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18q12.1CNV Type: Deletion-Duplication


Largest CNV size: 4062000 bp

Statistics Box:
Number of Reports: 17



Summary Information

A large ~4Mb duplication encompassing this region was recently detected in a 7-year-old female patient diagnosed with autistic disorder, mild intellectual disability, and additional phenotypes.

Additional Locus Information

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References

Major Reports

Title
Author, Year
Report Class
CNV Type
Structural variation of chromosomes in autism spectrum disorder.
Deletion-Duplication
An evidence-based approach to establish the functional and clinical significance of copy number variants in intellectual and developmental disabili...
Deletion-Duplication
Confirmation of chromosomal microarray as a first-tier clinical diagnostic test for individuals with developmental delay, intellectual disability, ...
Duplication
Genotype-phenotype analysis of 18q12.1-q12.2 copy number variation in autism.
Duplication
Both rare and de novo copy number variants are prevalent in agenesis of the corpus callosum but not in cerebellar hypoplasia or polymicrogyria.
Duplication
Convergence of genes and cellular pathways dysregulated in autism spectrum disorders.
Deletion
Performance of case-control rare copy number variation annotation in classification of autism.
Deletion-Duplication
Excess of rare, inherited truncating mutations in autism.
Deletion-Duplication

Minor Reports

Title
Author, Year
Report Class
CNV Type
Multiple recurrent de novo CNVs, including duplications of the 7q11.23 Williams syndrome region, are strongly associated with autism.
Deletion-Duplication
Use of array CGH to detect exonic copy number variants throughout the genome in autism families detects a novel deletion in TMLHE.
Deletion
A discovery resource of rare copy number variations in individuals with autism spectrum disorder.
Deletion-Duplication
Transmission disequilibrium of small CNVs in simplex autism.
Duplication
Copy number variation in Han Chinese individuals with autism spectrum disorder.
Duplication
The landscape of copy number variations in Finnish families with autism spectrum disorders.
Duplication
Copy-number variations are enriched for neurodevelopmental genes in children with developmental coordination disorder.
Deletion
YY1 Haploinsufficiency Causes an Intellectual Disability Syndrome Featuring Transcriptional and Chromatin Dysfunction.
Duplication
Prevalence and phenotypic impact of rare potentially damaging variants in autism spectrum disorder
Deletion

Cases

Cohort ID
Author, Year
Descripton
Cohort Size
Diagnosis
Age
Gender
CNV Size
Deletion
Duplication
Total CNV's
 battaglia_13_DD/ID/ASD_discovery_cases
 Patients affected by DD/ID/ASD/dysmorphic features of unknown origin observed at the Stella Maris Institute (Pisa, Italy) between May 2004 & December 2011
 349
 34 cases with borderline intellectual disability, 237 cases with mixed intellectual disability, 78 cases with intellectual disability and ASD (cases referred with a provisional diagnosis of ASD evaluated with ADI-R and ADOS-G)
 Range, 5 mos.-19 yrs.
 63.9% Male
 144000
 0
 2
 2
 celestino-soper_11_ASD_discovery_cases
 ASD probands from Simons Simplex Collection (SSC) trios. 90 of the probands in this study were also used in the Sanders et al. 2011 CNV report.
 99
 ASD
 
 87.88% Male
 3449
 1
 0
 1
 engchuan_15_ASD_discovery_cases
 Samples from the Autism Genome Project (AGP)
 1892
 Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
 N/A
 85.78% Male
 381193
 6
 9
 15
 gabriele_17_DD/ID_discovery_cases
 Individuals with deletions encompassing the YY1 gene identified within the DECIPHER database and an in-house database containing data from over 8,000 individuals with intellectual disability
 13
 Recurrent phenotypes of individuals with YY1 deletions included developmental delay, intellectual disability, intrauterine growth retardation, feeding problems, and dysmorphic features
 N/A
 N/A
 1440699
 0
 1
 1
 gazzellone_14_ASD_discovery_cases
 ASD-affected individuals referred to the Children Development and Behavior Research Center (CDRBC) at Harbin Medical University, China, between January 2007 and June 2011.
 104
 Diagnosis of ASD made using Autism Behavior Checklist (ABC) and Childhood Autism Rating Scale (CARS)
 Mean age at enrollment, 4.31 1.80 yrs.
 87.5% Male
 38751
 0
 1
 1
 kaminsky_11_DD/ID/ASD_discovery_cases
 Cases from the International Standards for Cytogenomic Arrays (ISCA) consortium
 15749
 Unexplained developmental delay, intellectual disability, dysmorphic features, multiple congenital anomalies, autism spectrum disorders, or clinical features suggestive of a chromosomal syndrome
 NA
 NA
 1848084
 2
 2
 4
 kanduri_15_ASD_discovery_cases
 Autistic cases from an initial sample of 83 Finnish families comprising 257 family members following quality control
 80
 Diagnosis of ASD based on DSM-IV, 4th edition, or ICD-10 criteria; patients screened based on Childhood Autism Rating Scale (CARS), Asperger Syndrome Screening Questionnaire, and Asperger's Syndrome Diagnostic Interview.
 N/A
 N/A
 180579
 0
 1
 1
 krumm_13_ASD_discovery_cases
 Probands from quad families ascertained as part of the Simons Simplex Collection (SSC); CNVs detected using data from four previously published exome sequencing studies (O'Roak et al., 2011; Iossifov et al., 2012; O'Roak et al., 2012; Sanders et al., 2012)
 411
 Diagnosis of ASD. Social Responsiveness Scale (SRS) used as a quantitative measure of social deficits
 N/A
 81.265% Male
 80983
 0
 1
 1
 krumm_15_ASD_discovery_cases
 Probands from the Simons Simplex Collection
 2377
 Diagnosis of ASD
 N/A
 N/A
 80983
 1
 3
 4
 mahjani_21_ASD_discovery_cases
 Study participants in the PAGES cohort, a large ongoing population-based cohort study in Sweden that started in 2012 with the overall aim to identify possible genetic and environmental risk factors for ASD.
 996
 Cases diagnosed with ASD according to ICD-9 and ICD-10 criteria.
 Average age at diagnosis, 8.2 yrs.
 70% Male
 1625484
 1
 0
 1
 marshall_08_ASD_discovery_cases
 Cohort of ASD families (237 simplex, 189 mulitplex) recruited from the Hospital for Sick Children, McMaster Univ., Memorial Univ., and other sites
 427
 ASD
 
 
 216869
 1
 1
 2
 mosca_16_DCD_discovery_cases
 Participants recruited as part of a multidisciplinary study at the Alberta Children's Hospital (Calgary, Alberta, Canada)
 82
 All cases met diagnostic criteria for developmental coordination disorder (DCD) with or without co-occurring ADHD and/or reading disorder.
 Range, 8-17 years (Mean, 10.06 2.92 yrs.)
 N/A
 27802
 1
 0
 1
 pinto_14_ASD_discovery_cases
 ASD probands from simplex and multiplex families collected as part of stage 2 of the Autism Genome Project (AGP) after quality control (1,604 before QC)
 1359
 Cases classified according to ADOS and ADI-R
 N/A
 N/A
 47253
 1
 0
 1
 prasad_12_ASD_discovery_cases
 Unrelated ASD cases recruited from three Canadian sites (Hospital for Sick Children, McMaster University, and Memorial University of Newfoundland); the majority of cases had been previously genotyped with results published in Marshall et al., 2008 and Pinto et al., 2010. 20 cases from initial cohort of 696 were excluded from further analysis (due to CNVs > 5 Mb).
 676
 Diagnosis of ASD based on meeting criteria on ADI-R and/or ADOS
 NA
 82.84% Male
 164485
 2
 3
 5
 sajan_13_ACC/CBLH/PMG_discovery_cases
 Individuals with severe congenital brain malformations [agenesis of the corpus callosum (ACC), cerebellar hypoplasia (CBLH), and/or polymicrogyria (PMG)] and additional neurodevelopmental phenotypes
 487
 Diagnosis of agenesis of the corpus callosum (ACC), cerebellar hypoplasia (CBLH), and/or polymicrogyria (PMG); additional diagnoses of autism spectrum disorder (ASD), developmental delay (DD), intellectual disability (ID) and/or seizures in some patients
 N/A
 N/A
 170483
 0
 1
 1
 sanders_11_ASD_discovery_cases
 Autistic probands from the Simons Simplex Collection (SSC). 872 probands in quartet families, 272 probands in trios.
 1124
 ASD diagnosis: 89.5% autism; 8.5% PDD-NOS, 2% Asperger syndrome. Mean full-scale IQ 85.1 1.5 (mean verbal IQ, 81.9 1.7; mean non-verbal IQ, 88.4 1.4)
 Mean, 9.1 yrs.
 86.1% Male
 431904
 20
 2
 22
 wang_13_ASD_discovery_cases
 Proband, who is one of a sibship of dizygotic twin girls born to non-consanguienous parents (both parents and the proband's dizygotic twin sister are neurologically unaffected), recruited through the Autism Spectrum Interdisciplinary Research (ASPIRE) Program of Autism Spectrum Disorders-Canadian-American Research Consortium (ASD-CARC).
 1
 Diagnosis of autistic disorder confirmed by ADOS-G and ADI-R and indicated by DSM-IV criteria.
 8 yrs.
 Female
 4062000
 0
 1
 1

Controls

Cohort ID
Author, Year
Descripton
Cohort Size
Diagnosis
Age
Gender
CNV Size
Deletion
Duplication
Total CNV's
 brandler_18_ASD_discovery_controls
 Unaffected individuals from the Relating Genes with Adolescent and Child Health (REACH) cohort (112 individuals from 311 families) and the Simons Simplex 1 (SSC1) cohort (518 controls from simplex quad families)
 630
 Control
 N/A
 N/A
 93
 1
 0
 1
 engchuan_15_ASD_discovery_controls
 Platform-matched controls from three large studies: SAGE (Study of Addiction Genetics and Environment), Ontario Colorectal Cancer study, and HABC (Health Aging and Body Composition)
 2342
 Controls; subjects had no previous psychiatric history
 N/A
 46.67% Male
 2217260
 4
 5
 9
 kaminsky_11_DD/ID/ASD_discovery_controls
 Controls from the International Standards for Cytogenomic Arrays (ISCA) consortium
 10118
 Controls
 NA
 NA
 NA
 NA
 NA
 NA
 kanduri_15_ASD_discovery_controls
 Unrelated Finnish samples from the cohort of Health 2000 survey from an initial sample of 288 individuals following quality control
 269
 Controls screened for DSM-IV mental disorders using the Composite International Diagnostic Interview and psychotic disorders using the research version of the Structured Clinical Interview for DSM-IV
 N/A
 N/A
 0
 0
 0
 0
 krumm_13_ASD_discovery_controls
 Unaffected siblings of ASD probands from quad families ascertained as part of the Simons Simplex Collection (SSC); CNVs detected using data from four previously published exome sequencing studies (O'Roak et al., 2011; Iossifov et al., 2012; O'Roak et al., 2012; Sanders et al., 2012)
 411
 Control (unaffected siblings of ASD probands). Social Responsiveness Scale (SRS) used as a quantitative measure of social deficits
 N/A
 46.47% Male
 0
 0
 0
 0
 krumm_15_ASD_discovery_controls
 Unaffected siblings from quad families from the Simons Simplex Collection
 1786
 Control
 N/A
 N/A
 78388
 1
 1
 2
 marshall_08_ASD_discovery_controls_1
 German PopGen project and entries from Database of Genomic Variants
 500
 Controls
 
 
 0
 0
 0
 0
 marshall_08_ASD_discovery_controls_2
 Non-disease controls from Ontario population
 1152
 Controls
 
 
 0
 0
 0
 0
 poultney_13_ASD_discovery_controls
 Controls matched for European ancestry from NIMH and CEPH retained after filtering (original cohort size of 379 controls)
 260
 Control
 N/A
 47.49% Male (before filtering)
 55821
 1
 0
 1
 prasad_12_ASD_discovery_controls
 PDx controls [1000 DNA samples from reportedly healthy donors (50.2% male) from BioServe (Beltsville, MD)] and 4139 in-house controls previously reported in Krawcak et al. 2006, Stewart et al. 2009, and Bierut et al. 2010. CNVs identified in controls were used to define rare ASD-specific CNVs.
 5139
 Control
 NA
 NA (PDx controls 50.2% male)
 164485
 0
 0
 0
 sanders_11_ASD_discovery_controls
 Matched siblings of autistic probands from the Simons Simplex Collection (SSC).
 872
 Controls
 Mean, 10.0 yrs.
 
 216344
 11
 2
 13

Cases

Cohort ID
Geographical Ancestry
Discovery Method
Platform
Algorithm
Software
Validation Method
 battaglia_13_DD/ID/ASD_discovery_cases
  Italy
 aCGH, array SNP
  BACs aCGH, Agilent 44K, Agilent 180K, Affymetrix 6.0
 
 
 FISH, qPCR
 celestino-soper_11_ASD_discovery_cases
 
 aCGH
  Agilent 1M
 ADM-2
 Agilent Feature Extraction v10.7.3.1, Agilent DNA Analytics v4.0.76
 None
 engchuan_15_ASD_discovery_cases
  Caucasian
 Solid phase hybridization
  Illumina 1M
 
 
 Yes
 gabriele_17_DD/ID_discovery_cases
  N/A
 aCGH, array SNP
  Agilent 44K, Agilent 60K, Agilent 400K, Affymetrix 250K NspI
 
 
 None
 gazzellone_14_ASD_discovery_cases
  Han Chinese
 Array SNP
  Affymetrix CytoScan HD
 ChAS, iPattern, Nexus, Partek
 
 None
 kaminsky_11_DD/ID/ASD_discovery_cases
  NA
 aCGH
  Agilent 44K, Agilent 105K
 
 Feature Extraction, DNA Analytics
 FISH, qPCR, MLPA, aCGH, standard G-banded chromosome analysis
 kanduri_15_ASD_discovery_cases
  Finnish
 Solid phase hybridization
  Illumina Human OmniExpress-12v1.0 BeadChip
 QuantiSNP, PennCNV
 Illumina BeadStudio
 None
 krumm_13_ASD_discovery_cases
  N/A
 WES
  Whole exome sequencing platforms used in four recent publications (O'Roak et al., 2011; Sanders et al., 2012; O'Roak et al., 2012, and Iossifov et al., 2012)
 DNACopy, CGHCall
 CoNIFER
 None
 krumm_15_ASD_discovery_cases
  N/A
 WES
 
 CoNIFER, XHMM
 
 Solid phase hybridization (Illumina 1M, 1 M Duo, or Omni 2.5)
 mahjani_21_ASD_discovery_cases
  Sweden
 WES
  Infinium OmniExpress Exome
 PennCNV
 NA
 None
 marshall_08_ASD_discovery_cases
  90% European, 4.5% European-mixed, 4.5% Asian, 0.07% African
 Array SNP, karotyping
  Affymetrix 500K
 dChip, CNAG, GEMCA
 
 qPCR, qmPCR
 mosca_16_DCD_discovery_cases
  Canada
 Solid phase hybridization
  Illumina HumanOmni2.5-Quad BeadChip
 iPattern, PennCNV, QuantiSNP, CNVPartition
 
 None
 pinto_14_ASD_discovery_cases
  Predominantly European
 Solid phase hybridization
  Illumina 1M (v.1 and v.3)
 
 
 qPCR, MLPA, long-range PCR
 prasad_12_ASD_discovery_cases
  Canada
 aCGH
  Agilent 1M
 ADM-2, DNAcopy (R Bioconductor)
 DNA Analytics v4.0.85 (Agilent), DNAcopy
 None
 sajan_13_ACC/CBLH/PMG_discovery_cases
  81.31% Caucasian
 Solid phase hybridization
  Illumina InfiniumII HumanHap610
 PennCNV
 
 qPCR
 sanders_11_ASD_discovery_cases
  White non-Hispanic, 74.5%; mixed, 9.3%, Asian, 4.3%, White Hispanic, 4.0%, African-American, 3.8%; other, 4.2&
 Solid phase hybridization
  Illumina 1M v1, Illumina 1M v3
 PennCNV, QuantiSNP, GNOSIS
 
 
 wang_13_ASD_discovery_cases
  European (mother French-German, father German)
 Array SNP
  Affymetrix 2.7M
 
 
 FISH

Controls

Cohort ID
Geographical Ancestry
Discovery Method
Platform
Algorithm
Software
Validation Method
  brandler_18_ASD_discovery_controls
  N/A
  WGS
  Illumina HiSeq X10 or HiSeq 2500
  ForestSV, Lumpy, Manta, Mobster, SV2
 
  PCR, array SNP
  engchuan_15_ASD_discovery_controls
  Caucasian
  Solid phase hybridization
  Illumina 1M
 
 
  None
  kaminsky_11_DD/ID/ASD_discovery_controls
  NA
  aCGH
  Agilent 44K, Agilent 105K
 
  Feature Extraction, DNA Analytics
 
  kanduri_15_ASD_discovery_controls
  Finnish
  Solid phase hybridization
  Illumina Infinium HD Human610-Quad BeadChip
  QuantiSNP, PennCNV
  Illumina BeadStudio
  None
  krumm_13_ASD_discovery_controls
  N/A
  WES
  Whole exome sequencing platforms used in four recent publications (O'Roak et al., 2011; Sanders et al., 2012; O'Roak et al., 2012, and Iossifov et al., 2012)
  DNACopy, CGHCall
  CoNIFER
  None
  krumm_15_ASD_discovery_controls
  N/A
  WES
 
  CoNIFER, XHMM
 
  Solid phase hybridization (Illumina 1M, 1 M Duo, or Omni 2.5)
  marshall_08_ASD_discovery_controls_1
  European
  Array SNP, karotyping
  Affymetrix 500K
  dChip, CNAG, GEMCA
 
 
  marshall_08_ASD_discovery_controls_2
  European
  Array SNP, karotyping
  Affymetrix 500K
  dChip, CNAG, GEMCA
 
 
  poultney_13_ASD_discovery_controls
  European
  WES
  Agilent SureSelect Human All Exon v.2
  XHMM
 
  None
  prasad_12_ASD_discovery_controls
  NA
  aCGH
  Agilent 1M
  ADM-2, DNAcopy (R Bioconductor)
  DNA Analytics v4.0.85 (Agilent), DNAcopy
 
  sanders_11_ASD_discovery_controls
 
  Solid phase hybridization
  Illumina 1M v1 or Illumina 1M v3
  PennCNV, QuantiSNP, GNOSIS
 
 

Cases

Patient ID
Author, Year
Age
Gender
Primary Diagnosis
Clinical Profile
Cognitive Profile
CNV Start
CNV End
CNV Size
Genome Build
Type Method
Validation
  battaglia_13_DD/ID/ASD_discovery_cases-case63
 14 yrs.
 M
 Developmental delay/intellectual disability
 Autism: no. Epilepsy: no. Dysmorphic features: yes.
 Moderate-mild DD/ID
 31894948
 32013582
  118635
 GRCh38
 Duplication
 Yes
  battaglia_13_DD/ID/ASD_discovery_cases-case65
 1 yr. 10 mos.
 M
 Developmental delay/intellectual disability
 Autism: no. Epilepsy: no. Dysmorphic features: yes.
 Mild DD/ID
 30202050
 30346712
  144663
 GRCh38
 Duplication
 Yes
  celestino-soper_11_ASD_discovery_cases-11091
 NA
 M
 ASD
 NA
 NA
 31336581
 31340030
  3450
 GRCh38
 Deletion
 No
  engchuan_15_ASD_discovery_cases-case13203_2203
 N/A
 N/A
 ASD
 Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
 
 31388408
 31471714
  83307
 GRCh38
 Duplication
 No
  engchuan_15_ASD_discovery_cases-case14050_870
 N/A
 N/A
 ASD
 Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
 
 30965604
 31022802
  57199
 GRCh38
 Duplication
 No
  engchuan_15_ASD_discovery_cases-case16030_1571003001
 N/A
 N/A
 ASD
 Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
 
 32343256
 32724449
  381194
 GRCh38
 Deletion
 No
  engchuan_15_ASD_discovery_cases-case16039_1571028001
 N/A
 N/A
 ASD
 Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
 
 33281192
 33350454
  69263
 GRCh38
 Deletion
 No
  engchuan_15_ASD_discovery_cases-case17023_1
 N/A
 N/A
 ASD
 Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
 
 27860294
 27950519
  90226
 GRCh38
 Duplication
 No
  engchuan_15_ASD_discovery_cases-case17033_1
 N/A
 N/A
 ASD
 Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
 
 31388408
 31471714
  83307
 GRCh38
 Duplication
 No
  engchuan_15_ASD_discovery_cases-case3309_3
 N/A
 N/A
 ASD
 Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
 
 31388408
 31471714
  83307
 GRCh38
 Duplication
 No
  engchuan_15_ASD_discovery_cases-case3477_3
 N/A
 N/A
 ASD
 Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
 
 34446298
 34493550
  47253
 GRCh38
 Deletion
 Yes
  engchuan_15_ASD_discovery_cases-case4137_1
 N/A
 N/A
 ASD
 Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
 
 31388408
 31469055
  80648
 GRCh38
 Duplication
 No
  engchuan_15_ASD_discovery_cases-case4304_1
 N/A
 N/A
 ASD
 Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
 
 29709296
 29769564
  60269
 GRCh38
 Deletion
 No
  engchuan_15_ASD_discovery_cases-case4383_1
 N/A
 N/A
 ASD
 Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
 
 32340467
 32383345
  42879
 GRCh38
 Deletion
 No
  engchuan_15_ASD_discovery_cases-case6284_3
 N/A
 N/A
 ASD
 Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
 
 31738266
 31797335
  59070
 GRCh38
 Duplication
 No
  engchuan_15_ASD_discovery_cases-case6301_3
 N/A
 N/A
 ASD
 Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
 
 31388408
 31471714
  83307
 GRCh38
 Duplication
 No
  engchuan_15_ASD_discovery_cases-case8484_201
 N/A
 N/A
 ASD
 Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
 
 31388408
 31471714
  83307
 GRCh38
 Duplication
 No
  engchuan_15_ASD_discovery_cases-case8607_201
 N/A
 N/A
 ASD
 Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
 
 28725722
 28809702
  83981
 GRCh38
 Deletion
 No
  gabriele_17_DD/ID_discovery_cases-case266323
 N/A
 N/A
 Intellectual disability
 Intrauterine growth retardation, microcephaly, hypotonia, feeding problems, malrotation, micropenis, hypoplastic scrotum, craniosynostosis, dysmorphic features
 Intellectual disability
 29444540
 30885237
  1440698
 GRCh38
 Duplication
 
  gazzellone_14_ASD_discovery_cases-case517-3
 6 yrs.
 F
 ASD
 ASD; no other clinical information provided
 N/A
 32058686
 32097437
  38752
 GRCh38
 Duplication
 No
  kaminsky_11_DD/ID/ASD_discovery_cases-ISCA00002434
 NA
 NA
 Developmental delay/intellectual disability/ASD
 Clinical profile NA
 Cognitive profile NA
 31016495
 31171928
  155434
 GRCh38
 Deletion
 Yes
  kaminsky_11_DD/ID/ASD_discovery_cases-ISCA00002575
 NA
 NA
 Developmental delay/intellectual disability/ASD
 Clinical profile NA
 Cognitive profile NA
 29444510
 31247986
  1803477
 GRCh38
 Duplication
 Yes
  kaminsky_11_DD/ID/ASD_discovery_cases-ISCA00004142
 NA
 NA
 Developmental delay/intellectual disability/ASD
 Clinical profile NA
 Cognitive profile NA
 34297872
 34622367
  324496
 GRCh38
 Deletion
 Yes
  kaminsky_11_DD/ID/ASD_discovery_cases-ISCA00005279
 NA
 NA
 Developmental delay/intellectual disability/ASD
 Clinical profile NA
 Cognitive profile NA
 29879161
 31727247
  1848087
 GRCh38
 Duplication
 Yes
  kanduri_15_ASD_discovery_cases-case3076
 N/A
 N/A
 ASD
 Diagnosis of ASD based on DSM-IV, 4th edition, or ICD-10 criteria; patient screened based on Childhood Autism Rating Scale (CARS), Asperger Syndrome Screening Questionnaire, and/or Asperger's Syndrome Diagnostic Interview.
 
 29374183
 29554761
  180579
 Unknown
 Duplication
 No
  krumm_13_ASD_discovery_cases-case12523.p1
 N/A
 M
 ASD
 ASD proband from SSC quad family 12523. SRS score of 49.
 Full-scale IQ (FSIQ) score of 91.
 31388366
 31469349
  80984
 GRCh38
 Duplication
 No (not tested)
  krumm_15_ASD_discovery_cases-case11573.p1
 N/A
 Male
 ASD
 Proband from the Simons Simplex Collection (SSC). Family type: Quad
 
 31388366
 31466754
  78389
 GRCh38
 Duplication
 Yes
  krumm_15_ASD_discovery_cases-case12523.p1
 N/A
 Male
 ASD
 Proband from the Simons Simplex Collection (SSC). Family type: Quad
 
 31388366
 31469349
  80984
 GRCh38
 Duplication
 Yes
  krumm_15_ASD_discovery_cases-case13311.p1
 N/A
 Male
 ASD
 Proband from the Simons Simplex Collection (SSC). Family type: Quad
 
 31001617
 31008525
  6909
 GRCh38
 Deletion
 Yes
  krumm_15_ASD_discovery_cases-case13666.p1
 N/A
 Female
 ASD
 Proband from the Simons Simplex Collection (SSC). Family type: Quad
 
 32065901
 32129205
  63305
 GRCh38
 Duplication
 Yes
  mahjani_21_ASD_discovery_cases-case206
 NA
 F
 ASD
 Diagnosis of ASD according to ICD-9 and ICD-10 criteria.
 
 32969578
 34595061
  1625484
 GRCh38
 Deletion
 No
  marshall_08_ASD_discovery_cases-SK0012-003
 NA
 M
 ASD
 NA
 NA
 31731071
 31947939
  216869
 GRCh38
 Duplication
 Yes
  marshall_08_ASD_discovery_cases-SK0303-003
 NA
 F
 ASD
 NA
 NA
 32549590
 32614139
  64550
 GRCh38
 Deletion
 Yes
  mosca_16_DCD_discovery_cases-case118703
 N/A
 F
 DCD (with or without ADHD and/or RD)
 Ancestry: unknown. Family history: maternal diagnosis unknown; paternal diagnosis unknown.
 
 28546284
 28574085
  27802
 GRCh38
 Deletion
 No
  pinto_14_ASD_discovery_cases2-case3477_3
 N/A
 M
 ASD
 ASD (ASD on ADI-R, autism on ADOS), verbal; no cardiac defects; no neuromuscular deficits. Family history: N/A.
 Low average IQ (WISC-R at 5 y 7 mo: VIQ 88, PIQ 88, FSIQ 86)
 34446298
 34493550
  47253
 GRCh38
 Deletion
 Yes
  prasad_12_ASD_discovery_cases-case58769L
 NA
 M
 ASD
 Diagnosis of ASD based on meeting criteria on ADI-R and/or ADOS. CNV identified by previous SNP microarray study
 
 27545371
 27709855
  164485
 Unknown
 Duplication
 No
  prasad_12_ASD_discovery_cases-case58769L
 NA
 M
 ASD
 Diagnosis of ASD based on meeting criteria on ADI-R and/or ADOS. Novel CNV
 
 30777967
 30822712
  44746
 Unknown
 Deletion
 No
  prasad_12_ASD_discovery_cases-case60980L
 NA
 M
 ASD
 Diagnosis of ASD based on meeting criteria on ADI-R and/or ADOS. CNV identified by previous SNP microarray study
 
 27902091
 27935104
  33014
 Unknown
 Duplication
 No
  prasad_12_ASD_discovery_cases-case78391
 NA
 F
 ASD
 Diagnosis of ASD based on meeting criteria on ADI-R and/or ADOS. CNV identified by previous SNP microarray study
 
 28375850
 28434244
  58395
 Unknown
 Deletion
 No
  prasad_12_ASD_discovery_cases-case80186
 NA
 M
 ASD
 Diagnosis of ASD based on meeting criteria on ADI-R and/or ADOS. Novel CNV
 
 25355324
 25395735
  40412
 Unknown
 Duplication
 No
  sajan_13_ACC/CBLH/PMG_discovery_cases-case1189-0
 N/A
 N/A
 ACC
 Diagnosis of agenesis of the corpus callosum (ACC). ASD: unknown. Seizures: unknown.
 Developmental delay: yes. Intellectual disability: unknown.
 33538018
 33708500
  170483
 GRCh38
 Duplication
 Yes
  sanders_11_ASD_discovery_cases-11202.p1
 11.8
 M
 Autism
 NA
 Full-scale IQ, 81; non-verbal IQ, 85; verbal IQ 71
 28596485
 28601429
  4945
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-11485.p1
 5.6
 M
 Autism
 NA
 Full-scale IQ, 78; non-verbal IQ, 75; verbal IQ, 63
 29894284
 29906310
  12027
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-11494.p1
 17.3
 M
 Autism
 NA
 Full-scale IQ, 108; non-verbal IQ, 107; verbal IQ, 109
 32989199
 33104040
  114842
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-11573.p1
 8.6
 M
 ASD
 NA
 Full-scale IQ, 68; non-verbal IQ, 85; verbal IQ, 51
 31388408
 31471714
  83307
 GRCh38
 Duplication
 No
  sanders_11_ASD_discovery_cases-11610.p1
 7.3
 M
 Autism
 NA
 Full-scale IQ, 127; non-verbal IQ, 138; verbal IQ, 99
 33616177
 33631295
  15119
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-11712.p1
 5.5
 M
 ASD
 NA
 Full-scale IQ, 79; non-verbal IQ, 94; verbal IQ, 60
 33200410
 33201020
  611
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-11723.p1
 6.9
 M
 ASD
 NA
 Full-scale IQ, 104; non-verbal IQ, 103; verbal IQ, 105
 32799909
 32845196
  45288
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-11792.p1
 10.5
 M
 Autism
 NA
 Full-scale IQ, 107; non-verbal IQ, 100; verbal IQ, 119
 29637357
 29642144
  4788
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-11913.p1
 4.5
 F
 Autism
 NA
 Full-scale IQ, 102; non-verbal IQ, 99; verbal IQ, 105
 32989199
 33117098
  127900
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-11962.p1
 6.3
 M
 Autism
 NA
 Full-scale IQ, 81; non-verbal IQ, 99; verbal IQ, 75
 30235355
 30236003
  649
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-11982.p1
 9.3
 M
 Autism
 NA
 Full-scale IQ, 79; non-verbal IQ, 78; verbal IQ, 86
 31064875
 31069249
  4375
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-11996.p1
 10
 M
 Autism
 NA
 Full-scale IQ, 77; non-verbal IQ, 85; verbal IQ, 54
 29091998
 29523901
  431904
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-12036.p1
 9.6
 M
 Autism
 NA
 Full-scale IQ, 52; non-verbal IQ, 54; verbal IQ, 48
 32989199
 33104040
  114842
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-12252.p1
 7.2
 M
 Autism
 NA
 Full-scale IQ, 87; non-verbal IQ, 79; verbal IQ, 106
 32980021
 33151784
  171764
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-12266.p1
 5.7
 M
 Autism
 NA
 Full-scale IQ, 58; non-verbal IQ, 65; verbal IQ, 54
 32989199
 33104040
  114842
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-12287.p1
 7.9
 M
 Autism
 NA
 Full-scale IQ, 43; non-verbal IQ, 55; verbal IQ, 28
 30574471
 30583347
  8877
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-12512.p1
 8.3
 M
 Autism
 NA
 Full-scale IQ, 85; non-verbal IQ, 82; verbal IQ, 95
 29637357
 29642144
  4788
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-12523.p1
 6.1
 M
 ASD
 NA
 Full-scale IQ, 91; non-verbal IQ, 91; verbal IQ, 95
 31388408
 31460006
  71599
 GRCh38
 Duplication
 No
  sanders_11_ASD_discovery_cases-12558.p1
 10.5
 M
 Autism
 NA
 Full-scale IQ, 81; non-verbal IQ, 95; verbal IQ, 51
 32989199
 33036815
  47617
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-12741.p1
 7.8
 M
 Autism
 NA
 Full-scale IQ, 74; non-verbal IQ, 87; verbal IQ, 60
 29637357
 29642144
  4788
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-12858.p1
 4.2
 F
 Autism
 NA
 Full-scale IQ, 91; non-verbal IQ, 99; verbal IQ, 83
 32383345
 32408288
  24944
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-13019.p1
 5.1
 M
 Autism
 NA
 Full-scale IQ, 36; non-verbal IQ, 52; verbal IQ, 20
 32989199
 33201020
  211822
 GRCh38
 Deletion
 No
  wang_13_ASD_discovery_cases-case1
 8 yrs.
 F
 Autistic disorder
 Diagnosis of autistic disorder at age of 2 years 11 months confirmed by ADOS-G and ADI-R and indicated by DSM-IV criteria. Birth/neonatal history: conception aided by ovulation induction; proband born at 37 weeks gestation by C-section, no concerns noted at birth. Developmental milestones: speech assessments at age of 2 years 8 months showed major expressive speech delay in addition to delays in reception, play, and gesture. Language and communication evaluation: significant deficits in verbal and non-verbal communication noted in association with poor eye contact and limited use of gestures and facial expression; case non-verbal upon most recent evaluation. Behavioral/psychiatric evaluation: stereotypic and repetitive behaviors observed (hand flapping and blinking). Epilepsy/seizures: recurrent focal seizures developed at 5 years of age, effectively treated with lamotrigine. EEG: normal (performed during wakefulness). Brain imaging: normal brain MRI. Ophthalmologic evaluation: mild myopia. Auditory evaluation: auditory brainstem response (ABR) testing performed at age of 2 years 6 months ruled out hearing loss. Other features: bilateral benign iris nevi. Dysmorphic features: none. Growth parameters: relatively short stature; weight 25th %ile, height 5th %ile, OFC 50th %ile. Karyotype: normal female karyotype observed prenatally. Family history: healthy dizygotic twin sister; born to healthy non-consanguineous parents; paternal half-cousin with Asperger syndrome harboring paternally-inherited 16p13.2 microduplication detected by CMA.
 Mild intellectual disability; evidence of cognitive delays awaiting objective IQ testing; overall functioning at age of 8 years was equivalent to a 3-4-year-old.
 30753736
 34815318
  4061583
 GRCh38
 Duplication
 Yes

Controls

Patient ID
Author, Year
Age
Gender
Primary Diagnosis
Clinical Profile
Cognitive Profile
CNV Start
CNV End
CNV Size
Genome Build
Type Method
Validation
  brandler_18_ASD_discovery_controls-controlREACH000572
  N/A
  F
  Control
  Control from REACH cohort
 
  30614291
  30614384
  94
  GRCh38
  Deletion
  Yes
  engchuan_15_ASD_discovery_controls-control110036019552_
  N/A
  N/A
  Control
  No previous psychiatric history
 
  31388408
  31471714
  83307
  GRCh38
  Duplication
  No
  engchuan_15_ASD_discovery_controls-control110036023638_
  N/A
  N/A
  Control
  No previous psychiatric history
 
  30205205
  30345131
  139927
  GRCh38
  Duplication
  No
  engchuan_15_ASD_discovery_controls-controlB294025_1007842040
  N/A
  N/A
  Control
  No previous psychiatric history
 
  28495623
  28562092
  66470
  GRCh38
  Deletion
  No
  engchuan_15_ASD_discovery_controls-controlB340331_1007844528
  N/A
  N/A
  Control
  No previous psychiatric history
 
  32799909
  32845196
  45288
  GRCh38
  Deletion
  No
  engchuan_15_ASD_discovery_controls-controlB475222_1007872252
  N/A
  N/A
  Control
  No previous psychiatric history
 
  28725722
  28804325
  78604
  GRCh38
  Deletion
  No
  engchuan_15_ASD_discovery_controls-controlB736147_1007871696
  N/A
  N/A
  Control
  No previous psychiatric history
 
  29809578
  29886212
  76635
  GRCh38
  Duplication
  No
  engchuan_15_ASD_discovery_controls-controlB843300_1007874699
  N/A
  N/A
  Control
  No previous psychiatric history
 
  28199559
  30416817
  2217259
  GRCh38
  Deletion
  No
  engchuan_15_ASD_discovery_controls-controlHABC_900402_900402
  N/A
  N/A
  Control
  No previous psychiatric history
 
  31388408
  31471714
  83307
  GRCh38
  Duplication
  No
  engchuan_15_ASD_discovery_controls-controlHABC_902827_902827
  N/A
  N/A
  Control
  No previous psychiatric history
 
  31388408
  31461771
  73364
  GRCh38
  Duplication
  No
  krumm_15_ASD_discovery_controls-control11573.s1
  N/A
  Female
  Control
  Unaffected sibling from the Simons Simplex Collection (SSC)
 
  31388366
  31466754
  78389
  GRCh38
  Duplication
  Yes
  krumm_15_ASD_discovery_controls-control13311.s1
  N/A
  Female
  Control
  Unaffected sibling from the Simons Simplex Collection (SSC)
 
  31001617
  31008525
  6909
  GRCh38
  Deletion
  Yes
  poultney_13_ASD_discovery_controls-control04C27734A
  N/A
  F
  Control
  NIMH Control (NIMH ID 28812)
 
  33293157
  33348977
  55821
  GRCh38
  Deletion
  No
  sanders_11_ASD_discovery_controls-11135.s1
  12.9
  F
  Control (matched sibling)
  NA
  NA
  32246624
  32252184
  5561
  GRCh38
  Deletion
  No
  sanders_11_ASD_discovery_controls-11256.s1
  14
  M
  Control (matched sibling)
  NA
  NA
  29637357
  29642144
  4788
  GRCh38
  Deletion
  No
  sanders_11_ASD_discovery_controls-11573.s1
  10.3
  F
  Control (matched sibling)
  NA
  NA
  31388408
  31467004
  78597
  GRCh38
  Duplication
  No
  sanders_11_ASD_discovery_controls-11917.s1
  4.3
  F
  Control (matched sibling)
  NA
  NA
  32390023
  32393768
  3746
  GRCh38
  Deletion
  No
  sanders_11_ASD_discovery_controls-11918.s1
  12.3
  M
  Control (matched sibling)
  NA
  NA
  31750251
  31759008
  8758
  GRCh38
  Deletion
  No
  sanders_11_ASD_discovery_controls-12154.s1
  9.1
  F
  Control (matched sibling)
  NA
  NA
  32616841
  32626247
  9407
  GRCh38
  Deletion
  No
  sanders_11_ASD_discovery_controls-12252.s1
  4.1
  M
  Control (matched sibling)
  NA
  NA
  32984676
  33201020
  216345
  GRCh38
  Deletion
  No
  sanders_11_ASD_discovery_controls-12512.s1
  11.3
  F
  Control (matched sibling)
  NA
  NA
  29637357
  29642144
  4788
  GRCh38
  Deletion
  No
  sanders_11_ASD_discovery_controls-12582.s1
  9.2
  M
  Control (matched sibling)
  NA
  NA
  32376511
  32408288
  31778
  GRCh38
  Deletion
  No
  sanders_11_ASD_discovery_controls-12810.s1
  13.7
  F
  Control (matched sibling)
  NA
  NA
  32367954
  32411107
  43154
  GRCh38
  Deletion
  No
  sanders_11_ASD_discovery_controls-13083.s1
  9.8
  F
  Control (matched sibling)
  NA
  NA
  31827094
  31953319
  126226
  GRCh38
  Duplication
  No
  sanders_11_ASD_discovery_controls-13195.s1
  10.1
  M
  Control (matched sibling)
  NA
  NA
  32918334
  32921761
  3428
  GRCh38
  Deletion
  No
  sanders_11_ASD_discovery_controls-13233.s1
  10.5
  F
  Control (matched sibling)
  NA
  NA
  32989199
  33104040
  114842
  GRCh38
  Deletion
  No

Cases

Patient ID
Validation Description
Primary Disorder Inheritence
Inheritence
Family Profile
Disease Segregation
Gene Content
Altered Gene Expression
 battaglia_13_DD/ID/ASD_discovery_cases-case63
 FISH or qPCR
 Maternal
 Maternal
 Possible multi-generational
 Segregated
 RNU6-1050P,PGDP1,TRAPPC8
 
 battaglia_13_DD/ID/ASD_discovery_cases-case65
 FISH or qPCR
 Maternal
 Maternal
 Possible multi-generational
 Segregated
 MIR302F
 
 celestino-soper_11_ASD_discovery_cases-11091
 
 
 Unknown
 Simplex
 NA
 DSG1
 
 engchuan_15_ASD_discovery_cases-case13203_2203
 
 
 Unknown
 
 
 DSG1-AS1,DSG4,DSG3
 
 engchuan_15_ASD_discovery_cases-case14050_870
 
 
 Unknown
 
 
 RNU6-857P,DSC3
 
 engchuan_15_ASD_discovery_cases-case16030_1571003001
 
 
 Unknown
 
 
 HNRNPA1P7,WBP11P1,GAREM1,KLHL14
 
 engchuan_15_ASD_discovery_cases-case16039_1571028001
 
 
 Unknown
 
 
 CCDC178
 
 engchuan_15_ASD_discovery_cases-case17023_1
 
 
 Unknown
 
 
 
 
 engchuan_15_ASD_discovery_cases-case17033_1
 
 
 Unknown
 
 
 DSG1-AS1,DSG4,DSG3
 
 engchuan_15_ASD_discovery_cases-case3309_3
 
 
 Unknown
 
 
 DSG1-AS1,DSG4,DSG3
 
 engchuan_15_ASD_discovery_cases-case3477_3
 
 
 De novo
 
 
 DTNA
 
 engchuan_15_ASD_discovery_cases-case4137_1
 
 
 Unknown
 
 
 DSG1-AS1,DSG4,DSG3
 
 engchuan_15_ASD_discovery_cases-case4304_1
 
 
 Unknown
 
 
 
 
 engchuan_15_ASD_discovery_cases-case4383_1
 
 
 Unknown
 
 
 GAREM1
 
 engchuan_15_ASD_discovery_cases-case6284_3
 
 
 Unknown
 
 
 SLC25A52
 
 engchuan_15_ASD_discovery_cases-case6301_3
 
 
 Unknown
 
 
 DSG1-AS1,DSG4,DSG3
 
 engchuan_15_ASD_discovery_cases-case8484_201
 
 
 Unknown
 
 
 DSG1-AS1,DSG4,DSG3
 
 engchuan_15_ASD_discovery_cases-case8607_201
 
 
 Unknown
 
 
 
 
 gabriele_17_DD/ID_discovery_cases-case266323
 
 
 Unknown
 
 Unknown
 MIR302F
 
 gazzellone_14_ASD_discovery_cases-case517-3
 
 
 Unknown
 Unknown
 Unknown
 RNF125,RNF138
 
 kaminsky_11_DD/ID/ASD_discovery_cases-ISCA00002434
 FISH, qPCR, MLPA, aCGH, or standard G-banded chromosome analysis
 
 Unknown
 Unknown
 Unknown
 DSC3,DSCAS,DSC1,DSC2
 
 kaminsky_11_DD/ID/ASD_discovery_cases-ISCA00002575
 FISH, qPCR, MLPA, aCGH, or standard G-banded chromosome analysis
 
 Maternal
 Unknown
 Unknown
 MIR302F,RNU6-857P,DSC3,DSCAS,DSC1,DSC2
 
 kaminsky_11_DD/ID/ASD_discovery_cases-ISCA00004142
 FISH, qPCR, MLPA, aCGH, or standard G-banded chromosome analysis
 
 Unknown
 Unknown
 Unknown
 DTNA
 
 kaminsky_11_DD/ID/ASD_discovery_cases-ISCA00005279
 FISH, qPCR, MLPA, aCGH, or standard G-banded chromosome analysis
 
 Maternal
 Unknown
 Unknown
 MIR302F,RNU6-857P,RNU6-167P,RN7SKP44,LRRC37A7P,DSC3,DSCAS,DSC1,DSG1-AS1,DSG4,DSG2,DSG2-AS1,B4GALT6,DSC2,DSG1,TTR,DSG3
 
 kanduri_15_ASD_discovery_cases-case3076
 
 
 Paternal
 Unknown
 Unknown
 TRAPPC8
 
 krumm_13_ASD_discovery_cases-case12523.p1
 
 
 Paternal
 Simplex
 Segregated
 DSG1-AS1,DSG4,DSG3
 
 krumm_15_ASD_discovery_cases-case11573.p1
 Illumina 1MDuo
 
 Maternal
 Simplex
 Not segregated (CNV in unaffected sibling)
 DSG1-AS1,DSG4,DSG3
 
 krumm_15_ASD_discovery_cases-case12523.p1
 Illumina 1MDuo
 
 Paternal
 Simplex
 Segregated
 DSG1-AS1,DSG4,DSG3
 
 krumm_15_ASD_discovery_cases-case13311.p1
 1M-Duov3
 
 Maternal
 Simplex
 Not segregated (CNV in unaffected sibling)
 DSC3
 
 krumm_15_ASD_discovery_cases-case13666.p1
 Omni2.5-4v1
 
 Maternal
 Simplex
 Segregated
 RNF125,RNF138,GAREM1
 
 mahjani_21_ASD_discovery_cases-case206
 
 
 Unknown
 
 
 DTNA,ASXL3,CCDC178,NOL4,ASXL3-DT
 
 marshall_08_ASD_discovery_cases-SK0012-003
 qPCR, qmPCR
 
 Unknown
 NA
 NA
 SLC25A52,RNU6-1050P,TRAPPC8
 
 marshall_08_ASD_discovery_cases-SK0303-003
 qPCR, qmPCR
 
 Unknown
 NA
 NA
 
 
 mosca_16_DCD_discovery_cases-case118703
 
 
 Unknown
 Unknown
 Unknown
 
 
 pinto_14_ASD_discovery_cases2-case3477_3
 qPCR
 
 De novo
 Simplex
 Segregated (absent in unaffected brother)
 DTNA
 
 prasad_12_ASD_discovery_cases-case58769L
 
 
 Unknown
 Unknown
 Unknown
 TRAPPC8,MCART2
 
 prasad_12_ASD_discovery_cases-case58769L
 
 
 Unknown
 Unknown
 Unknown
 MAPRE2
 
 prasad_12_ASD_discovery_cases-case60980L
 
 
 Unknown
 Unknown
 Unknown
 RNF138,RNF125
 
 prasad_12_ASD_discovery_cases-case78391
 
 
 Unknown
 Unknown
 Unknown
 0 genes
 
 prasad_12_ASD_discovery_cases-case80186
 
 
 Unknown
 Unknown
 Unknown
 0 genes
 
 sajan_13_ACC/CBLH/PMG_discovery_cases-case1189-0
 qPCR
 
 Paternal
 Unknown
 Unknown
 ASXL3
 
 sanders_11_ASD_discovery_cases-11202.p1
 
 
 Maternal
 Simplex (trio)
 NA
 
 
 sanders_11_ASD_discovery_cases-11485.p1
 
 
 Maternal
 Simplex (quad-proband matched)
 Not segregated
 
 
 sanders_11_ASD_discovery_cases-11494.p1
 
 
 Unknown
 Simplex (quad-proband matched)
 Segregated
 CCDC178
 
 sanders_11_ASD_discovery_cases-11573.p1
 
 
 Maternal
 Simplex (quad-proband matched)
 Not segregated
 DSG1-AS1,DSG4,DSG3
 
 sanders_11_ASD_discovery_cases-11610.p1
 
 
 Unknown
 Simplex (quad-proband matched)
 Not segregated
 ASXL3
 
 sanders_11_ASD_discovery_cases-11712.p1
 
 
 Unknown
 Simplex (quad-proband matched)
 Not segregated
 CCDC178
 
 sanders_11_ASD_discovery_cases-11723.p1
 
 
 Paternal
 Simplex (quad-proband matched)
 Not segregated
 
 
 sanders_11_ASD_discovery_cases-11792.p1
 
 
 Paternal
 Simplex (quad-proband matched)
 Not segregated
 
 
 sanders_11_ASD_discovery_cases-11913.p1
 
 
 Unknown
 Simplex (quad-proband matched)
 Not segregated
 CCDC178
 
 sanders_11_ASD_discovery_cases-11962.p1
 
 
 Paternal
 Simplex (quad-proband matched)
 Not segregated
 
 
 sanders_11_ASD_discovery_cases-11982.p1
 
 
 Paternal
 Simplex (quad-proband matched)
 Not segregated
 DSC2
 
 sanders_11_ASD_discovery_cases-11996.p1
 
 
 Maternal
 Simplex (trio)
 NA
 
 
 sanders_11_ASD_discovery_cases-12036.p1
 
 
 Unknown
 Simplex (quad-proband matched)
 Not segregated
 CCDC178
 
 sanders_11_ASD_discovery_cases-12252.p1
 
 
 Unknown
 Simplex (quad-proband matched)
 Not segregated
 CCDC178
 
 sanders_11_ASD_discovery_cases-12266.p1
 
 
 Unknown
 Simplex (trio)
 NA
 CCDC178
 
 sanders_11_ASD_discovery_cases-12287.p1
 
 
 Paternal
 Simplex (trio)
 NA
 
 
 sanders_11_ASD_discovery_cases-12512.p1
 
 
 Maternal
 Simplex (quad-proband matched)
 Not segregated
 
 
 sanders_11_ASD_discovery_cases-12523.p1
 
 
 Paternal
 Simplex (quad-proband matched)
 Segregated
 DSG1-AS1,DSG4,DSG3
 
 sanders_11_ASD_discovery_cases-12558.p1
 
 
 Unknown
 Simplex (trio)
 NA
 CCDC178
 
 sanders_11_ASD_discovery_cases-12741.p1
 
 
 Paternal
 Simplex (quad-proband matched)
 Not segregated
 
 
 sanders_11_ASD_discovery_cases-12858.p1
 
 
 Unknown
 Simplex (quad-proband matched)
 Not segregated
 GAREM1
 
 sanders_11_ASD_discovery_cases-13019.p1
 
 
 Unknown
 Simplex (trio)
 NA
 CCDC178
 
 wang_13_ASD_discovery_cases-case1
 FISH
 
 De novo
 Simplex
 Segregated
 RNU6-857P,RNU6-167P,RN7SKP44,LRRC37A7P,SLC25A52,RNU6-1050P,PGDP1,RNA5SP453,CLUHP6,HNRNPA1P7,WBP11P1,DSC3,DSCAS,DSC1,DSG1-AS1,DSG4,DSG2,DSG2-AS1,B4GALT6,RNF125,MEP1B,DSC2,DSG1,TTR,TRAPPC8,RNF138,GAREM1,KLHL14,CCDC178,ASXL3,NOL4,DSG3,DTNA
 

Controls

Patient ID
Validation Description
Primary Disorder Inheritence
Inheritence
Family Profile
Disease Segregation
Gene Content
Altered Gene Expression
brandler_18_ASD_discovery_controls-controlREACH000572
  PCR
 
  De novo
 
 
 
 
engchuan_15_ASD_discovery_controls-control110036019552_
 
 
  Unknown
 
 
  DSG1-AS1,DSG4,DSG3
 
engchuan_15_ASD_discovery_controls-control110036023638_
 
 
  Unknown
 
 
  MIR302F
 
engchuan_15_ASD_discovery_controls-controlB294025_1007842040
 
 
  Unknown
 
 
 
 
engchuan_15_ASD_discovery_controls-controlB340331_1007844528
 
 
  Unknown
 
 
 
 
engchuan_15_ASD_discovery_controls-controlB475222_1007872252
 
 
  Unknown
 
 
 
 
engchuan_15_ASD_discovery_controls-controlB736147_1007871696
 
 
  Unknown
 
 
 
 
engchuan_15_ASD_discovery_controls-controlB843300_1007874699
 
 
  Unknown
 
 
  ARIH2P1,RNU6-408P,MIR302F
 
engchuan_15_ASD_discovery_controls-controlHABC_900402_900402
 
 
  Unknown
 
 
  DSG1-AS1,DSG4,DSG3
 
engchuan_15_ASD_discovery_controls-controlHABC_902827_902827
 
 
  Unknown
 
 
  DSG1-AS1,DSG4,DSG3
 
krumm_15_ASD_discovery_controls-control11573.s1
  Illumina 1MDuo
 
  Maternal
 
 
  DSG1-AS1,DSG4,DSG3
 
krumm_15_ASD_discovery_controls-control13311.s1
  1M-Duov3
 
  Maternal
 
 
  DSC3
 
poultney_13_ASD_discovery_controls-control04C27734A
 
 
  Unknown
 
 
  CCDC178
 
sanders_11_ASD_discovery_controls-11135.s1
 
 
  Maternal
  Simplex (quad)
  NA
  GAREM1
 
sanders_11_ASD_discovery_controls-11256.s1
 
 
  Paternal
  Simplex (quad)
  NA
 
 
sanders_11_ASD_discovery_controls-11573.s1
 
 
  Maternal
  Simplex (quad)
  NA
  DSG1-AS1,DSG4,DSG3
 
sanders_11_ASD_discovery_controls-11917.s1
 
 
  Unknown
  Simplex (quad)
  NA
  GAREM1
 
sanders_11_ASD_discovery_controls-11918.s1
 
 
  Paternal
  Simplex (quad)
  NA
 
 
sanders_11_ASD_discovery_controls-12154.s1
 
 
  Maternal
  Simplex (quad)
  NA
 
 
sanders_11_ASD_discovery_controls-12252.s1
 
 
  Unknown
  Simplex (quad)
  NA
  CCDC178
 
sanders_11_ASD_discovery_controls-12512.s1
 
 
  Maternal
  Simplex (quad)
  NA
 
 
sanders_11_ASD_discovery_controls-12582.s1
 
 
  Unknown
  Simplex (quad)
  NA
  GAREM1
 
sanders_11_ASD_discovery_controls-12810.s1
 
 
  Unknown
  Simplex (quad)
  NA
  GAREM1
 
sanders_11_ASD_discovery_controls-13083.s1
 
 
  Paternal
  Simplex (quad)
  NA
  RNU6-1050P,TRAPPC8
 
sanders_11_ASD_discovery_controls-13195.s1
 
 
  Paternal
  Simplex (quad)
  NA
 
 
sanders_11_ASD_discovery_controls-13233.s1
 
 
  Unknown
  Simplex (quad)
  NA
  CCDC178
 

No Animal Model Data Available
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