15q25.2-q26.3CNV Type: Duplication
Largest CNV size: 17633746 bp
Statistics Box:
Number of Reports: 2
Number of Reports: 2
Summary Information
Rare singleton duplication within this region was found in a case from a study of 15,749 individuals from the International Standards for Cytogenomic Arrays (ISCA) consortium with unexplained developmental delay, intellectual disability, dysmorphic features, multiple congenital anomalies, autism spectrum disorders, or clinical features suggestive of a chromosomal syndrome (Kaminsky et al., 2011).
Additional Locus Information
References
Major Reports
Title
Author, Year
Report Class
CNV Type
An evidence-based approach to establish the functional and clinical significance of copy number variants in intellectual and developmental disabili...
Duplication
Minor Reports
Title
Author, Year
Report Class
CNV Type
No Minor Reports
Cases
Cohort ID
Author, Year
Descripton
Cohort Size
Diagnosis
Age
Gender
CNV Size
Deletion
Duplication
Total CNV's
kaminsky_11_DD/ID/ASD_discovery_cases
Cases from the International Standards for Cytogenomic Arrays (ISCA) consortium
15749
Unexplained developmental delay, intellectual disability, dysmorphic features, multiple congenital anomalies, autism spectrum disorders, or clinical features suggestive of a chromosomal syndrome
NA
NA
17633746
0
1
1
streata_22_ASD/DD/ID_discovery_cases
Patients evaluated for global developmental delay and/or intellectual disability in pediatric, child neurology, or medical genetics departments throughout Romania who were referred to the Regional Centre for Medical Genetics for genetic testing between 2015 and 2022.
371
All cases presented with global developmental delay (DD) and/or intellectual disability (ID); a subset of cases also presented with autism spectrum disorder (ASD).
Range, 6 mos.-40 yrs. (median age, 5.5 yrs.)
63.07% Male
18427760
0
1
1
Controls
Cohort ID
Author, Year
Descripton
Cohort Size
Diagnosis
Age
Gender
CNV Size
Deletion
Duplication
Total CNV's
kaminsky_11_DD/ID/ASD_discovery_controls
Controls from the International Standards for Cytogenomic Arrays (ISCA) consortium
10118
Controls
NA
NA
NA
NA
NA
NA
Cases
Cohort ID
Geographical Ancestry
Discovery Method
Platform
Algorithm
Software
Validation Method
kaminsky_11_DD/ID/ASD_discovery_cases
NA
aCGH
Agilent 44K, Agilent 105K
Feature Extraction, DNA Analytics
FISH, qPCR, MLPA, aCGH, standard G-banded chromosome analysis
streata_22_ASD/DD/ID_discovery_cases
Romania
aCGH
Agilent SurePrint G3 ISCA v.2 8x60K, Agilent 4x180K, OGT CytoSure ISCA v.2 8x60K
NA
Agilent CytoGenomics, OGT CytoSure Interpret
CMA, karyotyping, and/or MLPA
Controls
Cohort ID
Geographical Ancestry
Discovery Method
Platform
Algorithm
Software
Validation Method
kaminsky_11_DD/ID/ASD_discovery_controls
NA
aCGH
Agilent 44K, Agilent 105K
Feature Extraction, DNA Analytics
Cases
Patient ID
Author, Year
Age
Gender
Primary Diagnosis
Clinical Profile
Cognitive Profile
CNV Start
CNV End
CNV Size
Genome Build
Type Method
Validation
kaminsky_11_DD/ID/ASD_discovery_cases-ISCA00002419
NA
NA
Developmental delay/intellectual disability/ASD
Clinical profile NA
Cognitive profile NA
84169153
101904929
17735777
GRCh38
Duplication
Yes
streata_22_ASD/DD/ID_discovery_cases-case234
NA
F
Developmental delay and intellectual disability
Global developmental delay, speech and/or language delay or impairment, congenital anomalies, facial dysmorphism.
Mild/moderate intellectual disability
83415517
101843276
18427760
GRCh38
Duplication
Yes
Controls
No Control Data Available
Cases
Patient ID
Validation Description
Primary Disorder Inheritence
Inheritence
Family Profile
Disease Segregation
Gene Content
Altered Gene Expression
kaminsky_11_DD/ID/ASD_discovery_cases-ISCA00002419
FISH, qPCR, MLPA, aCGH, or standard G-banded chromosome analysis
Unknown
Unknown
Unknown
DNM1P41,RN7SL331P,GOLGA6L4,UBE2Q2P8,RN7SL417P,CSPG4P5,UBE2Q2P11,EGLN1P1,RNU6-339P,RNU6-796P,NIFKP8,RN7SL428P,MIR7706,RNU7-79P,RNU6-1280P,MIR1276,RNU6-231P,MIR548AP,RNA5SP400,RNU6-185P,LINC00052,MED28P6,MRPL46,MIR1179,MIR7-2,MIR3529,AEN,KRT18P47,RNU7-195P,HMGB1P8,MIR6766,MIR9-3,RPL36AP43,RNU6-132P,MESP1,MRPL15P1,MIR5094,MIR5009,RNU6-1111P,RNU7-111P,MIR3174,RN7SL346P,RPS12P26,CIB1,RN7SL736P,GABARAPL3,NDUFA3P4,HSPE1P3,LINC01585,RN7SL363P,FES,RCCD1,DUXAP6,NPM1P5,HMGN1P38,ASB9P1,MIR3175,RNU2-3P,LINC02157,MIR1469,PGAM1P12,RN7SKP254,FAM149B1P1,SPATA8,RN7SKP181,RNA5SP401,ARRDC4,RNU6-1186P,LINC02351,IRAIN,MIR4714,LUNAR1,HSP90B2P,HNRNPA1P62,LINC02244,RPL7P5,RN7SL484P,RNA5SP402,SPATA41,RNU6-322P,PRKXP1,RNU6-181P,SELENOS,SNRPCP18,LINC02348,RNU6-807P,RN7SL209P,OR4F6,OR4F15,OR4F14P,OR4F28P,WBP1LP5,UBE2Q2L,CSPG4P11,GOLGA2P7,UBE2Q2P12,GOLGA6L5P,LINC00933,ZSCAN2,SCAND2P,WDR73,NMB,ALPK3,GOLGA6L3,KLHL25,AGBL1-AS1,NTRK3-AS1,DET1,ISG20,HAPLN3,MFGE8,RLBP1,POLG,RHCG,TICRR,PLIN1,PEX11A,WDR93,MESP2,ANPEP,AP3S2,ARPIN,ZNF710-AS1,IDH2,IDH2-DT,GDPGP1,TTLL13P,NGRN,GOLGA2P8,ZNF774,BLM,FURIN,MAN2A2,HDDC3,UNC45A,PRC1,PRC1-AS1,VPS33B,VPS33B-DT,ENO1P2,C15orf32,LINC00930,H2AFVP1,LINC01578,LINC02207,SPATA8-AS1,RN7SL677P,LINC01582,FAM169B,PGPEP1L,SYNM,LYSMD4,DNM1P46,LINS1,ASB7,ALDH1A3,SNRPA1,PCSK6-AS1,TM2D3,DNM1P47,GOLGA8VP,DNM1P51,UBE2Q2P1,SEC11A,ZNF592,PDE8A,CSPG4P12,ADAMTS7P4,AKAP13,LINC01584,AGBL1,MRPS11,LINC01586,ACAN,FANCI,MIR9-3HG,LINC00928,KIF7,ZNF710,IQGAP1,CRTC3,CRTC3-AS1,CRAT37,SLCO3A1,ST8SIA2,FAM174B,CHD2,RGMA,LINC01579,LINC01580,LINC01581,LINC01197,NR2F2-AS1,NR2F2,LINC02253,LINC00923,LINC02251,IGF1R,TTC23,LRRC28,ADAMTS17,CERS3-AS1,CERS3,LRRK1,CHSY1,PCSK6,OR4F13P,SLC28A1,NTRK3,ABHD2,SEMA4B,SV2B,MCTP2,LINC00924,LINC02254,MEF2A,TARSL2
streata_22_ASD/DD/ID_discovery_cases-case234
CMA, karyotyping, and/or MLPA
De novo
BLM,ANPEP,ALDH1A3,ACAN,CHD2,FES,RNU2-3P,MRPL46,SLCO3A1,VPS33B,NGRN,RHCG,SCAND2P,ZSCAN2,LINS1,FANCI,DET1,MCTP2,ADAMTSL3,WDR93,ALPK3,UNC45A,RGMA,SELENOS,MESP1,LRRK1,CRTC3,KLHL25,AEN,TTC23,MRPS11,TM2D3,ARRDC4,WDR73,LINC00923,RCCD1,TICRR,AGBL1,CSPG4P5,LRRC28,TARS3,HAPLN3,LINC00052,PGPEP1L,LYSMD4,ASB7,SPATA8,C15orf32,LINC00924,MESP2,CERS3,DNM1P46,ADAMTS17,IDH2,IGF1R,ISG20,LINC01579,FAM169B,LINC00928,NTRK3-AS1,MIR9-3HG,ZNF774,ARPIN,UBE2Q2P1,MRPL15P1,GOLGA6L5P,HDDC3,GOLGA2P7,SPATA41,ZNF710,FAM149B1P1,KIF7,OR4F6,OR4F15,LETR1,OR4F13P,GDPGP1,KRT18P47,FAM174B,OR4F14P,PGAM1P12,GOLGA8VP,PRKXP1,MIR7-2,DNM1P41,MIR9-3,FABP5P9,ADAMTS7P4,NIFKP8,DUXAP6,GOLGA6L4,HMGN1P38,NR2F2-AS1,EFL1P1,H2AZ2P1,ASB9P1,AGBL1-AS1,RPL7P5,HMGB1P8,GOLGA2P8,CSPG4P12,YBX2P2,RPS12P26,MAN2A2,NMB,MEF2A,FURIN,MFGE8,NTRK3,NPM1P5,PCSK6,LINC00930,RNU7-79P,GOLGA6L3,DNM1P47,RPL36AP43,SNRPCP18,TUBAP12,MIR1179,MIR1276,ENO1P2,MIR1469,SEPHS1P2,THRAP3P2,UBE2Q2P11,UBE2Q2P8,UBE2Q2P12,UBE2Q2L,MIR3175,MIR3174,CHASERR,LINC00933,HSPE1P3,MIR3529,ARPIN-AP3S2,PRC1-AS1,SPATA8-AS1,RNA5SP400,MIR5094,MIR548AP,RNA5SP402,MIR5009,CSPG4P11,MIR4714,RNA5SP401,CRTC3-AS1,LINC02207,VPS33B-DT,LINC01581,LINC01580,LINC02254,ALDH1A3-AS1,LINC02348,LINC01582,RLBP1,PDE8A,PLIN1,POLG,LINC01585,LINC02883,LINC01586,LINC01584,MIR7706,MIR6766,CERS3-AS1,LUNAR1,IRAIN,GCAWKR,CARMAL,LINC02244,IDH2-DT,LINC02251,PCSK6-AS1,LINC02852,LINC02351,SYNM-AS1,RN7SL484P,RN7SL428P,RN7SL346P,RN7SKP181,RN7SL331P,TUBAP4,RNU7-195P,SNRPA1,SH3GL3,NR2F2,HSP90B2P,RN7SL677P,RNU6-1186P,RNU6-401P,RNU6-807P,HNRNPA1P62,RNU6-231P,RN7SL209P,MED28P6,RN7SL363P,RNU6-132P,NDUFA3P4,RNU6-181P,RNU6-185P,RNU6-796P,RNU6-1339P,RNU6-1280P,EGLN1P1,RNU6-339P,RN7SKP254,RNU7-111P,RNU6-1111P,RN7SL417P,RN7SL736P,RNU6-322P,LINC02253,DNM1P51,ZNF710-AS1,LINC02157,ST8SIA2,IQGAP1,PEX11A,H3P40,RCCD1-AS1,SNRPA1-DT,POLG-DT,SV2B,SLC28A1,ZNF592,PRC1,CHSY1,CIB1,ABHD2,AKAP13,SEMA4B,AP3S2,SEC11A,SYNM,GABARAPL3
Controls
No Control Data Available
No Animal Model Data Available