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16q21CNV Type: Deletion-Duplication


Largest CNV size: 1820000 bp

Statistics Box:
Number of Reports: 19



Summary Information

Summary statement in development

Additional Locus Information

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References

Major Reports

Title
Author, Year
Report Class
CNV Type
Mapping autism risk loci using genetic linkage and chromosomal rearrangements.
Deletion
Structural variation of chromosomes in autism spectrum disorder.
Deletion
Functional impact of global rare copy number variation in autism spectrum disorders.
Deletion
Rare familial 16q21 microdeletions under a linkage peak implicate cadherin 8 (CDH8) in susceptibility to autism and learning disability.
Deletion
Confirmation of chromosomal microarray as a first-tier clinical diagnostic test for individuals with developmental delay, intellectual disability, ...
Duplication
Identification of candidate intergenic risk loci in autism spectrum disorder.
Deletion
Association of CDH11 with non-syndromic ASD.
Deletion
Paternally inherited cis-regulatory structural variants are associated with autism.
Deletion
Cross-Disorder Analysis of Genic and Regulatory Copy Number Variations in Bipolar Disorder
Deletion

Minor Reports

Title
Author, Year
Report Class
CNV Type
Rare structural variation of synapse and neurotransmission genes in autism.
Deletion
Multiple recurrent de novo CNVs, including duplications of the 7q11.23 Williams syndrome region, are strongly associated with autism.
Deletion-Duplication
Molecular karyotyping by array CGH in a Russian cohort of children with intellectual disability, autism, epilepsy and congenital anomalies.
Duplication
A discovery resource of rare copy number variations in individuals with autism spectrum disorder.
Deletion-Duplication
Transmission disequilibrium of small CNVs in simplex autism.
Deletion
Neurodevelopmental and neurobehavioral characteristics in males and females with CDKL5 duplications.
Deletion
Performance of case-control rare copy number variation annotation in classification of autism.
Deletion-Duplication
De Novo Variants in CNOT1, a Central Component of the CCR4-NOT Complex Involved in Gene Expression and RNA and Protein Stability, Cause Neurodevelopmental Delay
Deletion
NA
Deletion
Unveiling genetic insights: Array-CGH and WES discoveries in a cohort of 122 children with essential autism spectrum disorder
Deletion

Cases

Cohort ID
Author, Year
Descripton
Cohort Size
Diagnosis
Age
Gender
CNV Size
Deletion
Duplication
Total CNV's
 battaglia_13_DD/ID/ASD_discovery_cases
 Patients affected by DD/ID/ASD/dysmorphic features of unknown origin observed at the Stella Maris Institute (Pisa, Italy) between May 2004 & December 2011
 349
 34 cases with borderline intellectual disability, 237 cases with mixed intellectual disability, 78 cases with intellectual disability and ASD (cases referred with a provisional diagnosis of ASD evaluated with ADI-R and ADOS-G)
 Range, 5 mos.-19 yrs.
 63.9% Male
 102000
 0
 1
 1
 brandler_18_ASD_discovery_cases
 Affected individuals from the Relating Genes with Adolescent and Child Health (REACH) cohort (362 cases from 311 families; 54 multiplex, 243 simplex) and the Simons Simplex 1 (SSC1) cohort (518 cases from simplex quad families)
 880
 REACH cohort: 285 cases diagnosed with ASD, 43 cases diagnosed with PDD-NOS, 10 cases diagnosed with ADHD, and 24 cases presenting with speech delay, epilepsy, anxiety, or other related developmental disorders that were classified as cases for bioinformatics analyses; Simons Simplex Collection 1 (SSC1) cohort: all 518 cases were diagnosed with ASD
 N/A
 N/A
 647750
 2
 0
 2
 costa_21_ASD_discovery_cases
  NA NA
 ASD probands referred to the Centro de Estudos sobre o Genoma Humano e Celulas-tronco (CEGH-CEL, Instituto de Biociencias (IB), Universidade de Sao Paulo, USP) between 2009 and 2018.
 144
 Cases diagnosed with ASD by psychiatrists or neurologists based on the Diagnostic and Statistical Manual of Mental Disorders (DSM)-IV or DSM-5.
 Range, 1-34 yrs. (mean, 7.7 yrs.)
 77.08% Male
 3299029
 1
 0
 1
 crepel_14_ASD/ID/ADHD_discovery_cases
 Second child of unrelated healthy parents with a de novo complex chromosomal rearrangement [46, XY, t(3;16;5)(q29;q22;q15)inv4(p14;q21)ins(4;5)(q21;q14.3q15)]
 1
 Diagnosis of ASD (ADI-R), intellectual disability (WISC-III total IQ score of 52), and ADHD
 8 yrs.
 Male
 505100
 1
 0
 1
 engchuan_15_ASD_discovery_cases
 Samples from the Autism Genome Project (AGP)
 1892
 Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
 N/A
 85.78% Male
 1641819
 7
 1
 8
 gai_11_ASD_replication_cases
 Replication case samples derived from AGRE sets 1-3
 593
 Idiopathic autism; cases designated as 'spectrum' and 'not quite autism' excluded, as were cases with known genetic syndromes or other non-idiopathic causes
 
 
 108966
 1
 0
 1
 granata_25_ASD_discovery_cases
 "Patients recruited from the Child Neuropsychiatry Unit and the Cytogenetics and Medical Genetics Unit of ""ASST Sette Laghi"", Varese, Italy."
 122
 Cases diagnosed with ASD based on DSM-5 criteria and presented without epilepsy, dysmorphic features, intellectual disability, microcephaly, six or more minor anomalies, or systemic congenital malformations.
 Range, 3-12 yrs.
 85.25% Male
 3490918
 1
 0
 1
 iourov_12_ASD/ID/EP_discovery_cases
 Individuals selected from a total of 2426 patients whom had been evaluated cytogenetically and molecularly between November 2007 and May 2012
 54
 Intellectual disability (ID), autism/ASD, epilepsy (EP), and/or congenital anomalies
 Range, 3 mos.-11 yrs.
 NA
 208219
 0
 1
 1
 krumm_13_ASD_discovery_cases
 Probands from quad families ascertained as part of the Simons Simplex Collection (SSC); CNVs detected using data from four previously published exome sequencing studies (O'Roak et al., 2011; Iossifov et al., 2012; O'Roak et al., 2012; Sanders et al., 2012)
 411
 Diagnosis of ASD. Social Responsiveness Scale (SRS) used as a quantitative measure of social deficits
 N/A
 81.265% Male
 8442
 1
 0
 1
 kushima_22_SCZ_discovery_cases
 Japanese schizophrenia probands evaluated for copy number variation from an initial cohort of 3,111 probands before quality control.
 3014
 Cases diagnosed with schizophrenia (SCZ) according to DSM-5 criteria.
 Median age, 45 yrs.
 53.5% Male
 837874
 1
 0
 1
 marshall_08_ASD_discovery_cases
 Cohort of ASD families (237 simplex, 189 mulitplex) recruited from the Hospital for Sick Children, McMaster Univ., Memorial Univ., and other sites
 427
 ASD
 
 
 37122
 1
 0
 1
 pagnamenta_10b_ASD_discovery_cases_1
 Autistic proband from IMGSAC family 3099. Proband was included in Pinto et al., 2010 CNV study.
 1
 Autism (ADI-R & ADOS)
 
 Male
 1640000
 1
 0
 1
 pagnamenta_10b_ASD_discovery_cases_2
 Autistic brothers of proband (case3099-008) from Pinto et al. CNV study.
 2
 Autism (ADI-R & ADOS)
 
 Male
 1640000
 2
 0
 2
 pagnamenta_10b_LD_discovery_cases
 Heterogeneous cohort of children of Italian descent diagnosed with generalized learning disabilities (LD)
 80
 Learning disability (LD). Subjects negative for karyotype & telomere-FISH abnormalities, negative for fragile X.
 
 Male
 1820000
 1
 0
 1
 pinto_10_ASD_discovery_cases
 Autism Genome Project (AGP) consortium patient cohort from families with at least two ASD individuals
 996
 ASD (ADI-R and ADOS): strict, broad, or spectrum ASD
 
 
 1640000
 2
 0
 2
 prasad_12_ASD_discovery_cases
 Unrelated ASD cases recruited from three Canadian sites (Hospital for Sick Children, McMaster University, and Memorial University of Newfoundland); the majority of cases had been previously genotyped with results published in Marshall et al., 2008 and Pinto et al., 2010. 20 cases from initial cohort of 696 were excluded from further analysis (due to CNVs > 5 Mb).
 676
 Diagnosis of ASD based on meeting criteria on ADI-R and/or ADOS
 NA
 82.84% Male
 103966
 4
 1
 5
 sanders_11_ASD_discovery_cases
 Autistic probands from the Simons Simplex Collection (SSC). 872 probands in quartet families, 272 probands in trios.
 1124
 ASD diagnosis: 89.5% autism; 8.5% PDD-NOS, 2% Asperger syndrome. Mean full-scale IQ 85.1 1.5 (mean verbal IQ, 81.9 1.7; mean non-verbal IQ, 88.4 1.4)
 Mean, 9.1 yrs.
 86.1% Male
 266176
 18
 3
 21
 szafranski_14_ASD/ADHD/DD/ID/OCD_discovery_cases
 Patients screened by chromosomal microrarray analysis (CMA) for Xp22.13 duplications involving the CDKL5 gene
 27000
 Cases with Xp22.13/CDKL5 duplications diagnosed with one or more of the following: ASD, ADHD, developmental delay (DD), intellectual disability (ID), OCD, sensory integration disorder
 N/A
 N/A
 565000
 1
 0
 1
 szatmari_07_ASD_discovery_cases
 ASD patients from 173 families with at least two affected individuals from AGP
 196
 Patients diagnosed with ASD based on ADI-R and ADOS
 
 
 1439900
 3
 0
 3
 vissers_20_ASD/DD/ID_discovery_cases
 Individual with a heterozygous CNOT1 deletion from an initial cohort of 39 individuals with CNOT1 variants recruited through international collaborations, facilitated by MatchMaker Exchange
 1
 Case presented with developmental delay, moderate intellectual disability, and epilepsy
 22 yrs.
 Male
 5196
 1
 0
 1
 walker_13_ASD_discovery_cases
 Unrelated ASD probands previously described in Lionel et al., 2011 and Pinto et al., 2010 CNV reports
 1491
 Diagnosis of ASD based on gold-standard instruments including ADI and ADOS.
 N/A
 N/A
 137549
 2
 0
 2

Controls

Cohort ID
Author, Year
Descripton
Cohort Size
Diagnosis
Age
Gender
CNV Size
Deletion
Duplication
Total CNV's
 engchuan_15_ASD_discovery_controls
 Platform-matched controls from three large studies: SAGE (Study of Addiction Genetics and Environment), Ontario Colorectal Cancer study, and HABC (Health Aging and Body Composition)
 2342
 Controls; subjects had no previous psychiatric history
 N/A
 46.67% Male
 337166
 8
 3
 11
 krumm_13_ASD_discovery_controls
 Unaffected siblings of ASD probands from quad families ascertained as part of the Simons Simplex Collection (SSC); CNVs detected using data from four previously published exome sequencing studies (O'Roak et al., 2011; Iossifov et al., 2012; O'Roak et al., 2012; Sanders et al., 2012)
 411
 Control (unaffected siblings of ASD probands). Social Responsiveness Scale (SRS) used as a quantitative measure of social deficits
 N/A
 46.47% Male
 8442
 1
 0
 1
 krumm_15_ASD_discovery_controls
 Unaffected siblings from quad families from the Simons Simplex Collection
 1786
 Control
 N/A
 N/A
 2186
 1
 0
 1
 kushima_22_ASD/BPD/SCZ_discovery_controls
 Psychiatrically normal control individuals selected from the general population evaluated for copy number variation from an initial cohort of 2,713 control individuals before quality control.
 2671
 Controls were psychiatrically normal and had no history of mental disorders based on responses to questionnaires or self-reporting.
 Median age, 36 yrs.
 47.8% Male
 0
 0
 0
 0
 marshall_08_ASD_discovery_controls_1
 German PopGen project and entries from Database of Genomic Variants
 500
 Controls
 
 
 0
 0
 0
 0
 marshall_08_ASD_discovery_controls_2
 Non-disease controls from Ontario population
 1152
 Controls
 
 
 0
 0
 0
 0
 nord_11_ASD_discovery_controls
 Samples from 367 total control individuals (319 European American, 48 African American) used to test for differences in rare CNV prevalence compared with autism cases
 123
 Controls (no history of psychiatric symptoms by self-report)
 30 yrs.
 
 73913
 1
 0
 1
 pagnamenta_10b_ASD/LD_discovery_controls
 Control subjects: 2416 from Popgen study, controls from Ontario Ottawa Heart Control study, or Hapmap controls; 1287 from SAGE control project; 1320 from CHOP pediatric control study
 5023
 Controls
 
 
 1820000
 0
 0
 0
 prasad_12_ASD_discovery_controls
 PDx controls [1000 DNA samples from reportedly healthy donors (50.2% male) from BioServe (Beltsville, MD)] and 4139 in-house controls previously reported in Krawcak et al. 2006, Stewart et al. 2009, and Bierut et al. 2010. CNVs identified in controls were used to define rare ASD-specific CNVs.
 5139
 Control
 NA
 NA (PDx controls 50.2% male)
 103966
 0
 0
 0
 sanders_11_ASD_discovery_controls
 Matched siblings of autistic probands from the Simons Simplex Collection (SSC).
 872
 Controls
 Mean, 10.0 yrs.
 
 115470
 16
 1
 17
 walker_13_ASD_discovery_controls
 Control samples from the SAGE cohort (n=1287), from the Ottawa Heart Institute (n=1234), and from the POPGEN collection (n=1123)
 3644
 Control
 N/A
 N/A
 137549
 0
 0
 0

Cases

Cohort ID
Geographical Ancestry
Discovery Method
Platform
Algorithm
Software
Validation Method
 battaglia_13_DD/ID/ASD_discovery_cases
  Italy
 aCGH, array SNP
  BACs aCGH, Agilent 44K, Agilent 180K, Affymetrix 6.0
 
 
 FISH, qPCR
 brandler_18_ASD_discovery_cases
  N/A
 WGS
  Illumina HiSeq X10 or HiSeq 2500
 ForestSV, Lumpy, Manta, Mobster, SV2
 
 PCR, array SNP
 costa_21_ASD_discovery_cases
  Brazil
 aCGH
  Agilent 180K
 NA
 Agilent Genomic Workbench
 None
 crepel_14_ASD/ID/ADHD_discovery_cases
  Belgium
 aCGH
  180k CytoSure ISCA v2
 
 
 qPCR
 engchuan_15_ASD_discovery_cases
  Caucasian
 Solid phase hybridization
  Illumina 1M
 
 
 None
 gai_11_ASD_replication_cases
  European
 Solid phase hybridization
  Illumina Infinium II HumanHap550 BeadChip
 
 BeadStudio 3.0
 None
 granata_25_ASD_discovery_cases
  Italy
 aCGH
  CytoSure ISCA V3 4x180K
 
 CytoSure Interpret (OGT)
 
 iourov_12_ASD/ID/EP_discovery_cases
  Russian
 aCGH
  BACs aCGH
 
 
 None
 krumm_13_ASD_discovery_cases
  N/A
 WES
  Whole exome sequencing platforms used in four recent publications (O'Roak et al., 2011; Sanders et al., 2012; O'Roak et al., 2012, and Iossifov et al., 2012)
 DNACopy, CGHCall
 CoNIFER
 None
 kushima_22_SCZ_discovery_cases
  Japan
 aCGH
  NimbleGen 720K Whole-Genome Tiling, Agilent SurePrint G3 Human CGH 400K
 Fast Adaptive States Segmentation Technique 2
 BioDiscovery Nexus Copy Number v.9.0
 qRT-PCR
 marshall_08_ASD_discovery_cases
  90% European, 4.5% European-mixed, 4.5% Asian, 0.07% African
 Array SNP, karotyping
  Affymetrix 500K
 dChip, CNAG, GEMCA
 
 qPCR, qmPCR
 pagnamenta_10b_ASD_discovery_cases_1
  European
 Solid phase hybridization
  Illumina 1M
 
 
 Long range PCR, Sanger sequencing
 pagnamenta_10b_ASD_discovery_cases_2
  European
 Solid phase hybridization
  Illumina 1M
 
 
 Long range PCR, Sanger sequencing
 pagnamenta_10b_LD_discovery_cases
  Italian
 aCGH
  Agilent 44K
 
 
 aCGH, qPCR, long range PCR
 pinto_10_ASD_discovery_cases
  European
 Solid phase hybridization
  Illumina Infinium 1M SNP microarray
 QuantiSNP, iPattern
 
 qPCR, long-range PCR (LR-PCR), MLPA, FISH, aCGH (Agilent 1M), array SNP (Affymetrix 500K)
 prasad_12_ASD_discovery_cases
  Canada
 aCGH
  Agilent 1M
 ADM-2, DNAcopy (R Bioconductor)
 DNA Analytics v4.0.85 (Agilent), DNAcopy
 None
 sanders_11_ASD_discovery_cases
  White non-Hispanic, 74.5%; mixed, 9.3%, Asian, 4.3%, White Hispanic, 4.0%, African-American, 3.8%; other, 4.2&
 Solid phase hybridization
  Illumina 1M v1, Illumina 1M v3
 PennCNV, QuantiSNP, GNOSIS
 
 
 szafranski_14_ASD/ADHD/DD/ID/OCD_discovery_cases
  N/A
 aCGH
  V8.0 OLIGO, V8.1.1 OLIGO, V8.2 OLIGO HR+SNP, V8.3 OLIGO HR+SNP, 180K, V9.1.1 OLIGO HR+SNP, 400K (Medical Genetics Laboratories at Baylor College of Medicine/Agilent)
 
 
 None
 szatmari_07_ASD_discovery_cases
 
 Array SNP
  Affymetrix 10K (v2)
 HMM
 dChip
 Karyotyping, qPCR, aCGH, array SNP, overlap with Mendelian genotype errors
 vissers_20_ASD/DD/ID_discovery_cases
 
 N/A
  N/A
 
 
 None
 walker_13_ASD_discovery_cases
  N/A
 Array SNP, solid phase hybridization
  Illumina 1M, Affymetrix 6.0
 
 QuantiSNP, PennCNV, Birdsuite, iPattern, Affymetrix Genotyping Console
 Long-range PCR, qPCR

Controls

Cohort ID
Geographical Ancestry
Discovery Method
Platform
Algorithm
Software
Validation Method
  engchuan_15_ASD_discovery_controls
  Caucasian
  Solid phase hybridization
  Illumina 1M
 
 
  None
  krumm_13_ASD_discovery_controls
  N/A
  WES
  Whole exome sequencing platforms used in four recent publications (O'Roak et al., 2011; Sanders et al., 2012; O'Roak et al., 2012, and Iossifov et al., 2012)
  DNACopy, CGHCall
  CoNIFER
  None
  krumm_15_ASD_discovery_controls
  N/A
  WES
 
  CoNIFER, XHMM
 
  Solid phase hybridization (Illumina 1M, 1 M Duo, or Omni 2.5)
  kushima_22_ASD/BPD/SCZ_discovery_controls
  Japan
  aCGH
  NimbleGen 720K Whole-Genome Tiling, Agilent SurePrint G3 Human CGH 400K
  Fast Adaptive States Segmentation Technique 2
  BioDiscovery Nexus Copy Number v.9.0
  qRT-PCR
  marshall_08_ASD_discovery_controls_1
  European
  Array SNP, karotyping
  Affymetrix 500K
  dChip, CNAG, GEMCA
 
 
  marshall_08_ASD_discovery_controls_2
  European
  Array SNP, karotyping
  Affymetrix 500K
  dChip, CNAG, GEMCA
 
 
  nord_11_ASD_discovery_controls
 
  aCGH
  NimbleGen HD2
  Sliding-window algorithm, ~10 kb minumum size threshold
 
  None
  pagnamenta_10b_ASD/LD_discovery_controls
  European
  Array SNP, solid phase hybridization
  Affymetrix 6.0, Illumina 1M, Illumina 550K
 
 
 
  prasad_12_ASD_discovery_controls
  NA
  aCGH
  Agilent 1M
  ADM-2, DNAcopy (R Bioconductor)
  DNA Analytics v4.0.85 (Agilent), DNAcopy
 
  sanders_11_ASD_discovery_controls
 
  Solid phase hybridization
  Illumina 1M v1 or Illumina 1M v3
  PennCNV, QuantiSNP, GNOSIS
 
 
  walker_13_ASD_discovery_controls
  N/A
  Array SNP, solid phase hybridization
  Illumina 1M, Affymetrix 6.0
 
  QuantiSNP, PennCNV, Birdsuite, iPattern, Affymetrix Genotyping Console
  None

Cases

Patient ID
Author, Year
Age
Gender
Primary Diagnosis
Clinical Profile
Cognitive Profile
CNV Start
CNV End
CNV Size
Genome Build
Type Method
Validation
  battaglia_13_DD/ID/ASD_discovery_cases-case73
 4 yrs. 7 mos.
 F
 Developmental delay/intellectual disability
 Autism: no. Epilepsy: no. Dysmorphic features: yes.
 Mild DD/ID
 57668793
 57771265
  102473
 GRCh38
 Duplication
 Yes
  brandler_18_ASD_discovery_cases-caseMT_33.3
 N/A
 F
 ASD
 Case from REACH cohort
 
 61788347
 61801096
  12750
 GRCh38
 Deletion
 Yes
  brandler_18_ASD_discovery_cases-caseREACH000504
 N/A
 F
 ASD
 Case from REACH cohort
 
 61310197
 61957946
  647750
 GRCh38
 Deletion
 No
  costa_21_ASD_discovery_cases-caseP137
  NA NA
 NA
 M
 ASD and seizures
 Case diagnosed with ASD based on DSM-IV or DSM-5 criteria. Additional clinical features: seizures, developmental regression, speech alteration.
 
 61915642
 65214670
  3299029
 GRCh38
 Deletion
 No
  crepel_14_ASD/ID/ADHD_discovery_cases-case1
 8 yrs.
 M
 ASD, ID, and ADHD
 Diagnosis of ASD (ADI-R). Birth/neontal history: born at PML 40 weeks; no neonatal problems. Developmental milestones: slightly delayed motor milestones; global developmental delay (estimated IQ of 71 on Bayley test) and speech delay at age of 3.6 years. Lanaguge and communication evaluation: pronounced delay in speech development with echolalia. Behavioral/psychiatric evaluation: poor communication, poor social interaction, and stereotypic behavior; hyperactivity; severe behavioral problems with destructive behavior. Dysmorphic features: none. Growth parameters: normal length, weight, and head circumference at 5.5 years of age. Family history: second child of unrelated healthy parents. Karyotype: de novo complex chromosomal rearrangement [46, XY, t(3;16;5)(q29;q22;q15)inv4(p14;q21)ins(4;5)(q21;q14.3q15)].
 Mild intellectual disability (WISC-III total IQ score of 52 at age of 8 years)
 64465853
 64970903
  505051
 GRCh38
 Deletion
 Yes
  engchuan_15_ASD_discovery_cases-case1165_3
 N/A
 N/A
 ASD
 Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
 
 62524664
 62654927
  130264
 GRCh38
 Deletion
 No
  engchuan_15_ASD_discovery_cases-case14251_3750
 N/A
 N/A
 ASD
 Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
 
 63059030
 63196579
  137550
 GRCh38
 Deletion
 No
  engchuan_15_ASD_discovery_cases-case3010_3
 N/A
 N/A
 ASD
 Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
 
 65363379
 65689159
  325781
 GRCh38
 Deletion
 No
  engchuan_15_ASD_discovery_cases-case3010_3
 N/A
 N/A
 ASD
 Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
 
 59769019
 59808797
  39779
 GRCh38
 Deletion
 No
  engchuan_15_ASD_discovery_cases-case3025_4
 N/A
 N/A
 ASD
 Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
 
 60211592
 60369573
  157982
 GRCh38
 Deletion
 No
  engchuan_15_ASD_discovery_cases-case3099_8
 N/A
 N/A
 ASD
 Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
 
 61435752
 63077571
  1641820
 GRCh38
 Deletion
 No
  engchuan_15_ASD_discovery_cases-case5206_3
 N/A
 N/A
 ASD
 Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
 
 63394419
 63456309
  61891
 GRCh38
 Deletion
 No
  engchuan_15_ASD_discovery_cases-case5468_3
 N/A
 N/A
 ASD
 Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
 
 63646462
 63684145
  37684
 GRCh38
 Duplication
 No
  gai_11_ASD_replication_cases-AU043903
 
 
 Autism
 
 
 61125373
 61234338
  108966
 Unknown
 Deletion
 No
  granata_25_ASD_discovery_cases-caseA017
 
 M
 ASD
 Case diagnosed with ASD based on DSM-5 criteria.
 
 60031092
 63522009
  3490918
 GRCh38
 Deletion
 No
  iourov_12_ASD/ID/EP_discovery_cases-case44
 4 yrs.
 NA
 Intellectual disability
 Speech delay, neurobehavioral disorder
 Intellectual disability
 59685925
 59894144
  208220
 GRCh38
 Duplication
 No
  krumm_13_ASD_discovery_cases-case13366.p1
 N/A
 M
 ASD
 ASD proband from SSC quad family 13366. SRS score of 74.
 Full-scale IQ (FSIQ) score of 124.
 57562093
 57570535
  8443
 GRCh38
 Deletion
 No (not tested)
  kushima_22_SCZ_discovery_cases-caseSCZ1767
 NA
 NA
 Schizophrenia
 Diagnosis of schizophrenia according to DSM-5 criteria.
 
 64396163
 65234036
  837874
 GRCh38
 Deletion
 Yes
  marshall_08_ASD_discovery_cases-SK0281-003
 NA
 M
 ASD
 NA
 NA
 58951374
 58988495
  37122
 GRCh38
 Deletion
 Yes
  pagnamenta_10b_ASD_discovery_cases_1-case3099-008
 NA
 M
 Autism
 Diagnosis of autism (based on ADI-R & ADOS). Word and phrase delay. Head circumference in 90th-97th percentile. Subject was included in Pinto et al., 2010 CNV study.
 Vineland Adaptive Behavior Scales scores <50 on all domains of socialization, communication, & daily living skills.
 60025584
 61667839
  1640000
 Unknown
 Deletion
 Yes
  pagnamenta_10b_ASD_discovery_cases_2-case3099-006
 NA
 M
 Autism
 Diagnosis of autism (based on ADI-R & ADOS). Word and phrase delay. History of regression. In treatment for language delay & learning disabilities. Head circumference in 90th-97th percentile.
 Vineland Adaptive Behavior Scales scores <50 on all domains of socialization, communication, & daily living skills.
 60025584
 61667839
  1640000
 Unknown
 Deletion
 Yes
  pagnamenta_10b_ASD_discovery_cases_2-case3099-007
 NA
 M
 Autism
 Diagnosis of autism (based on ADI-R & ADOS). Word and phrase delay. Head circumference in 90th-97th percentile.
 Vineland Adaptive Behavior Scales scores <50 on all domains of socialization, communication, & daily living skills.
 60025584
 61667839
  1640000
 Unknown
 Deletion
 Yes
  pagnamenta_10b_LD_discovery_cases-case09_003
 20 yrs. 11 mo.
 M
 Learning disability (LD)
 No diagnosis of autism based on ADI-R (social interaction 6, communication 6, repetitive behaviors 0) and ADOS (social 3, communication 1, play 2) scores. Report of language delay as a child. No history of epilepsy or other comorbid medical problems. Peripheral palsy of right 7 facial nerve reported by 11 yrs, obesity noted at 14 yrs. Brother with CNV has normal IQ but reported history of language delay & treatment for learning disability. Father with CNV scored in borderline IQ range.
 IQ<45 (WAIS-R), significant impairment on Vineland Adaptive Behavior Scales
 60133122
 61956067
  1822946
 GRCh38
 Deletion
 Yes
  pinto_10_ASD_discovery_cases-case1165_3
 NA
 M
 Autism
 Non verbal, poor suck at birth, floppy infant, gastrointestinal problems
 MR
 62524664
 62654927
  130264
 GRCh38
 Deletion
 Yes
  pinto_10_ASD_discovery_cases-case3099_008
 NA
 M
 Autism
 NA
 MR
 61435752
 63077571
  1641820
 GRCh38
 Deletion
 Yes
  prasad_12_ASD_discovery_cases-case100149
 NA
 M
 ASD
 Diagnosis of ASD based on meeting criteria on ADI-R and/or ADOS. Novel CNV
 
 61658969
 61754069
  95101
 Unknown
 Deletion
 No
  prasad_12_ASD_discovery_cases-case50005
 NA
 F
 ASD
 Diagnosis of ASD based on meeting criteria on ADI-R and/or ADOS. CNV identified by previous SNP microarray study
 
 59884789
 59965904
  81116
 Unknown
 Deletion
 No
  prasad_12_ASD_discovery_cases-case64129L
 NA
 M
 ASD
 Diagnosis of ASD based on meeting criteria on ADI-R and/or ADOS. Novel CNV
 
 61827893
 61931858
  103966
 Unknown
 Deletion
 No
  prasad_12_ASD_discovery_cases-case66559
 NA
 M
 ASD
 Diagnosis of ASD based on meeting criteria on ADI-R and/or ADOS. CNV identified by previous SNP microarray study
 
 58258049
 58339983
  81935
 Unknown
 Duplication
 No
  prasad_12_ASD_discovery_cases-case72934
 NA
 M
 ASD
 Diagnosis of ASD based on meeting criteria on ADI-R and/or ADOS. CNV identified by previous SNP microarray study
 
 57535191
 57596514
  61324
 Unknown
 Deletion
 No
  sanders_11_ASD_discovery_cases-11057.p1
 8.7
 M
 Autism
 NA
 Full-scale IQ, 89; non-verbal IQ, 89; verbal IQ, 95
 60530184
 60531754
  1571
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-11101.p1
 5.2
 M
 Autism
 NA
 Full-scale IQ, 46; non-verbal IQ, 57; verbal IQ, 38
 63901782
 63915200
  13419
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-11200.p1
 6.8
 M
 Autism
 NA
 Full-scale IQ, 135; non-verbal IQ, 128; verbal IQ, 134
 63269405
 63384875
  115471
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-11294.p1
 6.2
 M
 Autism
 NA
 Full-scale IQ, 80; non-verbal IQ, 79; verbal IQ 87
 59213779
 59218224
  4446
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-11352.p1
 5.3
 M
 Autism
 NA
 Full-scale IQ, 54; non-verbal IQ, 59; verbal IQ, 60
 60530184
 60531754
  1571
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-11495.p1
 5.2
 M
 Autism
 NA
 Full-scale IQ, 118; non-verbal IQ, 113; verbal IQ, 120
 60530184
 60531754
  1571
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-11505.p1
 6.3
 M
 Autism
 NA
 Full-scale IQ, 76; non-verbal IQ, 85; verbal IQ, 67
 64041792
 64077287
  35496
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-11540.p1
 8.2
 M
 Autism
 NA
 Full-scale IQ, 59; non-verbal IQ, 67; verbal IQ, 55
 61965258
 61987976
  22719
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-11544.p1
 15.5
 M
 Autism
 NA
 Full-scale IQ, 115; non-verbal IQ, 112; verbal IQ, 113
 60530184
 60531754
  1571
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-11913.p1
 4.5
 F
 Autism
 NA
 Full-scale IQ, 102; non-verbal IQ, 99; verbal IQ, 105
 58391064
 58405286
  14223
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-11941.p1
 10.9
 M
 Autism
 NA
 Full-scale IQ, 85; non-verbal IQ, 87; verbal IQ, 86
 61605371
 61617857
  12487
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-12026.p1
 6.6
 M
 Autism
 NA
 Full-scale IQ, 51; non-verbal IQ, 72; verbal IQ, 36
 63394419
 63440015
  45597
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-12041.p1
 6.7
 M
 Autism
 NA
 Full-scale IQ, 108; non-verbal IQ, 119; verbal IQ, 87
 64041792
 64077287
  35496
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-12607.p1
 5.3
 M
 ASD
 NA
 Full-scale IQ, 105; non-verbal IQ, 104; verbal IQ, 104
 58167945
 58175492
  7548
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-12651.p1
 10.8
 M
 Autism
 NA
 Full-scale IQ, 24; non-verbal IQ, 34; verbal IQ, 14
 61582958
 61589662
  6705
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-12782.p1
 13.1
 M
 Autism
 NA
 Full-scale IQ, 74; non-verbal IQ, 76; verbal IQ, 77
 63128700
 63147083
  18384
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-12892.p1
 6.3
 M
 ASD
 NA
 Full-scale IQ, 69; non-verbal IQ, 79; verbal IQ, 63
 63248176
 63362171
  113996
 GRCh38
 Duplication
 No
  sanders_11_ASD_discovery_cases-12961.p1
 4.4
 M
 Autism
 NA
 Full-scale IQ, 115; non-verbal IQ, 125; verbal IQ, 93
 63128700
 63394876
  266177
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-13175.p1
 11.7
 M
 Autism
 NA
 Full-scale IQ, 63; non-verbal IQ, 70; verbal IQ, 52
 63310828
 63341938
  31111
 GRCh38
 Duplication
 No
  sanders_11_ASD_discovery_cases-13222.p1
 17.1
 F
 Autism
 NA
 Full-scale IQ, 87; non-verbal IQ, 86; verbal IQ, 93
 58167945
 58179119
  11175
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-13296.p1
 5.9
 M
 Autism
 NA
 Full-scale IQ, 30; non-verbal IQ, 44; verbal IQ, 15
 63253645
 63362171
  108527
 GRCh38
 Duplication
 No
  szafranski_14_ASD/ADHD/DD/ID/OCD_discovery_cases-case4
 14 yrs.
 M
 Developmental delay
 Case met clinical diagnosis for Marfan syndrome at age of 13 years (tall stature, malar hypoplasia, pectus carinatum and excavatum, slight scoliosis, arachnodactyly, bilateral thumb and signs, hind foot deformities, and dilated aorta); parents have refused further genetic testing to confirm this diagnosis. Developmental milestones: walked at 18 months; first words at 2 years of age. Motor and musculoskeletal evaluation: problems with gross motor activity, difficulty writing for school work activities; mixed pectus deformity that does not require surgery, pes planus, hyperextensibility. Behavioral/psychiatric evaluation: seems to be always fatigues and is sometimes easily distracted; no diagnosis of ADHD has been made. Additional medical history: enlarged aorta; history of neuroblastoma of right adrenal gland. Dysmorphic features: facial asymmetry. Growth parameters: tall stature and macrocephaly; height >97th %ile, weight 90th-97th %ile, head circumference >2 SD (OFC 56 cm).
 Slightly delayed development; consistently performed at or above grade level (homeschooled), but had issues with becoming confused while performing multiple step tasks.
 63137253
 63702741
  565489
 GRCh38
 Deletion
 No
  szatmari_07_ASD_discovery_cases-NAAR026-B4-3099.006
 NA
 
 ASD
 NA
 NA
 61550295
 62990195
  1439901
 GRCh38
 Deletion
 Yes
  szatmari_07_ASD_discovery_cases-NAAR026-C4-3099.007
 NA
 
 ASD
 NA
 NA
 61550295
 62990195
  1439901
 GRCh38
 Deletion
 Yes
  szatmari_07_ASD_discovery_cases-NAAR026-D4-3099.008
 NA
 
 ASD
 NA
 NA
 61550295
 62990195
  1439901
 GRCh38
 Deletion
 Yes
  vissers_20_ASD/DD/ID_discovery_cases-case38
 22 yrs.
 M
 Developmental delay, intellectual disability, and epilepsy/seizures
 Birth/neonatal history: congenital microcephaly (head circumference at birth < -2.0 SD). Developmental milestones: developmental delay, speech delay. Motor and musculoskeletal evaluation: scoliosis, dystonia. Epilepsy: onset at 2 years. Brain imaging: Chiari I malformation. Additional medical history: dysmorphic facial features, aortic root dilation, myopia. Growth parameters: current head circumference < -3.0 SD, short stature (height < -3.0 SD). this patient also had a paternally-inherited 15q11.2 deletion.
 Moderate intellectual disability
 58555230
 58560425
  5196
 GRCh38
 Deletion
 No
  walker_13_ASD_discovery_cases-case2-1175-003
 N/A
 M
 ASD
 N/A
 N/A
 63067270
 63163827
  96558
 GRCh38
 Deletion
 Yes
  walker_13_ASD_discovery_cases-case8-14251-3750
 N/A
 M
 ASD
 N/A
 N/A
 63059030
 63196579
  137550
 GRCh38
 Deletion
 Yes

Controls

Patient ID
Author, Year
Age
Gender
Primary Diagnosis
Clinical Profile
Cognitive Profile
CNV Start
CNV End
CNV Size
Genome Build
Type Method
Validation
  engchuan_15_ASD_discovery_controls-controlB178854_1007854183
  N/A
  N/A
  Control
  No previous psychiatric history
 
  58974213
  59015686
  41474
  GRCh38
  Deletion
  No
  engchuan_15_ASD_discovery_controls-controlB331842_1007873285
  N/A
  N/A
  Control
  No previous psychiatric history
 
  59382807
  59467311
  84505
  GRCh38
  Deletion
  No
  engchuan_15_ASD_discovery_controls-controlB668643_1007875831
  N/A
  N/A
  Control
  No previous psychiatric history
 
  63037283
  63085645
  48363
  GRCh38
  Deletion
  No
  engchuan_15_ASD_discovery_controls-controlB679322_1007874531
  N/A
  N/A
  Control
  No previous psychiatric history
 
  61293707
  61374056
  80350
  GRCh38
  Deletion
  No
  engchuan_15_ASD_discovery_controls-controlB781458_1007853673
  N/A
  N/A
  Control
  No previous psychiatric history
 
  65328830
  65367267
  38438
  GRCh38
  Duplication
  No
  engchuan_15_ASD_discovery_controls-controlB967654_1007872241
  N/A
  N/A
  Control
  No previous psychiatric history
 
  63492312
  63829478
  337167
  GRCh38
  Deletion
  No
  engchuan_15_ASD_discovery_controls-controlHABC_900522_900522
  N/A
  N/A
  Control
  No previous psychiatric history
 
  62088390
  62197459
  109070
  GRCh38
  Duplication
  No
  engchuan_15_ASD_discovery_controls-controlHABC_901090_901090
  N/A
  N/A
  Control
  No previous psychiatric history
 
  58219556
  58288947
  69392
  GRCh38
  Duplication
  No
  engchuan_15_ASD_discovery_controls-controlHABC_901187_901187
  N/A
  N/A
  Control
  No previous psychiatric history
 
  63394876
  63440015
  45140
  GRCh38
  Deletion
  No
  engchuan_15_ASD_discovery_controls-controlHABC_902623_902623
  N/A
  N/A
  Control
  No previous psychiatric history
 
  59382807
  59467311
  84505
  GRCh38
  Deletion
  No
  engchuan_15_ASD_discovery_controls-controlHABC_902827_902827
  N/A
  N/A
  Control
  No previous psychiatric history
 
  63128700
  63388042
  259343
  GRCh38
  Deletion
  No
  krumm_13_ASD_discovery_controls-control13366.s1
  N/A
  F
  Control
  Unaffected sibling from SSC quad family 13366. SRS score of 56.
 
  57562093
  57570535
  8443
  GRCh38
  Deletion
  No (not tested)
  krumm_15_ASD_discovery_controls-control13133.s1
  N/A
  Female
  Control
  Unaffected sibling from the Simons Simplex Collection (SSC)
 
  58676288
  58678474
  2187
  GRCh38
  Deletion
  Yes
  nord_11_ASD_discovery_controls-04C27941
 
 
  Control
 
 
  62053358
  62127270
  73913
  Unknown
  Deletion
 
  sanders_11_ASD_discovery_controls-11071.s1
  20
  F
  Control (matched sibling)
  NA
  NA
  63394419
  63464249
  69831
  GRCh38
  Deletion
  No
  sanders_11_ASD_discovery_controls-11101.s1
  6.7
  F
  Control (matched sibling)
  NA
  NA
  63901782
  63947367
  45586
  GRCh38
  Deletion
  No
  sanders_11_ASD_discovery_controls-11142.s1
  4.5
  F
  Control (matched sibling)
  NA
  NA
  60530184
  60531754
  1571
  GRCh38
  Deletion
  No
  sanders_11_ASD_discovery_controls-11200.s1
  9.5
  F
  Control (matched sibling)
  NA
  NA
  63269405
  63384875
  115471
  GRCh38
  Deletion
  No
  sanders_11_ASD_discovery_controls-11512.s1
  4.3
  F
  Control (matched sibling)
  NA
  NA
  60053426
  60061475
  8050
  GRCh38
  Deletion
  No
  sanders_11_ASD_discovery_controls-11540.s1
  14.7
  F
  Control (matched sibling)
  NA
  NA
  61957706
  61987976
  30271
  GRCh38
  Deletion
  No
  sanders_11_ASD_discovery_controls-11556.s1
  7.3
  F
  Control (matched sibling)
  NA
  NA
  60530184
  60531754
  1571
  GRCh38
  Deletion
  No
  sanders_11_ASD_discovery_controls-11673.s1
  7.9
  M
  Control (matched sibling)
  NA
  NA
  63552586
  63577694
  25109
  GRCh38
  Deletion
  No
  sanders_11_ASD_discovery_controls-11794.s1
  4.3
  F
  Control (matched sibling)
  NA
  NA
  64041792
  64077287
  35496
  GRCh38
  Deletion
  No
  sanders_11_ASD_discovery_controls-11879.s1
  8.1
  M
  Control (matched sibling)
  NA
  NA
  60053426
  60061475
  8050
  GRCh38
  Deletion
  No
  sanders_11_ASD_discovery_controls-11941.s1
  8.7
  F
  Control (matched sibling)
  NA
  NA
  61605371
  61617857
  12487
  GRCh38
  Deletion
  No
  sanders_11_ASD_discovery_controls-11982.s1
  5.1
  F
  Control (matched sibling)
  NA
  NA
  60053426
  60061475
  8050
  GRCh38
  Deletion
  No
  sanders_11_ASD_discovery_controls-12041.s1
  4.3
  M
  Control (matched sibling)
  NA
  NA
  64041792
  64077287
  35496
  GRCh38
  Deletion
  No
  sanders_11_ASD_discovery_controls-12518.s1
  4.7
  F
  Control (matched sibling)
  NA
  NA
  64041792
  64077287
  35496
  GRCh38
  Deletion
  No
  sanders_11_ASD_discovery_controls-12651.s1
  15.8
  M
  Control (matched sibling)
  NA
  NA
  61582958
  61589662
  6705
  GRCh38
  Deletion
  No
  sanders_11_ASD_discovery_controls-12782.s1
  12.9
  F
  Control (matched sibling)
  NA
  NA
  63128700
  63147083
  18384
  GRCh38
  Deletion
  No
  sanders_11_ASD_discovery_controls-12892.s1
  15.4
  F
  Control (matched sibling)
  NA
  NA
  63248176
  63362171
  113996
  GRCh38
  Duplication
  No

Cases

Patient ID
Validation Description
Primary Disorder Inheritence
Inheritence
Family Profile
Disease Segregation
Gene Content
Altered Gene Expression
 battaglia_13_DD/ID/ASD_discovery_cases-case73
 FISH or qPCR
 Paternal
 Paternal
 Possible multi-generational
 Segregated
 DRC7,KATNB1,KIFC3,ADGRG3
 
 brandler_18_ASD_discovery_cases-caseMT_33.3
 PCR or SNP data validation
 
 Maternal
 
 
 CDH8
 
 brandler_18_ASD_discovery_cases-caseREACH000504
 Determined to be false positive after PCR or SNP data validation
 
 Maternal
 
 
 RN7SKP76,CDH8
 
 costa_21_ASD_discovery_cases-caseP137
 
 
 Maternal
 
 
 CDH11,CDH8,RPS15AP34,RNU6-21P,UBE2FP2,LINC02165,LINC02126,PPIAP48,CDH8-AS1
 
 crepel_14_ASD/ID/ADHD_discovery_cases-case1
 qPCR
 
 De novo
 Simplex
 Segregated
 PPIAP48,CDH11
 
 engchuan_15_ASD_discovery_cases-case1165_3
 
 
 Unknown
 
 
 
 
 engchuan_15_ASD_discovery_cases-case14251_3750
 
 
 Unknown
 
 
 UBE2FP2
 
 engchuan_15_ASD_discovery_cases-case3010_3
 
 
 Unknown
 
 
 LINC00922
 
 engchuan_15_ASD_discovery_cases-case3010_3
 
 
 Unknown
 
 
 
 
 engchuan_15_ASD_discovery_cases-case3025_4
 
 
 Unknown
 
 
 
 
 engchuan_15_ASD_discovery_cases-case3099_8
 
 
 Unknown
 
 
 RN7SKP76,RNU6-21P,CDH8
 
 engchuan_15_ASD_discovery_cases-case5206_3
 
 
 Unknown
 
 
 
 
 engchuan_15_ASD_discovery_cases-case5468_3
 
 
 Unknown
 
 
 
 
 gai_11_ASD_replication_cases-AU043903
 
 
 Inherited
 
 
 0 genes
 
 granata_25_ASD_discovery_cases-caseA017
 
 
 Maternal
 
 
 CDH8,RPS15AP34,RPS27AP16,NPAP1L,GNPATP,RNU6-21P,UBE2FP2,LINC02141,RN7SKP76,CDH8-AS1
 
 iourov_12_ASD/ID/EP_discovery_cases-case44
 
 
 Unknown
 Unknown
 Unknown
 APOOP5,LINC02141
 
 krumm_13_ASD_discovery_cases-case13366.p1
 
 
 Maternal
 Simplex
 Not segregated
 ADGRG5
 
 kushima_22_SCZ_discovery_cases-caseSCZ1767
 qRT-PCR
 
 Unknown
 
 
 CDH11,LINC02126,PPIAP48
 
 marshall_08_ASD_discovery_cases-SK0281-003
 qPCR, qmPCR
 
 Unknown
 NA
 NA
 
 
 pagnamenta_10b_ASD_discovery_cases_1-case3099-008
 Long range PCR, Sanger sequencing
 
 Maternal
 Multiplex
 Segregated
 CDH8
 
 pagnamenta_10b_ASD_discovery_cases_2-case3099-006
 Long range PCR, Sanger sequencing
 
 Maternal
 Multiplex
 Segregated
 CDH8
 
 pagnamenta_10b_ASD_discovery_cases_2-case3099-007
 Long range PCR, Sanger sequencing
 
 Maternal
 Multiplex
 Segregated
 CDH8
 
 pagnamenta_10b_LD_discovery_cases-case09_003
 aCGH, qPCR, long range PCR
 
 Paternal
 Possibly multiplex
 Segregated
 GNPATP,RPS27AP16,RN7SKP76,CDH8
 
 pinto_10_ASD_discovery_cases-case1165_3
 Illumina550;Affy5.0
 
 maternal
 NA
 NA
 
 
 pinto_10_ASD_discovery_cases-case3099_008
 LR-PCR,breakpointsequencing,Affy10K-Maternal
 
 maternal
 Multiplex
 Segregated
 RN7SKP76,RNU6-21P,CDH8
 
 prasad_12_ASD_discovery_cases-case100149
 
 
 Unknown
 Unknown
 Unknown
 0 genes
 
 prasad_12_ASD_discovery_cases-case50005
 
 
 Unknown
 Unknown
 Unknown
 0 genes
 
 prasad_12_ASD_discovery_cases-case64129L
 
 
 Unknown
 Unknown
 Unknown
 0 genes
 
 prasad_12_ASD_discovery_cases-case66559
 
 
 Unknown
 Unknown
 Unknown
 0 genes
 
 prasad_12_ASD_discovery_cases-case72934
 
 
 Unknown
 Unknown
 Unknown
 0 genes
 
 sanders_11_ASD_discovery_cases-11057.p1
 
 
 Maternal
 Simplex (quad-proband matched)
 Segregated
 
 
 sanders_11_ASD_discovery_cases-11101.p1
 
 
 Paternal
 Simplex (quad-proband matched)
 Not segregated
 
 
 sanders_11_ASD_discovery_cases-11200.p1
 
 
 Paternal
 Simplex (quad-proband matched)
 Not segregated
 RPS15AP34
 
 sanders_11_ASD_discovery_cases-11294.p1
 
 
 Paternal
 Simplex (trio)
 NA
 
 
 sanders_11_ASD_discovery_cases-11352.p1
 
 
 Paternal
 Simplex (quad-proband matched)
 Not segregated
 
 
 sanders_11_ASD_discovery_cases-11495.p1
 
 
 Maternal
 Simplex (quad-proband matched)
 Not segregated
 
 
 sanders_11_ASD_discovery_cases-11505.p1
 
 
 Maternal
 Simplex (quad-proband matched)
 Not segregated
 
 
 sanders_11_ASD_discovery_cases-11540.p1
 
 
 Maternal
 Simplex (quad-proband matched)
 Not segregated
 CDH8
 
 sanders_11_ASD_discovery_cases-11544.p1
 
 
 Paternal
 Simplex (quad-proband matched)
 Not segregated
 
 
 sanders_11_ASD_discovery_cases-11913.p1
 
 
 Unknown
 Simplex (quad-proband matched)
 Segregated
 GINS3
 
 sanders_11_ASD_discovery_cases-11941.p1
 
 
 Paternal
 Simplex (quad-proband matched)
 Not segregated
 
 
 sanders_11_ASD_discovery_cases-12026.p1
 
 
 Paternal
 Simplex (trio)
 NA
 
 
 sanders_11_ASD_discovery_cases-12041.p1
 
 
 Both parents
 Simplex (quad-proband matched)
 Not segregated
 
 
 sanders_11_ASD_discovery_cases-12607.p1
 
 
 Unknown
 Simplex (trio)
 NA
 CSNK2A2
 
 sanders_11_ASD_discovery_cases-12651.p1
 
 
 Maternal
 Simplex (quad-proband matched)
 Not segregated
 
 
 sanders_11_ASD_discovery_cases-12782.p1
 
 
 Paternal
 Simplex (quad-proband matched)
 Not segregated
 
 
 sanders_11_ASD_discovery_cases-12892.p1
 
 
 Maternal
 Simplex (quad-proband matched)
 Not segregated
 RPS15AP34
 
 sanders_11_ASD_discovery_cases-12961.p1
 
 
 Paternal
 Simplex (trio)
 NA
 UBE2FP2,RPS15AP34
 
 sanders_11_ASD_discovery_cases-13175.p1
 
 
 Paternal
 Simplex (quad-proband matched)
 Segregated
 
 
 sanders_11_ASD_discovery_cases-13222.p1
 
 
 Unknown
 Simplex (quad-proband matched)
 Not segregated
 CSNK2A2
 
 sanders_11_ASD_discovery_cases-13296.p1
 
 
 Paternal
 Simplex (quad-proband matched)
 Not segregated
 RPS15AP34
 
 szafranski_14_ASD/ADHD/DD/ID/OCD_discovery_cases-case4
 
 
 Unknown
 Unknown
 Unknown
 UBE2FP2,RPS15AP34
 
 szatmari_07_ASD_discovery_cases-NAAR026-B4-3099.006
 Karyotyping, qPCR, aCGH, array SNP, or overlap with Mendelian genotype errors
 
 Unknown
 NA
 NA
 RN7SKP76,RNU6-21P,CDH8
 
 szatmari_07_ASD_discovery_cases-NAAR026-C4-3099.007
 Karyotyping, qPCR, aCGH, array SNP, or overlap with Mendelian genotype errors
 
 Unknown
 NA
 NA
 RN7SKP76,RNU6-21P,CDH8
 
 szatmari_07_ASD_discovery_cases-NAAR026-D4-3099.008
 Karyotyping, qPCR, aCGH, array SNP, or overlap with Mendelian genotype errors
 
 Unknown
 NA
 NA
 RN7SKP76,RNU6-21P,CDH8
 
 vissers_20_ASD/DD/ID_discovery_cases-case38
 
 
 De novo
 
 
 SNORA50A,CNOT1
 
 walker_13_ASD_discovery_cases-case2-1175-003
 Long-range PCR or qPCR
 
 Maternal
 Simplex
 Segregated
 
 
 walker_13_ASD_discovery_cases-case8-14251-3750
 Long-range PCR or qPCR
 
 Paternal
 Simplex
 Segregated
 UBE2FP2
 

Controls

Patient ID
Validation Description
Primary Disorder Inheritence
Inheritence
Family Profile
Disease Segregation
Gene Content
Altered Gene Expression
engchuan_15_ASD_discovery_controls-controlB178854_1007854183
 
 
  Unknown
 
 
 
 
engchuan_15_ASD_discovery_controls-controlB331842_1007873285
 
 
  Unknown
 
 
 
 
engchuan_15_ASD_discovery_controls-controlB668643_1007875831
 
 
  Unknown
 
 
 
 
engchuan_15_ASD_discovery_controls-controlB679322_1007874531
 
 
  Unknown
 
 
 
 
engchuan_15_ASD_discovery_controls-controlB781458_1007853673
 
 
  Unknown
 
 
  LINC00922
 
engchuan_15_ASD_discovery_controls-controlB967654_1007872241
 
 
  Unknown
 
 
  LINC02165
 
engchuan_15_ASD_discovery_controls-controlHABC_900522_900522
 
 
  Unknown
 
 
  RNU6-21P
 
engchuan_15_ASD_discovery_controls-controlHABC_901090_901090
 
 
  Unknown
 
 
  CCDC113,PRSS54
 
engchuan_15_ASD_discovery_controls-controlHABC_901187_901187
 
 
  Unknown
 
 
 
 
engchuan_15_ASD_discovery_controls-controlHABC_902623_902623
 
 
  Unknown
 
 
 
 
engchuan_15_ASD_discovery_controls-controlHABC_902827_902827
 
 
  Unknown
 
 
  UBE2FP2,RPS15AP34
 
krumm_13_ASD_discovery_controls-control13366.s1
 
 
  Maternal
  Simplex
 
  ADGRG5
 
krumm_15_ASD_discovery_controls-control13133.s1
  1M-Duov3
 
  Paternal
 
 
  SLC38A7
 
nord_11_ASD_discovery_controls-04C27941
 
 
 
 
 
  0 genes
 
sanders_11_ASD_discovery_controls-11071.s1
 
 
  Maternal
  Simplex (quad)
  NA
 
 
sanders_11_ASD_discovery_controls-11101.s1
 
 
  Paternal
  Simplex (quad)
  NA
 
 
sanders_11_ASD_discovery_controls-11142.s1
 
 
  Maternal
  Simplex (quad)
  NA
 
 
sanders_11_ASD_discovery_controls-11200.s1
 
 
  Paternal
  Simplex (quad)
  NA
  RPS15AP34
 
sanders_11_ASD_discovery_controls-11512.s1
 
 
  Both parents
  Simplex (quad)
  NA
  LINC02141
 
sanders_11_ASD_discovery_controls-11540.s1
 
 
  Maternal
  Simplex (quad)
  NA
  CDH8
 
sanders_11_ASD_discovery_controls-11556.s1
 
 
  Paternal
  Simplex (quad)
  NA
 
 
sanders_11_ASD_discovery_controls-11673.s1
 
 
  Paternal
  Simplex (quad)
  NA
 
 
sanders_11_ASD_discovery_controls-11794.s1
 
 
  Maternal
  Simplex (quad)
  NA
 
 
sanders_11_ASD_discovery_controls-11879.s1
 
 
  Paternal
  Simplex (quad)
  NA
  LINC02141
 
sanders_11_ASD_discovery_controls-11941.s1
 
 
  Paternal
  Simplex (quad)
  NA
 
 
sanders_11_ASD_discovery_controls-11982.s1
 
 
  Maternal
  Simplex (quad)
  NA
  LINC02141
 
sanders_11_ASD_discovery_controls-12041.s1
 
 
  Both parents
  Simplex (quad)
  NA
 
 
sanders_11_ASD_discovery_controls-12518.s1
 
 
  Paternal
  Simplex (quad)
  NA
 
 
sanders_11_ASD_discovery_controls-12651.s1
 
 
  Maternal
  Simplex (quad)
  NA
 
 
sanders_11_ASD_discovery_controls-12782.s1
 
 
  Paternal
  Simplex (quad)
  NA
 
 
sanders_11_ASD_discovery_controls-12892.s1
 
 
  Maternal
  Simplex (quad)
  NA
  RPS15AP34
 

No Animal Model Data Available
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