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18q11.2CNV Type: Deletion-Duplication


Largest CNV size: 60788 bp

Statistics Box:
Number of Reports: 13



Summary Information

Summary statement in development

Additional Locus Information

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USCS Symbol             NCBI Symbol

Decipher

            Decipher Symbol

References

Major Reports

Title
Author, Year
Report Class
CNV Type
An evidence-based approach to establish the functional and clinical significance of copy number variants in intellectual and developmental disabili...
Duplication
Excess of rare, inherited truncating mutations in autism.
Duplication

Minor Reports

Title
Author, Year
Report Class
CNV Type
Reduced transcript expression of genes affected by inherited and de novo CNVs in autism.
Duplication
Multiple recurrent de novo CNVs, including duplications of the 7q11.23 Williams syndrome region, are strongly associated with autism.
Deletion-Duplication
Transmission disequilibrium of small CNVs in simplex autism.
Duplication
Identification of small exonic CNV from whole-exome sequence data and application to autism spectrum disorder.
Duplication
Performance of case-control rare copy number variation annotation in classification of autism.
Deletion
Whole genome sequencing resource identifies 18 new candidate genes for autism spectrum disorder
Deletion-Duplication
NA
Deletion
NA
Deletion-Duplication
Paternally inherited cis-regulatory structural variants are associated with autism.
Deletion
NA
Deletion
NA
Deletion

Cases

Cohort ID
Author, Year
Descripton
Cohort Size
Diagnosis
Age
Gender
CNV Size
Deletion
Duplication
Total CNV's
 brandler_18_ASD_replication_cases
 Affected individuals from MSSNG cohort (1395 cases from 1187 families) and the Simons Simplex 2 (SSC2) cohort (584 cases from simplex quad families)
 1979
 Cases diagnosed with ASD
 N/A
 N/A
 21859
 1
 0
 1
 costa_21_ASD_discovery_cases
  NA NA
 ASD probands referred to the Centro de Estudos sobre o Genoma Humano e Celulas-tronco (CEGH-CEL, Instituto de Biociencias (IB), Universidade de Sao Paulo, USP) between 2009 and 2018.
 144
 Cases diagnosed with ASD by psychiatrists or neurologists based on the Diagnostic and Statistical Manual of Mental Disorders (DSM)-IV or DSM-5.
 Range, 1-34 yrs. (mean, 7.7 yrs.)
 77.08% Male
 38063
 1
 0
 1
 engchuan_15_ASD_discovery_cases
 Samples from the Autism Genome Project (AGP)
 1892
 Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
 N/A
 85.78% Male
 85152
 1
 0
 1
 han_22_ASD/DD/ID_discovery_cases
  NA NA
 Probands with ASD or unexplained developmental delay/intellectual disability with or without other congenital anomalies from Shandong province in Northern China who were referred for genetic services from January 2014 to December 2018.
 410
 151 cases diagnosed with ASD (DSM-5 criteria, ADOS-2, confirmed by CARS score > 30) and 259 patients diagnosed with developmental delay/intellectual disability (DSM-5 criteria, confirmed by Gesell developmental scale DQ score < 75 and Wechsler Intelligence Scale for Children-Revised with IQ<70).
 Mean age, 2 yrs. 11 mos.
 68.78% Male
 122374
 1
 0
 1
 kaminsky_11_DD/ID/ASD_discovery_cases
 Cases from the International Standards for Cytogenomic Arrays (ISCA) consortium
 15749
 Unexplained developmental delay, intellectual disability, dysmorphic features, multiple congenital anomalies, autism spectrum disorders, or clinical features suggestive of a chromosomal syndrome
 NA
 NA
 2216130
 0
 1
 1
 krumm_13_ASD_discovery_cases
 Probands from quad families ascertained as part of the Simons Simplex Collection (SSC); CNVs detected using data from four previously published exome sequencing studies (O'Roak et al., 2011; Iossifov et al., 2012; O'Roak et al., 2012; Sanders et al., 2012)
 411
 Diagnosis of ASD. Social Responsiveness Scale (SRS) used as a quantitative measure of social deficits
 N/A
 81.265% Male
 192293
 0
 1
 1
 krumm_15_ASD_discovery_cases
 Probands from the Simons Simplex Collection
 2377
 Diagnosis of ASD
 N/A
 N/A
 12220
 0
 1
 1
 larson_17_ASD_discovery_cases
  NA NA
 Participants with a dual diagnosis of ASD and psychosis that were recruited from clinical services in the public and independent sectors in the United Kingdom, as well as from charities and an Asperger's syndrome social networking website (study took place from January 2011 and April 2014)
 116
 All cases with a dual diagnosis of ASD and psychosis (affective, schizophrenic, and atypical)
 N/A
 N/A
 41426
 1
 0
 1
 maini_18_ASD/DD/ID_discovery_cases
  NA NA
 Patients evaluated at the Clinical Genetics Unit of Arcispedale Santa Maria Nuova, AUSL-IRCCS of Reggio Emilia that were investigated through aCGH between 2005 and 2016
 293
 Cases presented with one or more neurodevelopmental disorders (NDD), multiple congenital anomalies (MCA), and/or dysmorphic features. Most frequent neurodevelopmental diagnoses include language delay (78.5%), intellectual disability (66.4%), motor delay (50.7%), and ASD (13.9%); dysmorphic features were also frequently observed (52.7%)
 Mean age, 7 yrs. (range, 1 mo.-29 yrs.)
 57.5% Male
 932000
 1
 1
 2
 nord_11_ASD_discovery_cases
 Youth with ASD (as part of mother-father-child trios)
 41
 ASD
 
 85.4% Male
 95576
 0
 1
 1
 poultney_13_ASD_discovery_cases
 ASD cases of European ancestry from AGRE retained after filtering (original cohort size of 432 cases)
 299
 Cases diagnosed with ASD
 N/A
 79.86% Male (before filtering)
 48081
 0
 1
 1
 sanders_11_ASD_discovery_cases
 Autistic probands from the Simons Simplex Collection (SSC). 872 probands in quartet families, 272 probands in trios.
 1124
 ASD diagnosis: 89.5% autism; 8.5% PDD-NOS, 2% Asperger syndrome. Mean full-scale IQ 85.1 1.5 (mean verbal IQ, 81.9 1.7; mean non-verbal IQ, 88.4 1.4)
 Mean, 9.1 yrs.
 86.1% Male
 60788
 7
 3
 10
 yuen_17_ASD_discovery_cases
 ASD genomes (1745 ASD probands, 879 ASD-affected siblings, 1 ASD-affected father, and 1 ASD-affected grandfather) from AGRE (n=730), the AGRE; Autism Treatment Network cohort (n=192) ,the ASD: Genomes to Outcomes Study cohort (n=1421), the Baby Siblings Research Consortium (n=43), the Baby Siblings Research Consortium; The Autism Simplex Collection cohort (n=6), the Infant Sibling Study (n=62), th
 2626
 ASD diagnosis of research quality when meeting criteria on one (n=437) or both (n=1361) of the diagnostic measures ADI-R and ADOS; clinical diagnosis of ASD (n=819) when given by expert clinician according to DSM-IV or DSM-5
 N/A
 78.71% Male
 465499
 1
 1
 2

Controls

Cohort ID
Author, Year
Descripton
Cohort Size
Diagnosis
Age
Gender
CNV Size
Deletion
Duplication
Total CNV's
 engchuan_15_ASD_discovery_controls
 Platform-matched controls from three large studies: SAGE (Study of Addiction Genetics and Environment), Ontario Colorectal Cancer study, and HABC (Health Aging and Body Composition)
 2342
 Controls; subjects had no previous psychiatric history
 N/A
 46.67% Male
 220366
 1
 1
 2
 kaminsky_11_DD/ID/ASD_discovery_controls
 Controls from the International Standards for Cytogenomic Arrays (ISCA) consortium
 10118
 Controls
 NA
 NA
 NA
 NA
 NA
 NA
 krumm_13_ASD_discovery_controls
 Unaffected siblings of ASD probands from quad families ascertained as part of the Simons Simplex Collection (SSC); CNVs detected using data from four previously published exome sequencing studies (O'Roak et al., 2011; Iossifov et al., 2012; O'Roak et al., 2012; Sanders et al., 2012)
 411
 Control (unaffected siblings of ASD probands). Social Responsiveness Scale (SRS) used as a quantitative measure of social deficits
 N/A
 46.47% Male
 2419
 0
 1
 1
 krumm_15_ASD_discovery_controls
 Unaffected siblings from quad families from the Simons Simplex Collection
 1786
 Control
 N/A
 N/A
 0
 0
 0
 0
 larson_17_ASD_discovery_controls
  NA NA
 Entries listed in the Database of Genomic Variants (up to October 2017)
 N/A
 Control
 N/A
 N/A
 41426
 0
 0
 0
 nord_11_ASD_discovery_controls
 Samples from 367 total control individuals (319 European American, 48 African American) used to test for differences in rare CNV prevalence compared with autism cases
 123
 Controls (no history of psychiatric symptoms by self-report)
 30 yrs.
 
 0
 0
 0
 0
 poultney_13_ASD_discovery_controls
 Controls matched for European ancestry from NIMH and CEPH retained after filtering (original cohort size of 379 controls)
 260
 Control
 N/A
 47.49% Male (before filtering)
 109043
 0
 2
 2
 sanders_11_ASD_discovery_controls
 Matched siblings of autistic probands from the Simons Simplex Collection (SSC).
 872
 Controls
 Mean, 10.0 yrs.
 
 39419
 6
 0
 6

Cases

Cohort ID
Geographical Ancestry
Discovery Method
Platform
Algorithm
Software
Validation Method
 brandler_18_ASD_replication_cases
  N/A
 WGS
  Illumina HiSeq X10
 ForestSV, Lumpy, Manta, Mobster, SV2
 
 None
 costa_21_ASD_discovery_cases
  Brazil
 aCGH
  Agilent 180K
 NA
 Agilent Genomic Workbench
 None
 engchuan_15_ASD_discovery_cases
  Caucasian
 Solid phase hybridization
  Illumina 1M
 
 
 None
 han_22_ASD/DD/ID_discovery_cases
  Han Chinese
 Array SNP
  Affymetrix SNP 6.0, Affymetrix CytoScan HD
 
 
 
 kaminsky_11_DD/ID/ASD_discovery_cases
  NA
 aCGH
  Agilent 44K, Agilent 105K
 
 Feature Extraction, DNA Analytics
 FISH, qPCR, MLPA, aCGH, standard G-banded chromosome analysis
 krumm_13_ASD_discovery_cases
  N/A
 WES
  Whole exome sequencing platforms used in four recent publications (O'Roak et al., 2011; Sanders et al., 2012; O'Roak et al., 2012, and Iossifov et al., 2012)
 DNACopy, CGHCall
 CoNIFER
 None
 krumm_15_ASD_discovery_cases
  N/A
 WES
 
 CoNIFER, XHMM
 
 Solid phase hybridization (Illumina 1M, 1 M Duo, or Omni 2.5)
 larson_17_ASD_discovery_cases
  United Kingdom
 Array SNP
  Affymetrix CytoScan HD 2.8M, Affymetrix Cytogenetics
 SNP-FASST2 Segmentation
 Nexus Copy Number 7 (BioDiscovery), Affymetrix ChAS
 None
 maini_18_ASD/DD/ID_discovery_cases
  Italian
 aCGH, array SNP
  Multiple platforms, including Agilent and Affymetrix arrays (8x60K oligochips since 2012)
 
 
 None
 nord_11_ASD_discovery_cases
  29 European American, 3 Asian American, 2 Hispanic, 2 African American, 5 unknown ancestry
 aCGH
  NimbleGen HD2
 Sliding-window algorithm, ~10 kb minumum size threshold
 
 None
 poultney_13_ASD_discovery_cases
  European
 WES
  Agilent SureSelect Human All Exon v.2
 XHMM
 
 None
 sanders_11_ASD_discovery_cases
  White non-Hispanic, 74.5%; mixed, 9.3%, Asian, 4.3%, White Hispanic, 4.0%, African-American, 3.8%; other, 4.2&
 Solid phase hybridization
  Illumina 1M v1, Illumina 1M v3
 PennCNV, QuantiSNP, GNOSIS
 
 
 yuen_17_ASD_discovery_cases
  N/A
 WGS
  Complete Genomics, Illumina HiSeq 2000, HiSeq X
 
 
 None (CNV validation not available, CNV not detected by validation method, or CNV not detected by WGS but was detected by validation methodology)

Controls

Cohort ID
Geographical Ancestry
Discovery Method
Platform
Algorithm
Software
Validation Method
  engchuan_15_ASD_discovery_controls
  Caucasian
  Solid phase hybridization
  Illumina 1M
 
 
  None
  kaminsky_11_DD/ID/ASD_discovery_controls
  NA
  aCGH
  Agilent 44K, Agilent 105K
 
  Feature Extraction, DNA Analytics
 
  krumm_13_ASD_discovery_controls
  N/A
  WES
  Whole exome sequencing platforms used in four recent publications (O'Roak et al., 2011; Sanders et al., 2012; O'Roak et al., 2012, and Iossifov et al., 2012)
  DNACopy, CGHCall
  CoNIFER
  None
  krumm_15_ASD_discovery_controls
  N/A
  WES
 
  CoNIFER, XHMM
 
  None
  larson_17_ASD_discovery_controls
  N/A
  N/A
  N/A
 
 
 
  nord_11_ASD_discovery_controls
 
  aCGH
  NimbleGen HD2
  Sliding-window algorithm, ~10 kb minumum size threshold
 
  None
  poultney_13_ASD_discovery_controls
  European
  WES
  Agilent SureSelect Human All Exon v.2
  XHMM
 
  None
  sanders_11_ASD_discovery_controls
 
  Solid phase hybridization
  Illumina 1M v1 or Illumina 1M v3
  PennCNV, QuantiSNP, GNOSIS
 
 

Cases

Patient ID
Author, Year
Age
Gender
Primary Diagnosis
Clinical Profile
Cognitive Profile
CNV Start
CNV End
CNV Size
Genome Build
Type Method
Validation
  brandler_18_ASD_replication_cases-case2-1736-003
 N/A
 M
 ASD
 Case from MSSNG cohort
 
 21555746
 21577604
  21859
 GRCh38
 Deletion
 No
  costa_21_ASD_discovery_cases-caseP70
  NA NA
 NA
 F
 ASD
 Case diagnosed with ASD based on DSM-IV or DSM-5 criteria. Additional clinical features: reflux, convulsion, umbilical hernia, allergic rhinitis.
 
 21777881
 21815943
  38063
 GRCh38
 Deletion
 No
  engchuan_15_ASD_discovery_cases-case14214_3450
 N/A
 N/A
 ASD
 Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
 
 24625595
 24710747
  85153
 GRCh38
 Deletion
 No
  han_22_ASD/DD/ID_discovery_cases-caseY46
  NA NA
 4 yrs. 5 mos.
 M
 ASD
 
 
 21701965
 21824338
  122374
 GRCh38
 Deletion
 No
  kaminsky_11_DD/ID/ASD_discovery_cases-ISCA00001902
 NA
 NA
 Developmental delay/intellectual disability/ASD
 Clinical profile NA
 Cognitive profile NA
 24411993
 26628123
  2216131
 GRCh38
 Duplication
 Yes
  krumm_13_ASD_discovery_cases-case12697.p1
 N/A
 M
 ASD
 ASD proband from SSC quad family 12697. SRS score of 80.
 Full-scale IQ (FSIQ) score of 85.
 26856210
 27048503
  192294
 GRCh38
 Duplication
 No (not tested)
  krumm_15_ASD_discovery_cases-case11099.p1
 N/A
 Male
 ASD
 Proband from the Simons Simplex Collection (SSC). Family type: Quad
 
 23617731
 23629951
  12221
 GRCh38
 Duplication
 Yes
  larson_17_ASD_discovery_cases-case24
  NA NA
 N/A
 M
 ASD and psychosis
 Male, above average IQ, psychosis onset late teens, diagnosis of schizoaffective disorder (depressed type), family history of depression and psychosis, but not in FDRs. CNV not reported in DGV.
 Above average IQ
 24007712
 24049138
  41427
 GRCh38
 Deletion
 No
  maini_18_ASD/DD/ID_discovery_cases-case_unknown73
  NA NA
 N/A
 N/A
 NDD/MCA/dysmorphic features
 CNV was identified in an individual with one or more neurodevelopmental disorders (NDD), multiple congenital anomalies (MCA), and/or dysmorphic features (detailed clinical information was not available). CNV classified as pathogenic
 
 21861069
 22793627
  932559
 GRCh38
 Deletion
 No
  maini_18_ASD/DD/ID_discovery_cases-case_unknown74
  NA NA
 N/A
 N/A
 NDD/MCA/dysmorphic features
 CNV was identified in an individual with one or more neurodevelopmental disorders (NDD), multiple congenital anomalies (MCA), and/or dysmorphic features (detailed clinical information was not available). CNV classified as variant of unknown significance-likely benign (VOUS-LB)
 
 23722105
 23821440
  99336
 GRCh38
 Duplication
 No
  nord_11_ASD_discovery_cases-206-1
 
 
 ASD
 
 
 22257582
 22353157
  95576
 Unknown
 Duplication
 No
  poultney_13_ASD_discovery_cases-case99HI1144B
 N/A
 M
 ASD
 ASD case from AGRE (AGRE ID AU020404; NDAR ID NDAR_INVPN168CVH)
 
 23819839
 23867919
  48081
 GRCh38
 Duplication
 No
  sanders_11_ASD_discovery_cases-11099.p1
 11.4
 M
 Autism
 NA
 Full-scale IQ, 83; non-verbal IQ, 89; verbal IQ, 77
 23619089
 23629736
  10648
 GRCh38
 Duplication
 No
  sanders_11_ASD_discovery_cases-11202.p1
 11.8
 M
 Autism
 NA
 Full-scale IQ, 81; non-verbal IQ, 85; verbal IQ 71
 23194133
 23205841
  11709
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-11620.p1
 16.5
 M
 ASD
 NA
 Full-scale IQ, 102; non-verbal IQ, 119; verbal IQ, 110
 24476802
 24480951
  4150
 GRCh38
 Duplication
 No
  sanders_11_ASD_discovery_cases-11740.p1
 11.7
 M
 Autism
 NA
 Full-scale IQ, 98; non-verbal IQ, 89; verbal IQ, 115
 23194133
 23204380
  10248
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-11780.p1
 4.3
 M
 Autism
 NA
 Full-scale IQ, 117; non-verbal IQ, 112; verbal IQ, 120
 27026496
 27072538
  46043
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-12208.p1
 7.4
 M
 Autism
 NA
 Full-scale IQ, 109; non-verbal IQ, 118; verbal IQ, 89
 27094047
 27147783
  53737
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-12454.p1
 5.5
 M
 Autism
 NA
 Full-scale IQ, 72; non-verbal IQ, 82; verbal IQ, 62
 23836194
 23896982
  60789
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-12638.p1
 9.9
 M
 Autism
 NA
 Full-scale IQ, 73; non-verbal IQ, 81; verbal IQ, 63
 26196471
 26211125
  14655
 GRCh38
 Duplication
 No
  sanders_11_ASD_discovery_cases-13083.p1
 7.5
 M
 Autism
 NA
 Full-scale IQ, 52; non-verbal IQ, 67; verbal IQ, 23
 23822334
 23861753
  39420
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-13233.p1
 13.6
 M
 Autism
 NA
 Full-scale IQ, 90; non-verbal IQ, 95; verbal IQ, 84
 22474248
 22486192
  11945
 GRCh38
 Deletion
 No
  yuen_17_ASD_discovery_cases-case7-0068-003
 N/A
 F
 ASD
 Case cohort: ASD: Genomes to Outcome Study. Clinical description: non-verbal learning disorder; 46, XX t(13;17)(q11;p11.1)mat
 
 21767540
 21775039
  7500
 GRCh38
 Deletion
 No
  yuen_17_ASD_discovery_cases-caseAU4030303
 N/A
 N/A
 ASD
 Case cohort: AGRE. Clinical description: N/A
 
 21803040
 22268537
  465498
 GRCh38
 Duplication
 No

Controls

Patient ID
Author, Year
Age
Gender
Primary Diagnosis
Clinical Profile
Cognitive Profile
CNV Start
CNV End
CNV Size
Genome Build
Type Method
Validation
  engchuan_15_ASD_discovery_controls-controlHABC_900515_900515
  N/A
  N/A
  Control
  No previous psychiatric history
 
  27289461
  27509827
  220367
  GRCh38
  Deletion
  No
  engchuan_15_ASD_discovery_controls-controlHABC_902685_902685
  N/A
  N/A
  Control
  No previous psychiatric history
 
  26882647
  26924809
  42163
  GRCh38
  Duplication
  No
  krumm_13_ASD_discovery_controls-control12394.s1
  N/A
  M
  Control
  Unaffected sibling from SSC quad family 12394. SRS score of 36.
 
  23477005
  23479424
  2420
  GRCh38
  Duplication
  No (not tested)
  poultney_13_ASD_discovery_controls-control04C31231A
  N/A
  M
  Control
  NIMH Control (NIMH ID 33455)
 
  22936850
  23026249
  89400
  GRCh38
  Duplication
  No
  poultney_13_ASD_discovery_controls-control05C45254
  N/A
  M
  Control
  NIMH Control (NIMH ID 42966)
 
  24069155
  24178197
  109043
  GRCh38
  Duplication
  No
  sanders_11_ASD_discovery_controls-11167.s1
  7.3
  M
  Control (matched sibling)
  NA
  NA
  23822334
  23861753
  39420
  GRCh38
  Deletion
  No
  sanders_11_ASD_discovery_controls-11740.s1
  9.3
  M
  Control (matched sibling)
  NA
  NA
  23194133
  23204380
  10248
  GRCh38
  Deletion
  No
  sanders_11_ASD_discovery_controls-12582.s1
  9.2
  M
  Control (matched sibling)
  NA
  NA
  23194133
  23205841
  11709
  GRCh38
  Deletion
  No
  sanders_11_ASD_discovery_controls-12610.s1
  8.8
  F
  Control (matched sibling)
  NA
  NA
  23845022
  23861520
  16499
  GRCh38
  Deletion
  No
  sanders_11_ASD_discovery_controls-12788.s1
  11.1
  F
  Control (matched sibling)
  NA
  NA
  23103045
  23127151
  24107
  GRCh38
  Deletion
  No
  sanders_11_ASD_discovery_controls-13226.s1
  10.3
  F
  Control (matched sibling)
  NA
  NA
  23194133
  23205841
  11709
  GRCh38
  Deletion
  No

Cases

Patient ID
Validation Description
Primary Disorder Inheritence
Inheritence
Family Profile
Disease Segregation
Gene Content
Altered Gene Expression
 brandler_18_ASD_replication_cases-case2-1736-003
 No validation step reported
 
 Maternal
 
 
 ESCO1
 
 costa_21_ASD_discovery_cases-caseP70
 
 
 Unknown
 
 
 MIB1,RN7SL233P
 
 engchuan_15_ASD_discovery_cases-case14214_3450
 
 
 Unknown
 
 
 RAC1P1,PPIAP57,LINC01915
 
 han_22_ASD/DD/ID_discovery_cases-caseY46
 
 
 Maternal
 
 
 MIB1,ABHD3,RN7SL233P
 
 kaminsky_11_DD/ID/ASD_discovery_cases-ISCA00001902
 FISH, qPCR, MLPA, aCGH, or standard G-banded chromosome analysis
 
 Unknown
 Unknown
 Unknown
 EIF4A3P1,RAC1P1,PPIAP57,WBP2P1,RN7SL97P,RPS24P18,DHFRP1,NPM1P2,SINHCAFP1,RNU6-1289P,LINC01543,MIR8057,CIAPIN1P,IMPACT,HRH4,LINC01894,PSMA8,LINC01915,SS18,TAF4B,KCTD1,ZNF521
 
 krumm_13_ASD_discovery_cases-case12697.p1
 
 
 Paternal
 Simplex
 Segregated
 AQP4,AQP4-AS1,CHST9
 
 krumm_15_ASD_discovery_cases-case11099.p1
 Illumina 1M
 
 Paternal
 Simplex
 Segregated
 ANKRD29
 
 larson_17_ASD_discovery_cases-case24
 
 
 Unknown
 
 Unknown
 TTC39C-AS1,TTC39C
 
 maini_18_ASD/DD/ID_discovery_cases-case_unknown73
 
 
 Unknown
 Unknown
 Unknown
 RNU6-1038P,RNA5SP451,RNU6ATAC20P,RNU6-702P,CTAGE1,RPS4XP18,RNU6-1032P,GATA6-AS1,GATA6,MIB1,LINC01900
 
 maini_18_ASD/DD/ID_discovery_cases-case_unknown74
 
 
 Maternal
 Unknown
 Unknown
 LAMA3
 
 nord_11_ASD_discovery_cases-206-1
 
 
 Maternal
 
 
 KCTD1
 
 poultney_13_ASD_discovery_cases-case99HI1144B
 
 
 Unknown
 Unknown (likely multiplex/AGRE)
 Unknown
 LAMA3
 
 sanders_11_ASD_discovery_cases-11099.p1
 
 
 Paternal
 Simplex (quad-proband matched)
 Segregated
 ANKRD29
 
 sanders_11_ASD_discovery_cases-11202.p1
 
 
 Both parents
 Simplex (trio)
 NA
 CABLES1,TMEM241
 
 sanders_11_ASD_discovery_cases-11620.p1
 
 
 Maternal
 Simplex (quad-proband matched)
 Segregated
 HRH4
 
 sanders_11_ASD_discovery_cases-11740.p1
 
 
 Unknown
 Simplex (quad-proband matched)
 Not segregated
 CABLES1,TMEM241
 
 sanders_11_ASD_discovery_cases-11780.p1
 
 
 Paternal
 Simplex (trio)
 NA
 AQP4-AS1,CHST9
 
 sanders_11_ASD_discovery_cases-12208.p1
 
 
 Maternal
 Simplex (trio)
 NA
 AQP4-AS1,CHST9
 
 sanders_11_ASD_discovery_cases-12454.p1
 
 
 Paternal
 Simplex (trio)
 NA
 LAMA3
 
 sanders_11_ASD_discovery_cases-12638.p1
 
 
 Maternal
 Simplex (quad-proband matched)
 Not segregated
 NPM1P2
 
 sanders_11_ASD_discovery_cases-13083.p1
 
 
 Unknown
 Simplex (quad-proband matched)
 Not segregated
 LAMA3
 
 sanders_11_ASD_discovery_cases-13233.p1
 
 
 Maternal
 Simplex (quad-proband matched)
 Not segregated
 
 
 yuen_17_ASD_discovery_cases-case7-0068-003
 Not detected
 
 Paternal
 Simplex
 Unknown
 MIB1
 
 yuen_17_ASD_discovery_cases-caseAU4030303
 Not available
 
 Unknown
 Simplex
 Unknown
 MIR133A1HG,MIR133A1,MIR1-2,RNU6-1038P,RNA5SP451,RNU6ATAC20P,RNU6-702P,GATA6-AS1,GATA6,MIB1,LINC01900
 

Controls

Patient ID
Validation Description
Primary Disorder Inheritence
Inheritence
Family Profile
Disease Segregation
Gene Content
Altered Gene Expression
engchuan_15_ASD_discovery_controls-controlHABC_900515_900515
 
 
  Unknown
 
 
  UBA52P9,RBM22P1,PA2G4P3
 
engchuan_15_ASD_discovery_controls-controlHABC_902685_902685
 
 
  Unknown
 
 
  AQP4-AS1,CHST9
 
krumm_13_ASD_discovery_controls-control12394.s1
 
 
  Paternal
  Simplex
 
  RIOK3
 
poultney_13_ASD_discovery_controls-control04C31231A
 
 
  Unknown
 
 
  RN7SL745P,RBBP8
 
poultney_13_ASD_discovery_controls-control05C45254
 
 
  Unknown
 
 
  RNU5A-6P,RNA5SP452,CABYR,OSBPL1A,TTC39C
 
sanders_11_ASD_discovery_controls-11167.s1
 
 
  Unknown
  Simplex (quad)
  NA
  LAMA3
 
sanders_11_ASD_discovery_controls-11740.s1
 
 
  Unknown
  Simplex (quad)
  NA
  CABLES1,TMEM241
 
sanders_11_ASD_discovery_controls-12582.s1
 
 
  Unknown
  Simplex (quad)
  NA
  CABLES1,TMEM241
 
sanders_11_ASD_discovery_controls-12610.s1
 
 
  Maternal
  Simplex (quad)
  NA
  LAMA3
 
sanders_11_ASD_discovery_controls-12788.s1
 
 
  Paternal
  Simplex (quad)
  NA
 
 
sanders_11_ASD_discovery_controls-13226.s1
 
 
  Unknown
  Simplex (quad)
  NA
  CABLES1,TMEM241
 

No Animal Model Data Available
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