BTBD8
krumm_15_ASD_discovery_cases-case11000.p1
Illumina 1M
Paternal
Simplex
Segregated
RN7SL653P,LPCAT2BP,SETSIP,EPHX4,TGFBR3,BRDT,BTBD8
krumm_15_ASD_discovery_cases-case11080.p1
Illumina 1MDuo
Paternal
Simplex
Segregated
BRDT
levy_11_ASD_discovery_cases-12019.p1
Paternal
Simplex
Segregated
LPCAT2BP,SETSIP,EPHX4,TGFBR3,BRDT,BTBD8
maini_18_ASD/DD/ID_discovery_cases-case_unknown85
Paternal
Unknown
Unknown
RN7SL653P,LPCAT2BP,SETSIP,GAPDHP46,PRKAR1AP1,ACTBP12,EPHX4,C1orf146,TGFBR3,BRDT,BTBD8,GLMN
maini_18_ASD/DD/ID_discovery_cases-case_unknown86
Unknown
Unknown
Unknown
MIR760,DNTTIP2,CHCHD2P5,MTND4P11,MTND3P21,MTCO3P21,MTATP6P13,MTCO2P21,MTCO1P21,GCLM,BCAR3,ABCA4
sajan_13_ACC/CBLH/PMG_discovery_cases-case1512-0
qPCR
Maternal
Unknown
Unknown
LPCAT2BP,SETSIP,GAPDHP46,EPHX4,TGFBR3,BRDT,BTBD8
sanders_11_ASD_discovery_cases-11000.p1
Paternal
Simplex (quad-proband matched)
Segregated
RN7SL653P,LPCAT2BP,SETSIP,GAPDHP46,EPHX4,TGFBR3,BRDT,BTBD8
sanders_11_ASD_discovery_cases-11001.p1
Unknown
Simplex (trio)
NA
CCNJP2,EVI5
sanders_11_ASD_discovery_cases-11219.p1
Maternal
Simplex (quad-proband matched)
Not segregated
TGFBR3
sanders_11_ASD_discovery_cases-11254.p1
Maternal
Simplex (quad-proband matched)
Not segregated
GAPDHP46,PRKAR1AP1,BTBD8
sanders_11_ASD_discovery_cases-11383.p1
Maternal
Simplex (quad-proband matched)
Not segregated
TGFBR3
sanders_11_ASD_discovery_cases-12019.p1
Paternal
Simplex (quad-proband unmatched)
Unknown
LPCAT2BP,SETSIP,EPHX4,TGFBR3,BRDT,BTBD8
sanders_11_ASD_discovery_cases-12093.p1
Unknown
Simplex (trio)
NA
HMGB3P9,RNU4-59P,CCNJP2,EVI5
sanders_11_ASD_discovery_cases-12710.p1
Unknown
Simplex (trio)
NA
BCAR3
sanders_11_ASD_discovery_cases-12798.p1
Unknown
Simplex (quad-proband matched)
Not segregated
HMGB3P9,RNU4-59P,CCNJP2,EVI5
yin_16_ASD_discovery_cases-case24
Unknown
Unknown
Unknown
MIR760,BCAR3
yin_16_ASD_discovery_cases-case25
Unknown
Unknown
Unknown
ABCA4
Controls
Patient ID
Validation Description
Primary Disorder Inheritence
Inheritence
Family Profile
Disease Segregation
Gene Content
Altered Gene Expression
engchuan_15_ASD_discovery_controls-controlB467864_1007874035
Unknown
EPHX4,TGFBR3,BRDT
engchuan_15_ASD_discovery_controls-controlB986059_1007872554
Unknown
LPCAT2BP,SETSIP,EPHX4,TGFBR3,BRDT,BTBD8
sanders_11_ASD_discovery_controls-11059.s1
Unknown
Simplex (quad)
NA
MTF2,TMED5,CCDC18
sanders_11_ASD_discovery_controls-11219.s1
Maternal
Simplex (quad)
NA
TGFBR3
sanders_11_ASD_discovery_controls-12224.s1
Unknown
Simplex (quad)
NA
HMGB3P9,RNU4-59P,CCNJP2,EVI5
sanders_11_ASD_discovery_controls-12380.s1
Unknown
Simplex (quad)
NA
BCAR3
sanders_11_ASD_discovery_controls-12517.s1
Unknown
Simplex (quad)
NA
BCAR3
sanders_11_ASD_discovery_controls-12764.s1
Maternal
Simplex (quad)
NA
HMGB3P9,RNU4-59P,CCNJP2,EVI5
No Animal Model Data Available


