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16p12.3CNV Type: Deletion-Duplication


Largest CNV size: 1730564 bp

Statistics Box:
Number of Reports: 19



Summary Information

Summary statement in development

Additional Locus Information

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USCS Symbol             NCBI Symbol

Decipher

            Decipher Symbol

References

Major Reports

Title
Author, Year
Report Class
CNV Type
Functional impact of global rare copy number variation in autism spectrum disorders.
Deletion
An evidence-based approach to establish the functional and clinical significance of copy number variants in intellectual and developmental disabili...
Duplication
Both rare and de novo copy number variants are prevalent in agenesis of the corpus callosum but not in cerebellar hypoplasia or polymicrogyria.
Deletion-Duplication
Excess of rare, inherited truncating mutations in autism.
Deletion-Duplication

Minor Reports

Title
Author, Year
Report Class
CNV Type
Rare structural variation of synapse and neurotransmission genes in autism.
Deletion
Multiple recurrent de novo CNVs, including duplications of the 7q11.23 Williams syndrome region, are strongly associated with autism.
Deletion-Duplication
Phenotypic spectrum associated with duplication of Xp11.22-p11.23 includes Autism Spectrum Disorder.
Deletion
Use of array CGH to detect exonic copy number variants throughout the genome in autism families detects a novel deletion in TMLHE.
Deletion
Rare deletions at the neurexin 3 locus in autism spectrum disorder.
Duplication
Contribution of copy number variants involving nonsense-mediated mRNA decay pathway genes to neuro-developmental disorders.
Deletion-Duplication
Rare exonic deletions implicate the synaptic organizer Gephyrin (GPHN) in risk for autism, schizophrenia and seizures.
Deletion-Duplication
Identification of small exonic CNV from whole-exome sequence data and application to autism spectrum disorder.
Deletion-Duplication
Copy number variation in Han Chinese individuals with autism spectrum disorder.
Duplication
Performance of case-control rare copy number variation annotation in classification of autism.
Duplication
RYR2, PTDSS1 and AREG genes are implicated in a Lebanese population-based study of copy number variation in autism.
Duplication
Two de novo variations identified by massively parallel sequencing in 13 Chinese families with children diagnosed with autism spectrum disorder.
Duplication
NA
Duplication
NA
Deletion
NA
Duplication

Cases

Cohort ID
Author, Year
Descripton
Cohort Size
Diagnosis
Age
Gender
CNV Size
Deletion
Duplication
Total CNV's
 allach_el_khattabi_18_ASD/DD/ID_discovery_cases
  NA NA
 Cases with 16p13.11 duplications whom had been referred to 11 French and 1 Belgian genetic centers for various developmental disorders
 45
 The most frequently observed clinical features in cases were speech delay (88%), learning disabilities/intellectual disability (86%), ASD (67%), and motor delay (49%).
 Range, 6 months-25 years
 48.89% Male
 1256857
 0
 1
 1
 celestino-soper_11_ASD_discovery_cases
 ASD probands from Simons Simplex Collection (SSC) trios. 90 of the probands in this study were also used in the Sanders et al. 2011 CNV report.
 99
 ASD
 
 87.88% Male
 2039
 1
 0
 1
 chehbani_22_ASD_discovery_cases
  NA NA
 Patients recruited between January and April 2017 at the Child and Adolescent Psychiatry Clinic of the Department of Psychiatry, Fattouma Bourguiba University Hospital (Monastir, Tunisia); 91 patients were from simplex families, and 7 from multiplex families.
 98
 Clinical diagnosis of ASD based on DSM-IV and confirmed by ADI-R and ADOS.
 Range, 3-18 yrs.
 84.69% Male
 98738
 0
 1
 1
 chung_11_ASD_discovery_cases
 Autistic female proband; second child of healthy, non-consanguineous parents (first child developmentally normal)
 1
 ASD (ADI-R and ADOS, Module 3)
 12
 Female
 21713
 1
 0
 1
 engchuan_15_ASD_discovery_cases
 Samples from the Autism Genome Project (AGP)
 1892
 Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
 N/A
 85.78% Male
 546482
 0
 1
 1
 gai_11_ASD_discovery_cases
 Discovery case samples derived from AGRE set 4 (most recent patient recruitment)
 631
 Idiopathic autism; cases designated as 'spectrum' and 'not quite autism' excluded, as were cases with known genetic syndromes or other non-idiopathic causes
 
 
 314114
 1
 0
 1
 gazzellone_14_ASD_discovery_cases
 ASD-affected individuals referred to the Children Development and Behavior Research Center (CDRBC) at Harbin Medical University, China, between January 2007 and June 2011.
 104
 Diagnosis of ASD made using Autism Behavior Checklist (ABC) and Childhood Autism Rating Scale (CARS)
 Mean age at enrollment, 4.31 1.80 yrs.
 87.5% Male
 23040
 0
 1
 1
 han_22_ASD/DD/ID_discovery_cases
  NA NA
 Probands with ASD or unexplained developmental delay/intellectual disability with or without other congenital anomalies from Shandong province in Northern China who were referred for genetic services from January 2014 to December 2018.
 410
 151 cases diagnosed with ASD (DSM-5 criteria, ADOS-2, confirmed by CARS score > 30) and 259 patients diagnosed with developmental delay/intellectual disability (DSM-5 criteria, confirmed by Gesell developmental scale DQ score < 75 and Wechsler Intelligence Scale for Children-Revised with IQ<70).
 Mean age, 2 yrs. 11 mos.
 68.78% Male
 74989
 1
 0
 1
 kaminsky_11_DD/ID/ASD_discovery_cases
 Cases from the International Standards for Cytogenomic Arrays (ISCA) consortium
 15749
 Unexplained developmental delay, intellectual disability, dysmorphic features, multiple congenital anomalies, autism spectrum disorders, or clinical features suggestive of a chromosomal syndrome
 NA
 NA
 600698
 0
 1
 1
 krumm_15_ASD_discovery_cases
 Probands from the Simons Simplex Collection
 2377
 Diagnosis of ASD
 N/A
 N/A
 249356
 2
 1
 3
 lionel_13_ASD/SCZ/EP_discovery_cases
 Patient cohort composed of 1158 Canadian ASD patients, 72 Austrian ASD patients, 450 Canadian schizophrenia patients, and a clinical dataset of 3704 individuals with primary diagnosis of ASD and/or seizure disorder referred for clinical microarray testing at the Mayo Clinic cytogenetics laboratory.
 5384
 ASD (n=1230), schizophrenia (n=450), and ASD and/or seizure disorder (n=3704). Canadian and Austrian ASD patients met criteria for ASD diagnosis based on ADI-R and/or ADOS.
 NA
 NA
 537218
 1
 1
 2
 li_18_ASD_discovery_cases
 Children from 13 ASD trio families recruited at the Department of Pediatrics of the Chinese PLA General Hospital for Autism Research
 13
 Diagnosis of ASD made according to DSM-IV
 Mean age, 4.56 0.97 years
 92.31% Male
 526488
 0
 1
 1
 nguyen_13_DD/ID/MCA/ASD_discovery_cases
 Patients from the Developmental Gene Anatomy Project at Harvard Medical School (DGAP), the Developmental Gene Discovery Project at Georgia Health Sciences University (DGDP), the National Institute of General Medical Sciences Human Genetic Cell Repository (NIGMS), the Signature Genomic Laboratories Genoglyphix Chromosome Aberration Database, and DECIPHER
 57365
 Predominant cohort diagnosis of developmental delay/intellectual disability and/or mulitple congenital anomalies (MCA); 5 cases with additional diagnosis of autism/ASD
 N/A
 N/A
 N/A
 3
 3
 6
 pinto_10_ASD_discovery_cases
 Autism Genome Project (AGP) consortium patient cohort from families with at least two ASD individuals
 996
 ASD (ADI-R and ADOS): strict, broad, or spectrum ASD
 
 
 1730564
 1
 0
 1
 poultney_13_ASD_discovery_cases
 ASD cases of European ancestry from AGRE retained after filtering (original cohort size of 432 cases)
 299
 Cases diagnosed with ASD
 N/A
 79.86% Male (before filtering)
 85969
 3
 1
 4
 sajan_13_ACC/CBLH/PMG_discovery_cases
 Individuals with severe congenital brain malformations [agenesis of the corpus callosum (ACC), cerebellar hypoplasia (CBLH), and/or polymicrogyria (PMG)] and additional neurodevelopmental phenotypes
 487
 Diagnosis of agenesis of the corpus callosum (ACC), cerebellar hypoplasia (CBLH), and/or polymicrogyria (PMG); additional diagnoses of autism spectrum disorder (ASD), developmental delay (DD), intellectual disability (ID) and/or seizures in some patients
 N/A
 N/A
 242068
 1
 1
 2
 sanders_11_ASD_discovery_cases
 Autistic probands from the Simons Simplex Collection (SSC). 872 probands in quartet families, 272 probands in trios.
 1124
 ASD diagnosis: 89.5% autism; 8.5% PDD-NOS, 2% Asperger syndrome. Mean full-scale IQ 85.1 1.5 (mean verbal IQ, 81.9 1.7; mean non-verbal IQ, 88.4 1.4)
 Mean, 9.1 yrs.
 86.1% Male
 440689
 1
 11
 12
 soueid_16_ASD_discovery_cases
 Autistic children; 37/41 from 35 fully analyzed families (33 simplex, 2 multiplex)
 41
 All cases fulfilled DSM-V criteria for autism
 Range, 3-18 yrs.
 92.68% Male
 564000
 0
 2
 2
 soueid_16_DD/ID_discovery_cases
 Individuals referred to clinical neurogenetics service with non-syndromic developmental delay and intellectual disabilities (DD/ID) or rare neurological syndromes
 35
 Cases present with non-syndromic developmental delay and intellectual disabilities (DD/ID) or rare neurological syndromes
 N/A
 N/A
 0
 0
 0
 0
 vaags_11_ASD_replication_cases_2
 Replication cohort consisting of patients referred to the Mayo Clinic
 1796
 Autism or pervasive developmental disorder (PDD)
 NA
 NA
 545311
 0
 1
 1

Controls

Cohort ID
Author, Year
Descripton
Cohort Size
Diagnosis
Age
Gender
CNV Size
Deletion
Duplication
Total CNV's
 engchuan_15_ASD_discovery_controls
 Platform-matched controls from three large studies: SAGE (Study of Addiction Genetics and Environment), Ontario Colorectal Cancer study, and HABC (Health Aging and Body Composition)
 2342
 Controls; subjects had no previous psychiatric history
 N/A
 46.67% Male
 508100
 1
 6
 7
 kaminsky_11_DD/ID/ASD_discovery_controls
 Controls from the International Standards for Cytogenomic Arrays (ISCA) consortium
 10118
 Controls
 NA
 NA
 NA
 NA
 NA
 NA
 kanduri_15_ASD_discovery_controls
 Unrelated Finnish samples from the cohort of Health 2000 survey from an initial sample of 288 individuals following quality control
 269
 Controls screened for DSM-IV mental disorders using the Composite International Diagnostic Interview and psychotic disorders using the research version of the Structured Clinical Interview for DSM-IV
 N/A
 N/A
 20674
 1
 1
 2
 krumm_13_ASD_discovery_controls
 Unaffected siblings of ASD probands from quad families ascertained as part of the Simons Simplex Collection (SSC); CNVs detected using data from four previously published exome sequencing studies (O'Roak et al., 2011; Iossifov et al., 2012; O'Roak et al., 2012; Sanders et al., 2012)
 411
 Control (unaffected siblings of ASD probands). Social Responsiveness Scale (SRS) used as a quantitative measure of social deficits
 N/A
 46.47% Male
 60301
 0
 1
 1
 krumm_15_ASD_discovery_controls
 Unaffected siblings from quad families from the Simons Simplex Collection
 1786
 Control
 N/A
 N/A
 240405
 2
 1
 3
 leblond_19_ASD_discovery_controls
 Control cohort consisting of 136 unaffected relatives of ASD cases and 185 non-autism controls
 321
 Control
 N/A
 N/A
 55660
 0
 1
 1
 levy_11_ASD_discovery_controls
 Unaffected siblings of autistic probands from 887 families from the Simons Simplex Collection (SSC)
 863
 Control
 
 47.97% Male
 89889
 1
 0
 1
 nguyen_13_DD/ID/MCA/ASD_discovery_controls
 Control data from the Database of Genomic Variants (DGV, n=12,145) and a published dataset of 8,329 individuals from Moriarty et al., 1998.
 20474
 Control
 N/A
 N/A
 N/A
 9
 5
 14
 poultney_13_ASD_discovery_controls
 Controls matched for European ancestry from NIMH and CEPH retained after filtering (original cohort size of 379 controls)
 260
 Control
 N/A
 47.49% Male (before filtering)
 85969
 1
 0
 1
 sanders_11_ASD_discovery_controls
 Matched siblings of autistic probands from the Simons Simplex Collection (SSC).
 872
 Controls
 Mean, 10.0 yrs.
 
 1468800
 1
 5
 6
 soueid_16_ASD_discovery_controls
 Control cohort of normal participants
 37
 Control
 N/A
 51.35% Male
 0
 0
 0
 0

Cases

Cohort ID
Geographical Ancestry
Discovery Method
Platform
Algorithm
Software
Validation Method
 allach_el_khattabi_18_ASD/DD/ID_discovery_cases
  France, Belgium
 aCGH, solid phase hybridization
  Agilent 44K, Agilent 60K, Agilent 105K, Agilent 180K, Illumina HumanHap300, Illumina HumanCytoSNP-12
 
 
 None
 celestino-soper_11_ASD_discovery_cases
 
 aCGH
  Agilent 1M
 ADM-2
 Agilent Feature Extraction v10.7.3.1, Agilent DNA Analytics v4.0.76
 None
 chehbani_22_ASD_discovery_cases
  Tunisia
 aCGH
  Agilent SurePrint G3
 ADM-2
 Agilent Cytogenomic v.4.0.3.12.
 None
 chung_11_ASD_discovery_cases
  Scottish-Canadian
 Array SNP
  Affymetrix 6.0
 HMM
 Affymetrix Genotyping Console v.2.1, Birdseed v.2
 
 engchuan_15_ASD_discovery_cases
  Caucasian
 Solid phase hybridization
  Illumina 1M
 
 
 None
 gai_11_ASD_discovery_cases
  European
 Solid phase hybridization
  Illumina Infinium II HumanHap550 BeadChip
 
 BeadStudio 3.0
 None
 gazzellone_14_ASD_discovery_cases
  Han Chinese
 Array SNP
  Affymetrix CytoScan HD
 ChAS, iPattern, Nexus, Partek
 
 None
 han_22_ASD/DD/ID_discovery_cases
  Han Chinese
 Array SNP
  Affymetrix SNP 6.0, Affymetrix CytoScan HD
 
 
 
 kaminsky_11_DD/ID/ASD_discovery_cases
  NA
 aCGH
  Agilent 44K, Agilent 105K
 
 Feature Extraction, DNA Analytics
 FISH, qPCR, MLPA, aCGH, standard G-banded chromosome analysis
 krumm_15_ASD_discovery_cases
  N/A
 WES
 
 CoNIFER, XHMM
 
 Solid phase hybridization (Illumina 1M, 1 M Duo, or Omni 2.5)
 lionel_13_ASD/SCZ/EP_discovery_cases
  NA
 aCGH, array SNP
  Agilent ISCA 44K, Agilent 180K, Affymetrix 6.0
 
 Agilent DNA Analytics, Birdsuite, iPattern, Affymetrix Genotyping Console
 None
 li_18_ASD_discovery_cases
  Chinese
 Low-coverage WGS
  Illumina HiSeq 2000 or 2500 analyzers
 PSCC
 
 None
 nguyen_13_DD/ID/MCA/ASD_discovery_cases
  N/A
 aCGH
  SignatureChip BACs aCGH, SignatureChip Oligo whole-genome microarray
 
 
 N/A
 pinto_10_ASD_discovery_cases
  European
 Solid phase hybridization
  Illumina Infinium 1M SNP microarray
 QuantiSNP, iPattern
 
 qPCR, long-range PCR (LR-PCR), MLPA, FISH, aCGH (Agilent 1M), array SNP (Affymetrix 500K)
 poultney_13_ASD_discovery_cases
  European
 WES
  Agilent SureSelect Human All Exon v.2
 XHMM
 
 None
 sajan_13_ACC/CBLH/PMG_discovery_cases
  81.31% Caucasian
 Solid phase hybridization
  Illumina InfiniumII HumanHap610
 PennCNV
 
 qPCR
 sanders_11_ASD_discovery_cases
  White non-Hispanic, 74.5%; mixed, 9.3%, Asian, 4.3%, White Hispanic, 4.0%, African-American, 3.8%; other, 4.2&
 Solid phase hybridization
  Illumina 1M v1, Illumina 1M v3
 PennCNV, QuantiSNP, GNOSIS
 
 
 soueid_16_ASD_discovery_cases
  Lebanon
 Array SNP
  Affymetrix 2.7M, Affymetrix CytoScan
 
 Affymetrix ChAS
 None
 soueid_16_DD/ID_discovery_cases
  Lebanon
 Array SNP
  Affymetrix 2.7M, Affymetrix CytoScan
 
 Affymetrix ChAS
 None
 vaags_11_ASD_replication_cases_2
  NA
 aCGH
  Agilent 44K & 244K
 
 
 None

Controls

Cohort ID
Geographical Ancestry
Discovery Method
Platform
Algorithm
Software
Validation Method
  engchuan_15_ASD_discovery_controls
  Caucasian
  Solid phase hybridization
  Illumina 1M
 
 
  None
  kaminsky_11_DD/ID/ASD_discovery_controls
  NA
  aCGH
  Agilent 44K, Agilent 105K
 
  Feature Extraction, DNA Analytics
 
  kanduri_15_ASD_discovery_controls
  Finnish
  Solid phase hybridization
  Illumina Infinium HD Human610-Quad BeadChip
  QuantiSNP, PennCNV
  Illumina BeadStudio
  None
  krumm_13_ASD_discovery_controls
  N/A
  WES
  Whole exome sequencing platforms used in four recent publications (O'Roak et al., 2011; Sanders et al., 2012; O'Roak et al., 2012, and Iossifov et al., 2012)
  DNACopy, CGHCall
  CoNIFER
  None
  krumm_15_ASD_discovery_controls
  N/A
  WES
 
  CoNIFER, XHMM
 
  Solid phase hybridization (Illumina 1M, 1 M Duo, or Omni 2.5)
  leblond_19_ASD_discovery_controls
  Faroe Islands
  Solid phase hybridization, WES
  Illumina Infinium IlluminaOmni5-4 BeadChip, AgilentSureSelect Human All Exon V5
  PennCNV, QuantiSNP
  XHMM
  None
  levy_11_ASD_discovery_controls
 
  aCGH
  NimbleGen HD2
  HMM
 
 
  nguyen_13_DD/ID/MCA/ASD_discovery_controls
  N/A
  N/A
  N/A
 
 
  N/A
  poultney_13_ASD_discovery_controls
  European
  WES
  Agilent SureSelect Human All Exon v.2
  XHMM
 
  None
  sanders_11_ASD_discovery_controls
 
  Solid phase hybridization
  Illumina 1M v1 or Illumina 1M v3
  PennCNV, QuantiSNP, GNOSIS
 
 
  soueid_16_ASD_discovery_controls
  Lebanon
  Array SNP
  Affymetrix 2.7M, Affymetrix CytoScan
 
  Affymetrix ChAS
  None

Cases

Patient ID
Author, Year
Age
Gender
Primary Diagnosis
Clinical Profile
Cognitive Profile
CNV Start
CNV End
CNV Size
Genome Build
Type Method
Validation
  allach_el_khattabi_18_ASD/DD/ID_discovery_cases-case33
  NA NA
 2 yrs.
 M
 Motor delay and macrocephaly
 Birth/neonatal history: prenatal period marked by macrocephaly; birth weight 90th %ile, length 90th %ile, OFC > 97th %ile; neonatal hypotonia. Developmental milestones: motor delay. Brain imaging: delayed myelination. Visual evaluation: nystagmus.
 
 16713139
 17969995
  1256857
 GRCh38
 Duplication
 No
  celestino-soper_11_ASD_discovery_cases-11418
 NA
 M
 ASD
 NA
 NA
 18792479
 18794518
  2040
 GRCh38
 Deletion
 No
  chehbani_22_ASD_discovery_cases-case2
  NA NA
 NA
 M
 ASD
 Case diagnosed with ASD based on DSM-IV criteria and confirmed by ADI-R and ADOS-2. Case also presented with developmental regression.
 
 19092263
 19191000
  98738
 GRCh38
 Duplication
 No
  chung_11_ASD_discovery_cases-proband
 12
 F
 ASD
 Diagnosed with ASD at 8 using ADI-R & ADOS, Module 3. Moderate language delay. Comorbid behavior includes anxiety disorders, aggressive behaviors, self-injurious behaviors, sleep disturbances, & trichotillomania. No history of developmental regression. No history of seizures; normal EEG. Dysmorphic features: high anterior hairline, long face with prognathism, long nose, broad nasal bridge with underdeveloped alae nasi, asymmetic ears, narrow mouth. Camptodactyly, mild 2/3 cutaneous syndactyly, flat narrow feet, shortened 5th toes. Normal eyes and eyebrows. Prominent hypotonia. Brain MRI at 5 revealed mild prominence of Virchow-Robin spaces without any structural abnormalities. Growth parameters: height, weight, & head circumference all >97th %ile.
 WISC-IV assessment: at 7 yrs., 32nd %ile (average range); at 9 yrs., 2nd-8th %ile (borderline range)
 19934316
 19956028
  21713
 GRCh38
 Deletion
 No
  engchuan_15_ASD_discovery_cases-case5298_3
 N/A
 N/A
 ASD
 Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
 
 18151808
 18780825
  629018
 GRCh38
 Duplication
 No
  gai_11_ASD_discovery_cases-AU0938301
 
 
 Autism
 
 
 17758086
 18072199
  314114
 Unknown
 Deletion
 No
  gazzellone_14_ASD_discovery_cases-case514-3
 N/A
 M
 ASD
 ASD; no other clinical information provided
 N/A
 17846809
 17869849
  23041
 GRCh38
 Duplication
 No
  han_22_ASD/DD/ID_discovery_cases-case19D0779
  NA NA
 2 yrs. 4 mos.
 M
 Developmental delay
 
 
 19971610
 20046598
  74989
 GRCh38
 Deletion
 No
  kaminsky_11_DD/ID/ASD_discovery_cases-ISCA00004323
 NA
 NA
 Developmental delay/intellectual disability/ASD
 Clinical profile NA
 Cognitive profile NA
 18658344
 19259042
  600699
 GRCh38
 Duplication
 Yes
  krumm_15_ASD_discovery_cases-case12009.p1
 N/A
 Male
 ASD
 Proband from the Simons Simplex Collection (SSC). Family type: Trio
 
 20326337
 20399300
  72964
 GRCh38
 Duplication
 Yes
  krumm_15_ASD_discovery_cases-case13307.p1
 N/A
 Male
 ASD
 Proband from the Simons Simplex Collection (SSC). Family type: Quad
 
 17108694
 17358050
  249357
 GRCh38
 Deletion
 Yes
  krumm_15_ASD_discovery_cases-case13602.p1
 N/A
 Male
 ASD
 Proband from the Simons Simplex Collection (SSC). Family type: Quad
 
 21019623
 21054534
  34912
 GRCh38
 Deletion
 Yes
  lionel_13_ASD/SCZ/EP_discovery_cases-proband1
 13 yrs.
 F
 ASD
 Diagnosis of high-functioning ASD made following assessment at 13 years of age using ADOS and ADI-R. Birth/neonatal history: uncomplicated pregnancy; delivery at 38 weeks of gestation. Developmental milestones: walking at 12 months, otherwise had slow motor development and gait issues, which prompted ergotherapy; language delay with no speech at 2 yrs., followed by gradual speech development by 4 yrs. Language and communication evaluation: episodes of echolalia. Behavioral/psychiatric evaluation: up to 6 years of age, case continued to desire swaddling and had hypersensitivty to light and sound associated with self-injury (head banging, tearing hair). Dysmorphic features: none reported. Family history: non-consanguineous parents; no reported medical or neuropsychiatric conditions in parents or two older siblings.
 Completed secondary school degree with exception of mathematics
 19934328
 19956040
  21713
 GRCh38
 Deletion
 No
  lionel_13_ASD/SCZ/EP_discovery_cases-proband3
 15 yrs.
 M
 ASD and ID
 Diagnosis of ASD (pervasive developmental disorder/PDD) at age of 4 years by child psychologist on basis of behavioral assessments. Birth/neonatal history: uncomplicated pregnancy; natural delivery. Developmental milestones: crawling at 7 months, walking at 15 months; developmental delay noticed by parents at age two, two months after serious encephalitic illness that required hospitalization; speech and language delay (did not talk until approximately 4 years of age). Behavioral/psychiatric evaluation: continued behavioral issues including anxiety, OCD, tics, and impulsive, sometimes aggressive behaviors; frequently talks to himself, trouble concentrating and sitting still. Epilepsy/seizures: cyclical seizures began at time of encephalitic illness and recurred until age of 6 years; subsequently seizure-free without anti-convulsant treatment. Other features: clinical metabolic testing for molybdenum cofactor (MoCo) deficiency performed (negative results) after detection of de novo 14q23.3/GPHN deletion. Dysmorphic features: N/A. Family history: N/A.
 Intellectual disability
 18148727
 18768479
  619753
 GRCh38
 Duplication
 No
  li_18_ASD_discovery_cases-case4701
 N/A
 M
 ASD
 Diagnosis of ASD made according to DSM-IV
 
 18168042
 18777065
  609024
 GRCh38
 Duplication
 No
  nguyen_13_DD/ID/MCA/ASD_discovery_cases-patient179
 N/A
 N/A
 DD/ID/MCA
 N/A
 N/A
 N/A
 N/A
  N/A
 GRCh37
 Deletion
 N/A
  nguyen_13_DD/ID/MCA/ASD_discovery_cases-patient180
 N/A
 N/A
 DD/ID/MCA
 N/A
 N/A
 N/A
 N/A
  N/A
 GRCh37
 Deletion
 N/A
  nguyen_13_DD/ID/MCA/ASD_discovery_cases-patient181
 N/A
 N/A
 DD/ID/MCA
 N/A
 N/A
 N/A
 N/A
  N/A
 GRCh37
 Deletion
 N/A
  nguyen_13_DD/ID/MCA/ASD_discovery_cases-patient182
 N/A
 N/A
 DD/ID/MCA
 N/A
 N/A
 N/A
 N/A
  N/A
 GRCh37
 Duplication
 N/A
  nguyen_13_DD/ID/MCA/ASD_discovery_cases-patient183
 N/A
 N/A
 DD/ID/MCA
 N/A
 N/A
 N/A
 N/A
  N/A
 GRCh37
 Duplication
 N/A
  nguyen_13_DD/ID/MCA/ASD_discovery_cases-patient184
 N/A
 N/A
 DD/ID/MCA
 N/A
 N/A
 N/A
 N/A
  N/A
 GRCh37
 Duplication
 N/A
  pinto_10_ASD_discovery_cases-case5437_3
 NA
 M
 Autism
 Language delay, diffuse pontine glioma
 Average IQ
 16538314
 18268877
  1730564
 Unknown
 Deletion
 Yes
  poultney_13_ASD_discovery_cases-case04HI3189A
 N/A
 F
 ASD
 ASD case from AGRE (AGRE ID AU1282302; NDAR ID NDAR_INVAR158VXX)
 
 20460113
 20483179
  23067
 GRCh38
 Deletion
 No
  poultney_13_ASD_discovery_cases-case04HI3189A
 N/A
 F
 ASD
 ASD case from AGRE (AGRE ID AU1282302; NDAR ID NDAR_INVAR158VXX)
 
 20540652
 20564847
  24196
 GRCh38
 Duplication
 No
  poultney_13_ASD_discovery_cases-case98HI0075B
 N/A
 M
 ASD
 ASD case from AGRE (AGRE ID AU026803; NDAR ID NDAR_INVXB588TAR)
 
 20915554
 20948639
  33086
 GRCh38
 Deletion
 No
  poultney_13_ASD_discovery_cases-case98HI0266B
 N/A
 M
 ASD
 ASD case from AGRE (AGRE ID AU017504; NDAR ID NDAR_INVWK082CR2)
 
 20469510
 20555478
  85969
 GRCh38
 Deletion
 No
  sajan_13_ACC/CBLH/PMG_discovery_cases-case1028-0
 N/A
 N/A
 ACC
 Diagnosis of agenesis of the corpus callosum (ACC). ASD: yes. Seizures: no.
 Developmental delay: yes. Intellectual disability: yes.
 18795989
 19038056
  242068
 GRCh38
 Duplication
 Yes
  sajan_13_ACC/CBLH/PMG_discovery_cases-case1221-0
 N/A
 N/A
 ACC-PMG
 Diagnosis of agenesis of the corpus callosum (ACC) and polymicrogyria (PMG). ASD: unknown. Seizures: unknown.
 Developmental delay: unknown. Intellectual disability: unknown.
 19159095
 19190065
  30971
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-11049.p1
 7.6
 M
 Autism
 NA
 Full-scale IQ, 129; non-verbal IQ, 134; verbal IQ, 107
 18205077
 18684618
  479542
 GRCh38
 Duplication
 No
  sanders_11_ASD_discovery_cases-11429.p1
 11.3
 M
 Autism
 NA
 Full-scale IQ, 99; non-verbal IQ, 97; verbal IQ, 102
 18151808
 18190190
  38383
 GRCh38
 Duplication
 No
  sanders_11_ASD_discovery_cases-11590.p1
 10.8
 M
 Autism
 NA
 Full-scale IQ, 97; non-verbal IQ, 102; verbal IQ, 98
 18162067
 18173653
  11587
 GRCh38
 Duplication
 No
  sanders_11_ASD_discovery_cases-11641.p1
 8.5
 M
 Autism
 NA
 Full-scale IQ, 93; non-verbal IQ, 101; verbal IQ, 82
 18216662
 18739886
  523225
 GRCh38
 Duplication
 No
  sanders_11_ASD_discovery_cases-11963.p1
 6.1
 M
 ASD
 NA
 Full-scale IQ, 93; non-verbal IQ, 90; verbal IQ, 104
 18074566
 18152350
  77785
 GRCh38
 Duplication
 No
  sanders_11_ASD_discovery_cases-12009.p1
 6.8
 M
 Autism
 NA
 Full-scale IQ, 78; non-verbal IQ, 87; verbal IQ, 69
 20327809
 20409610
  81802
 GRCh38
 Duplication
 No
  sanders_11_ASD_discovery_cases-12175.p1
 5.1
 M
 Autism
 NA
 Full-scale IQ, 71; non-verbal IQ, 73; verbal IQ, 79
 18242234
 18260866
  18633
 GRCh38
 Duplication
 No
  sanders_11_ASD_discovery_cases-12184.p1
 12.9
 F
 Autism
 NA
 Full-scale IQ, 28; non-verbal IQ, 31; verbal IQ, 21
 18260366
 18267519
  7154
 GRCh38
 Duplication
 No
  sanders_11_ASD_discovery_cases-12321.p1
 11.2
 M
 Autism
 NA
 Full-scale IQ, 96; non-verbal IQ, 108; verbal IQ, 76
 18242234
 18260866
  18633
 GRCh38
 Duplication
 No
  sanders_11_ASD_discovery_cases-12351.p1
 13.6
 M
 Autism
 NA
 Full-scale IQ, 48; non-verbal IQ, 68; verbal IQ, 37
 19014228
 19027388
  13161
 GRCh38
 Deletion
 No
  sanders_11_ASD_discovery_cases-12652.p1
 8.3
 M
 Autism
 NA
 Full-scale IQ, 73; non-verbal IQ, 79; verbal IQ, 69
 20535224
 20556780
  21557
 GRCh38
 Duplication
 No
  sanders_11_ASD_discovery_cases-13085.p1
 14.8
 M
 ASD
 NA
 Full-scale IQ, 82; non-verbal IQ, 78; verbal IQ, 95
 18242234
 18274249
  32016
 GRCh38
 Duplication
 No
  soueid_16_ASD_discovery_cases-caseSAI33
 N/A
 
 Autism
 Case fulfilled DSM-V criteria for autism; no other information available
 
 18142239
 18685424
  543186
 GRCh38
 Duplication
 No
  soueid_16_ASD_discovery_cases-caseSAI33
 N/A
 
 Autism
 Case fulfilled DSM-V criteria for autism; no other information available
 
 16199683
 16763674
  563992
 GRCh38
 Duplication
 No
  vaags_11_ASD_replication_cases_2-probandF4-003
 3 yrs. 6 mos.
 M
 Autism
 Diagnosis of autism based on clinical diagnosis, C-TRF (Caregiver-Teacher Report Form), and DSM-Oriented Scales for Boys (>97th %ile). Aggression, anger, anxiety, temper tantrums, social avoidance, sucking and biting of hands and fingers, sleep-onset disorder, upper-body hypotonia, thumb-flexion difficulty, oppositional defiance, previous head banging, and prior speech delay
 Leiter-R IQ: incomplete (test attempted but proband failed to complete)
 18148727
 18776572
  627846
 GRCh38
 Duplication
 No

Controls

Patient ID
Author, Year
Age
Gender
Primary Diagnosis
Clinical Profile
Cognitive Profile
CNV Start
CNV End
CNV Size
Genome Build
Type Method
Validation
  engchuan_15_ASD_discovery_controls-control110036020642_
  N/A
  N/A
  Control
  No previous psychiatric history
 
  16871248
  17002619
  131372
  GRCh38
  Duplication
  No
  engchuan_15_ASD_discovery_controls-controlB220230_1007853908
  N/A
  N/A
  Control
  No previous psychiatric history
 
  17271248
  17344077
  72830
  GRCh38
  Deletion
  No
  engchuan_15_ASD_discovery_controls-controlB256025_1007875987
  N/A
  N/A
  Control
  No previous psychiatric history
 
  18190190
  18780825
  590636
  GRCh38
  Duplication
  No
  engchuan_15_ASD_discovery_controls-controlB294025_1007842040
  N/A
  N/A
  Control
  No previous psychiatric history
 
  20435638
  20692491
  256854
  GRCh38
  Duplication
  No
  engchuan_15_ASD_discovery_controls-controlB322144_1007854009
  N/A
  N/A
  Control
  No previous psychiatric history
 
  18971363
  19011126
  39764
  GRCh38
  Duplication
  No
  engchuan_15_ASD_discovery_controls-controlB525694_1007854064
  N/A
  N/A
  Control
  No previous psychiatric history
 
  18937444
  19070124
  132681
  GRCh38
  Duplication
  No
  engchuan_15_ASD_discovery_controls-controlHABC_901248_901248
  N/A
  N/A
  Control
  No previous psychiatric history
 
  19582729
  19664122
  81394
  GRCh38
  Duplication
  No
  kanduri_15_ASD_discovery_controls-control_split1032
  N/A
  N/A
  Control
  Control screened for DSM-IV mental disorders using the Composite International Diagnostic Interview and psychotic disorders using the research version of the Structured Clinical Interview for DSM-IV
 
  20547076
  20565585
  18510
  Unknown
  Deletion
  No
  kanduri_15_ASD_discovery_controls-control_split1032
  N/A
  N/A
  Control
  Control screened for DSM-IV mental disorders using the Composite International Diagnostic Interview and psychotic disorders using the research version of the Structured Clinical Interview for DSM-IV
 
  20478724
  20499397
  20674
  Unknown
  Duplication
  No
  krumm_13_ASD_discovery_controls-control13593.s1
  N/A
  M
  Control
  Unaffected sibling from SSC quad family 13593. SRS score N/A.
 
  19591789
  19652090
  60302
  GRCh38
  Duplication
  No (not tested)
  krumm_15_ASD_discovery_controls-control13307.s1
  N/A
  Male
  Control
  Unaffected sibling from the Simons Simplex Collection (SSC)
 
  17117645
  17358050
  240406
  GRCh38
  Deletion
  Yes
  krumm_15_ASD_discovery_controls-control13593.s1
  N/A
  Male
  Control
  Unaffected sibling from the Simons Simplex Collection (SSC)
 
  19591789
  19652090
  60302
  GRCh38
  Duplication
  Yes
  krumm_15_ASD_discovery_controls-control13602.s1
  N/A
  Male
  Control
  Unaffected sibling from the Simons Simplex Collection (SSC)
 
  21019623
  21058196
  38574
  GRCh38
  Deletion
  Yes
  leblond_19_ASD_discovery_controls-controlPN400249
  N/A
  M
  Control
  Non-autism control
 
  18783097
  18838756
  55660
  GRCh38
  Duplication
  No
  levy_11_ASD_discovery_controls-11143.s1
  NA
  F
  Control
  NA
  NA
  19697565
  19787453
  89889
  GRCh38
  Deletion
  No
  nguyen_13_DD/ID/MCA/ASD_discovery_controls-control21
  N/A
  N/A
  Control
  N/A
  N/A
  N/A
  N/A
  N/A
  GRCh37
  Deletion
  N/A
  nguyen_13_DD/ID/MCA/ASD_discovery_controls-control22
  N/A
  N/A
  Control
  N/A
  N/A
  N/A
  N/A
  N/A
  GRCh37
  Deletion
  N/A
  nguyen_13_DD/ID/MCA/ASD_discovery_controls-control23
  N/A
  N/A
  Control
  N/A
  N/A
  N/A
  N/A
  N/A
  GRCh37
  Deletion
  N/A
  nguyen_13_DD/ID/MCA/ASD_discovery_controls-control24
  N/A
  N/A
  Control
  N/A
  N/A
  N/A
  N/A
  N/A
  GRCh37
  Deletion
  N/A
  nguyen_13_DD/ID/MCA/ASD_discovery_controls-control25
  N/A
  N/A
  Control
  N/A
  N/A
  N/A
  N/A
  N/A
  GRCh37
  Deletion
  N/A
  nguyen_13_DD/ID/MCA/ASD_discovery_controls-control26
  N/A
  N/A
  Control
  N/A
  N/A
  N/A
  N/A
  N/A
  GRCh37
  Deletion
  N/A
  nguyen_13_DD/ID/MCA/ASD_discovery_controls-control27
  N/A
  N/A
  Control
  N/A
  N/A
  N/A
  N/A
  N/A
  GRCh37
  Deletion
  N/A
  nguyen_13_DD/ID/MCA/ASD_discovery_controls-control28
  N/A
  N/A
  Control
  N/A
  N/A
  N/A
  N/A
  N/A
  GRCh37
  Deletion
  N/A
  nguyen_13_DD/ID/MCA/ASD_discovery_controls-control29
  N/A
  N/A
  Control
  N/A
  N/A
  N/A
  N/A
  N/A
  GRCh37
  Deletion
  N/A
  nguyen_13_DD/ID/MCA/ASD_discovery_controls-control30
  N/A
  N/A
  Control
  N/A
  N/A
  N/A
  N/A
  N/A
  GRCh37
  Duplication
  N/A
  nguyen_13_DD/ID/MCA/ASD_discovery_controls-control31
  N/A
  N/A
  Control
  N/A
  N/A
  N/A
  N/A
  N/A
  GRCh37
  Duplication
  N/A
  nguyen_13_DD/ID/MCA/ASD_discovery_controls-control32
  N/A
  N/A
  Control
  N/A
  N/A
  N/A
  N/A
  N/A
  GRCh37
  Duplication
  N/A
  nguyen_13_DD/ID/MCA/ASD_discovery_controls-control33
  N/A
  N/A
  Control
  N/A
  N/A
  N/A
  N/A
  N/A
  GRCh37
  Duplication
  N/A
  nguyen_13_DD/ID/MCA/ASD_discovery_controls-control34
  N/A
  N/A
  Control
  N/A
  N/A
  N/A
  N/A
  N/A
  GRCh37
  Duplication
  N/A
  poultney_13_ASD_discovery_controls-control05C40631
  N/A
  F
  Control
  NIMH Control (NIMH ID 80004)
 
  20469510
  20555478
  85969
  GRCh38
  Deletion
  No
  sanders_11_ASD_discovery_controls-11350.s1
  6.1
  M
  Control (matched sibling)
  NA
  NA
  18130963
  18768514
  637552
  GRCh38
  Duplication
  No
  sanders_11_ASD_discovery_controls-11366.s1
  10.8
  M
  Control (matched sibling)
  NA
  NA
  18601126
  18739886
  138761
  GRCh38
  Duplication
  No
  sanders_11_ASD_discovery_controls-11962.s1
  7.8
  M
  Control (matched sibling)
  NA
  NA
  18233251
  18267519
  34269
  GRCh38
  Duplication
  No
  sanders_11_ASD_discovery_controls-12020.s1
  13.8
  M
  Control (matched sibling)
  NA
  NA
  16764451
  18233251
  1468801
  GRCh38
  Duplication
  No
  sanders_11_ASD_discovery_controls-12343.s1
  8
  F
  Control (matched sibling)
  NA
  NA
  18242234
  18260866
  18633
  GRCh38
  Duplication
  No
  sanders_11_ASD_discovery_controls-12351.s1
  15.3
  F
  Control (matched sibling)
  NA
  NA
  19014228
  19027388
  13161
  GRCh38
  Deletion
  No

Cases

Patient ID
Validation Description
Primary Disorder Inheritence
Inheritence
Family Profile
Disease Segregation
Gene Content
Altered Gene Expression
 allach_el_khattabi_18_ASD/DD/ID_discovery_cases-case33
 
 
 Unknown
 
 Unknown
 RPL7P47,XYLT1
 
 celestino-soper_11_ASD_discovery_cases-11418
 
 
 Unknown
 Simplex
 NA
 ARL6IP1
 
 chehbani_22_ASD_discovery_cases-case2
 
 
 Unknown
 Simplex
 
 SYT17,ITPRIPL2
 
 chung_11_ASD_discovery_cases-proband
 
 
 Paternal
 Simplex
 NA
 
 
 engchuan_15_ASD_discovery_cases-case5298_3
 
 
 Unknown
 
 
 MIR6511A4,MIR6770-3,MIR3180-3,MIR3670-3,MIR3179-3,MIR3670-4,MIR3179-4,NPIPA8,PKD1P5,ABCC6P1,NOMO2
 
 gai_11_ASD_discovery_cases-AU0938301
 
 
 Inherited
 
 
 0 genes
 
 gazzellone_14_ASD_discovery_cases-case514-3
 
 
 Unknown
 Unknown
 Unknown
 
 
 han_22_ASD/DD/ID_discovery_cases-case19D0779
 
 
 Unknown
 
 
 GPR139
 
 kaminsky_11_DD/ID/ASD_discovery_cases-ISCA00004323
 FISH, qPCR, MLPA, aCGH, or standard G-banded chromosome analysis
 
 Unknown
 Unknown
 Unknown
 RPS15A,RNU6-1340P,ARL6IP1,COQ7,ITPRIPL2,TMC7,SYT17,SMG1
 
 krumm_15_ASD_discovery_cases-case12009.p1
 Illumina 1MDuo
 
 Paternal
 Simplex
 Segregated
 UMOD,PDILT,GP2
 
 krumm_15_ASD_discovery_cases-case13307.p1
 1M-Duov3
 
 Maternal
 Simplex
 Not segregated (CNV in unaffected sibling)
 XYLT1
 
 krumm_15_ASD_discovery_cases-case13602.p1
 Omni2.5-4v1
 
 Paternal
 Simplex
 Not segregated (CNV in unaffected sibling)
 DNAH3
 
 lionel_13_ASD/SCZ/EP_discovery_cases-proband1
 
 
 Unknown
 Simplex
 Unknown
 
 
 lionel_13_ASD/SCZ/EP_discovery_cases-proband3
 
 
 Unknown
 Simplex
 Unknown
 MIR6511A4,MIR6770-3,MIR3180-3,MIR3670-3,MIR3179-3,MIR3670-4,MIR3179-4,NPIPA8,PKD1P5,ABCC6P1,NOMO2
 
 li_18_ASD_discovery_cases-case4701
 
 
 De novo
 Simplex
 Possibly segregated
 MIR6511A4,MIR6770-3,MIR3180-3,MIR3670-3,MIR3179-3,MIR3670-4,MIR3179-4,NPIPA8,PKD1P5,ABCC6P1,NOMO2
 
 nguyen_13_DD/ID/MCA/ASD_discovery_cases-patient179
 
 
 Unknown
 Unknown
 Unknown
 Minimum CNV gene content: SMG1
 
 nguyen_13_DD/ID/MCA/ASD_discovery_cases-patient180
 
 
 Unknown
 Unknown
 Unknown
 Minimum CNV gene content: SMG1
 
 nguyen_13_DD/ID/MCA/ASD_discovery_cases-patient181
 
 
 Unknown
 Unknown
 Unknown
 Minimum CNV gene content: SMG1
 
 nguyen_13_DD/ID/MCA/ASD_discovery_cases-patient182
 
 
 Unknown
 Unknown
 Unknown
 Minimum CNV gene content: SMG1
 
 nguyen_13_DD/ID/MCA/ASD_discovery_cases-patient183
 
 
 Unknown
 Unknown
 Unknown
 Minimum CNV gene content: SMG1
 
 nguyen_13_DD/ID/MCA/ASD_discovery_cases-patient184
 
 
 Unknown
 Unknown
 Unknown
 Minimum CNV gene content: SMG1
 
 pinto_10_ASD_discovery_cases-case5437_3
 qPCR, Agilent 1M
 
 De novo
 Multiplex (MZ twin with ASD)
 Not segregated
 XYLT1
 
 poultney_13_ASD_discovery_cases-case04HI3189A
 
 
 Unknown
 Unknown (likely multiplex/AGRE)
 Unknown
 ACSM2A
 
 poultney_13_ASD_discovery_cases-case04HI3189A
 
 
 Unknown
 Unknown (likely multiplex/AGRE)
 Unknown
 ACSM2B
 
 poultney_13_ASD_discovery_cases-case98HI0075B
 
 
 Unknown
 Unknown (likely multiplex/AGRE)
 Unknown
 LYRM1,DNAH3
 
 poultney_13_ASD_discovery_cases-case98HI0266B
 
 
 Unknown
 Unknown (likely multiplex/AGRE)
 Unknown
 ACSM2A,ACSM2B
 
 sajan_13_ACC/CBLH/PMG_discovery_cases-case1028-0
 qPCR
 
 De novo
 Unknown
 Unknown
 RNU6-1340P,ARL6IP1,TMC7,SMG1
 
 sajan_13_ACC/CBLH/PMG_discovery_cases-case1221-0
 Not tested by qPCR
 
 Unknown
 Unknown
 Unknown
 SYT17
 
 sanders_11_ASD_discovery_cases-11049.p1
 
 
 Unknown
 Simplex (quad-proband matched)
 Segregated
 MIR6511A4,MIR6770-3,MIR3180-3,MIR3670-3,MIR3179-3,MIR3670-4,MIR3179-4,NPIPA8,PKD1P5,ABCC6P1,NOMO2
 
 sanders_11_ASD_discovery_cases-11429.p1
 
 
 Maternal
 Simplex (quad-proband matched)
 Segregated
 
 
 sanders_11_ASD_discovery_cases-11590.p1
 
 
 Maternal
 Simplex (quad-proband matched)
 Not segregated
 
 
 sanders_11_ASD_discovery_cases-11641.p1
 
 
 Unknown
 Simplex (quad-proband matched)
 Not segregated
 MIR6511A4,MIR6770-3,MIR3180-3,MIR3670-3,MIR3179-3,MIR3670-4,MIR3179-4,NPIPA8,PKD1P5,ABCC6P1,NOMO2
 
 sanders_11_ASD_discovery_cases-11963.p1
 
 
 Unknown
 Simplex (quad-proband matched)
 Not segregated
 
 
 sanders_11_ASD_discovery_cases-12009.p1
 
 
 Paternal
 Simplex (trio)
 NA
 UMOD,PDILT,ACSM5
 
 sanders_11_ASD_discovery_cases-12175.p1
 
 
 Maternal
 Simplex (quad-proband matched)
 Not segregated
 
 
 sanders_11_ASD_discovery_cases-12184.p1
 
 
 Unknown
 Simplex (quad-proband matched)
 Not segregated
 
 
 sanders_11_ASD_discovery_cases-12321.p1
 
 
 Paternal
 Simplex (quad-proband matched)
 Not segregated
 
 
 sanders_11_ASD_discovery_cases-12351.p1
 
 
 Paternal
 Simplex (quad-proband matched)
 Not segregated
 TMC7
 
 sanders_11_ASD_discovery_cases-12652.p1
 
 
 Maternal
 Simplex (quad-proband matched)
 Not segregated
 ACSM2B
 
 sanders_11_ASD_discovery_cases-13085.p1
 
 
 Maternal
 Simplex (trio)
 NA
 
 
 soueid_16_ASD_discovery_cases-caseSAI33
 
 
 Paternal
 Simplex
 
 MIR6511A4,MIR6770-3,MIR3180-3,MIR3670-3,MIR3179-3,MIR3670-4,MIR3179-4,NPIPA8,PKD1P5,ABCC6P1,NOMO2
 
 soueid_16_ASD_discovery_cases-caseSAI33
 
 
 Paternal
 Simplex
 
 MIR3179-2,MIR3670-2,MIR3180-2,MIR6511A2,MIR6770-2,MIR6511A3,ABCC6,PKD1P1,NOMO3,NPIPA7
 
 vaags_11_ASD_replication_cases_2-probandF4-003
 
 
 Unknown
 Simplex
 Unknown
 MIR6511A4,MIR6770-3,MIR3180-3,MIR3670-3,MIR3179-3,MIR3670-4,MIR3179-4,NPIPA8,PKD1P5,ABCC6P1,NOMO2
 

Controls

Patient ID
Validation Description
Primary Disorder Inheritence
Inheritence
Family Profile
Disease Segregation
Gene Content
Altered Gene Expression
engchuan_15_ASD_discovery_controls-control110036020642_
 
 
  Unknown
 
 
 
 
engchuan_15_ASD_discovery_controls-controlB220230_1007853908
 
 
  Unknown
 
 
  XYLT1
 
engchuan_15_ASD_discovery_controls-controlB256025_1007875987
 
 
  Unknown
 
 
  MIR6511A4,MIR6770-3,MIR3180-3,MIR3670-3,MIR3179-3,MIR3670-4,MIR3179-4,NPIPA8,PKD1P5,ABCC6P1,NOMO2
 
engchuan_15_ASD_discovery_controls-controlB294025_1007842040
 
 
  Unknown
 
 
  ACSM5,ACSM2A,ACSM2B,ACSM5P1,ACSM1,ACSM3
 
engchuan_15_ASD_discovery_controls-controlB322144_1007854009
 
 
  Unknown
 
 
  TMC7
 
engchuan_15_ASD_discovery_controls-controlB525694_1007854064
 
 
  Unknown
 
 
  RNU6-1340P,COQ7,TMC7
 
engchuan_15_ASD_discovery_controls-controlHABC_901248_901248
 
 
  Unknown
 
 
  VPS35L
 
kanduri_15_ASD_discovery_controls-control_split1032
 
 
  Unknown
 
 
  ACSM2B
 
kanduri_15_ASD_discovery_controls-control_split1032
 
 
  Unknown
 
 
  ACSM2A
 
krumm_13_ASD_discovery_controls-control13593.s1
 
 
  Paternal
  Simplex
 
  VPS35L
 
krumm_15_ASD_discovery_controls-control13307.s1
  1M-Duov3
 
  Maternal
 
 
  XYLT1
 
krumm_15_ASD_discovery_controls-control13593.s1
  1M-Duov3
 
  Paternal
 
 
  VPS35L
 
krumm_15_ASD_discovery_controls-control13602.s1
  Omni2.5-4v1
 
  Paternal
 
 
  DNAH3
 
leblond_19_ASD_discovery_controls-controlPN400249
 
 
  Unknown
 
 
  RPS15A,ARL6IP1,SMG1
 
levy_11_ASD_discovery_controls-11143.s1
 
 
  Maternal
  Simplex
  NA
  KNOP1,VPS35L,IQCK
 
nguyen_13_DD/ID/MCA/ASD_discovery_controls-control21
 
 
  Unknown
  Unknown
 
  Minimum CNV gene content: SMG1
 
nguyen_13_DD/ID/MCA/ASD_discovery_controls-control22
 
 
  Unknown
  Unknown
 
  Minimum CNV gene content: SMG1
 
nguyen_13_DD/ID/MCA/ASD_discovery_controls-control23
 
 
  Unknown
  Unknown
 
  Minimum CNV gene content: SMG1
 
nguyen_13_DD/ID/MCA/ASD_discovery_controls-control24
 
 
  Unknown
  Unknown
 
  Minimum CNV gene content: SMG1
 
nguyen_13_DD/ID/MCA/ASD_discovery_controls-control25
 
 
  Unknown
  Unknown
 
  Minimum CNV gene content: SMG1
 
nguyen_13_DD/ID/MCA/ASD_discovery_controls-control26
 
 
  Unknown
  Unknown
 
  Minimum CNV gene content: SMG1
 
nguyen_13_DD/ID/MCA/ASD_discovery_controls-control27
 
 
  Unknown
  Unknown
 
  Minimum CNV gene content: SMG1
 
nguyen_13_DD/ID/MCA/ASD_discovery_controls-control28
 
 
  Unknown
  Unknown
 
  Minimum CNV gene content: SMG1
 
nguyen_13_DD/ID/MCA/ASD_discovery_controls-control29
 
 
  Unknown
  Unknown
 
  Minimum CNV gene content: SMG1
 
nguyen_13_DD/ID/MCA/ASD_discovery_controls-control30
 
 
  Unknown
  Unknown
 
  Minimum CNV gene content: SMG1
 
nguyen_13_DD/ID/MCA/ASD_discovery_controls-control31
 
 
  Unknown
  Unknown
 
  Minimum CNV gene content: SMG1
 
nguyen_13_DD/ID/MCA/ASD_discovery_controls-control32
 
 
  Unknown
  Unknown
 
  Minimum CNV gene content: SMG1
 
nguyen_13_DD/ID/MCA/ASD_discovery_controls-control33
 
 
  Unknown
  Unknown
 
  Minimum CNV gene content: SMG1
 
nguyen_13_DD/ID/MCA/ASD_discovery_controls-control34
 
 
  Unknown
  Unknown
 
  Minimum CNV gene content: SMG1
 
poultney_13_ASD_discovery_controls-control05C40631
 
 
  Unknown
 
 
  ACSM2A,ACSM2B
 
sanders_11_ASD_discovery_controls-11350.s1
 
 
  Unknown
  Simplex (quad)
  NA
  MIR6511A4,MIR6770-3,MIR3180-3,MIR3670-3,MIR3179-3,MIR3670-4,MIR3179-4,NPIPA8,PKD1P5,ABCC6P1,NOMO2
 
sanders_11_ASD_discovery_controls-11366.s1
 
 
  Paternal
  Simplex (quad)
  NA
 
 
sanders_11_ASD_discovery_controls-11962.s1
 
 
  Unknown
  Simplex (quad)
  NA
 
 
sanders_11_ASD_discovery_controls-12020.s1
 
 
  Maternal
  Simplex (quad)
  NA
  RPL7P47,XYLT1
 
sanders_11_ASD_discovery_controls-12343.s1
 
 
  Both parents
  Simplex (quad)
  NA
 
 
sanders_11_ASD_discovery_controls-12351.s1
 
 
  Paternal
  Simplex (quad)
  NA
  TMC7
 

No Animal Model Data Available
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