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12q24.22CNV Type: Duplication


Largest CNV size: 51000 bp

Statistics Box:
Number of Reports: 6



Summary Information

Summary statement in development

Additional Locus Information

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USCS Symbol             NCBI Symbol

Decipher

            Decipher Symbol

References

Major Reports

Title
Author, Year
Report Class
CNV Type
Frequency and Complexity of De Novo Structural Mutation in Autism.
Deletion
Paternally inherited cis-regulatory structural variants are associated with autism.
Deletion

Minor Reports

Title
Author, Year
Report Class
CNV Type
Prospective diagnostic analysis of copy number variants using SNP microarrays in individuals with autism spectrum disorders.
Duplication
Identification of small exonic CNV from whole-exome sequence data and application to autism spectrum disorder.
Deletion-Duplication
Identification of risk genes for autism spectrum disorder through copy number variation analysis in Austrian families.
Duplication
Diagnostic yield of patients with undiagnosed intellectual disability
Duplication

Cases

Cohort ID
Author, Year
Descripton
Cohort Size
Diagnosis
Age
Gender
CNV Size
Deletion
Duplication
Total CNV's
 brandler_16_ASD_discovery_cases
 ASD probands primarily referred from clinical departments at Rady's Childrens Hospital (including the Autism Discovery Institute, the Departments of Psychiatry, Neurology, and Speech and Occupational Therapy, and the Developmental Evaluation Clinic); further referrals through project website or the Autism Center of Excellence at the University of California, San Diego (11 trios)
 71
 Cases had an existing diagnosis of ASD and received a diagnosis of ASD on the basis of an evaluation by a licensed clinician.
 N/A
 N/A
 18338
 1
 0
 1
 brandler_18_ASD_discovery_cases
 Affected individuals from the Relating Genes with Adolescent and Child Health (REACH) cohort (362 cases from 311 families; 54 multiplex, 243 simplex) and the Simons Simplex 1 (SSC1) cohort (518 cases from simplex quad families)
 880
 REACH cohort: 285 cases diagnosed with ASD, 43 cases diagnosed with PDD-NOS, 10 cases diagnosed with ADHD, and 24 cases presenting with speech delay, epilepsy, anxiety, or other related developmental disorders that were classified as cases for bioinformatics analyses; Simons Simplex Collection 1 (SSC1) cohort: all 518 cases were diagnosed with ASD
 N/A
 N/A
 18550
 1
 0
 1
 egger_14_ASD_discovery_cases
 ASD probands from Austria (71 simplex, 2 multiplex) recruited from the catchment area of Styria using three recruitment sites (Institute of Human Genetics, Medical University of Graz, Club Libelle, Center for Autism, Styria, and Children's Hospital, University Hospital Graz).
 73
 Diagnosis of ASD made using ADOS and ADI-R according to DSM-IV or DSM-V categories
 N/A
 80.82% Male
 141658
 0
 1
 1
 leite_22_DD/ID_discovery_cases
 Individuals from a retrospective cross-sectional study, from 2013 to 2017, which included a representative subset of a population composed by patients who were physically examined and clinically diagnosed with intellectual disability, global developmental delay, and/or multiple congenital anomalies by assistant physicians from the state public health service of Gois.
 369
 Cases presented with global developmental delay/intellectual disability (DD/ID) with or without multiple congenital anomalies.
 93.2% of cases under 18 yrs.
 47.4% Male
 105455
 0
 1
 1
 nava_13_ASD_discovery_cases
 Subjects recruited in the Centre de Reference deficiences intellectuelles de causes rares', the 'Centre Diagnostic Autisme', Pitie-Salpetriere Hospital (Paris, France) or the Fondation Lejeune over a period of 3 years (20092011).
 194
 Cases assessed with ADI-R
 N/A
 83.5% Male
 51000
 0
 1
 1
 poultney_13_ASD_discovery_cases
 ASD cases of European ancestry from AGRE retained after filtering (original cohort size of 432 cases)
 299
 Cases diagnosed with ASD
 N/A
 79.86% Male (before filtering)
 273523
 1
 2
 3

Controls

Cohort ID
Author, Year
Descripton
Cohort Size
Diagnosis
Age
Gender
CNV Size
Deletion
Duplication
Total CNV's
 egger_14_ASD_discovery_controls
 CNV data from POPGEN (n=1,123) and the Ottawa Heart Institute (n=1,234)
 2357
 Control
 N/A
 N/A
 0
 0
 0
 0
 poultney_13_ASD_discovery_controls
 Controls matched for European ancestry from NIMH and CEPH retained after filtering (original cohort size of 379 controls)
 260
 Control
 N/A
 47.49% Male (before filtering)
 207173
 0
 2
 2
 sanders_11_ASD_discovery_controls
 Matched siblings of autistic probands from the Simons Simplex Collection (SSC).
 872
 Controls
 Mean, 10.0 yrs.
 
 21291
 0
 1
 1

Cases

Cohort ID
Geographical Ancestry
Discovery Method
Platform
Algorithm
Software
Validation Method
 brandler_16_ASD_discovery_cases
  N/A
 WGS
  Illumina HiSeq
 ForestSV
 gtCNV
 Solid phase hybridization (Illumina 2.5M)
 brandler_18_ASD_discovery_cases
  N/A
 WGS
  Illumina HiSeq X10 or HiSeq 2500
 ForestSV, Lumpy, Manta, Mobster, SV2
 
 PCR, array SNP
 egger_14_ASD_discovery_cases
  68 European, 2 Asian, 1 African, 1 Turkish, 1 Egyptian
 Array SNP
  Affymetrix 6.0
 Birdsuite, iPattern, Affymetrix Genotyping Console
 
 None
 leite_22_DD/ID_discovery_cases
  Brazil
 CMA
  Thermofisher GeneChip CytoScanHD
 NA
 ThermoFisher ChAS v.3.0
 None
 nava_13_ASD_discovery_cases
  France
 Solid phase hybridization
  Illumina cytoSNP-12, Illumina 660W-Quad, Illumina 370CNV-Quad
 
 GenomeStudio v.2011.1, CNVPartition v.3.1.6
 None
 poultney_13_ASD_discovery_cases
  European
 WES
  Agilent SureSelect Human All Exon v.2
 XHMM
 
 None

Controls

Cohort ID
Geographical Ancestry
Discovery Method
Platform
Algorithm
Software
Validation Method
  egger_14_ASD_discovery_controls
  European
  N/A
  N/A
 
 
 
  poultney_13_ASD_discovery_controls
  European
  WES
  Agilent SureSelect Human All Exon v.2
  XHMM
 
  None
  sanders_11_ASD_discovery_controls
 
  Solid phase hybridization
  Illumina 1M v1 or Illumina 1M v3
  PennCNV, QuantiSNP, GNOSIS
 
 

Cases

Patient ID
Author, Year
Age
Gender
Primary Diagnosis
Clinical Profile
Cognitive Profile
CNV Start
CNV End
CNV Size
Genome Build
Type Method
Validation
  brandler_16_ASD_discovery_cases_caseREACH000163
 N/A
 M
 ASD
 Case had an existing diagnosis of ASD and received a diagnosis of ASD on the basis of an evaluation by a licensed clinician
 
 117081826
 117100163
  18338
 GRCh38
 Deletion
 Yes
  brandler_18_ASD_discovery_cases-caseREACH000163
 N/A
 M
 ASD
 Case from REACH cohort
 
 117081746
 117100295
  18550
 GRCh38
 Deletion
 Yes
  egger_14_ASD_discovery_cases-caseA136
 10 yrs. (born 2004)
 F
 ASD
 Diagnosis: Asperger syndrome. Co-morbidities/additional features: ADHD. Family history: none reported. CNV: high stringency genic CNV call (2 or more algorithms), with no overlapping calls in 2,357 POPGEN and OHI controls, and <50% overlap in DGV.
 Normal IQ
 116733184
 116874841
  141658
 GRCh38
 Duplication
 No
  leite_22_DD/ID_discovery_cases-case071
 2 yrs.
 F
 Developmental delay
 Global developmental delay, multiple stigmas
 
 117210413
 117315867
  105455
 GRCh38
 Duplication
 No
  nava_13_ASD_discovery_cases-Fam933Proband10746
 N/A
 M
 ASD
 Additional clinical profile info N/A
 ID
 116696359
 116747842
  51484
 GRCh38
 Duplication
 No
  poultney_13_ASD_discovery_cases-case05HI3744A
 N/A
 M
 ASD
 ASD case from AGRE (AGRE ID AU1228304; NDAR ID NDAR_INVZU052GUK)
 
 116719761
 116723225
  3465
 GRCh38
 Deletion
 No
  poultney_13_ASD_discovery_cases-case99HI0694B
 N/A
 F
 ASD
 ASD case from AGRE (AGRE ID AU038203; NDAR ID NDAR_INVXX733FLA)
 
 117157871
 117288221
  130351
 GRCh38
 Duplication
 No
  poultney_13_ASD_discovery_cases-case99HI0694B
 N/A
 F
 ASD
 ASD case from AGRE (AGRE ID AU038203; NDAR ID NDAR_INVXX733FLA)
 
 116753984
 117027506
  273523
 GRCh38
 Duplication
 No

Controls

Patient ID
Author, Year
Age
Gender
Primary Diagnosis
Clinical Profile
Cognitive Profile
CNV Start
CNV End
CNV Size
Genome Build
Type Method
Validation
  poultney_13_ASD_discovery_controls-control05C44621
  N/A
  M
  Control
  NIMH Control (NIMH ID 39000)
 
  117056804
  117263976
  207173
  GRCh38
  Duplication
  No
  poultney_13_ASD_discovery_controls-control05C44954
  N/A
  F
  Control
  NIMH Control (NIMH ID 12344)
 
  116534625
  116741094
  206470
  GRCh38
  Duplication
  No
  sanders_11_ASD_discovery_controls-11561.s1
  8.9
  M
  Control (matched sibling)
  NA
  NA
  116446008
  116467299
  21292
  GRCh38
  Duplication
  No

Cases

Patient ID
Validation Description
Primary Disorder Inheritence
Inheritence
Family Profile
Disease Segregation
Gene Content
Altered Gene Expression
 brandler_16_ASD_discovery_cases_caseREACH000163
 Solid phase hybridization (Illumina 2.5M)
 
 De novo
 Unknown
 Possibly segregated
 TESC-AS1,TESC
 
 brandler_18_ASD_discovery_cases-caseREACH000163
 SNP VCF
 
 De novo
 
 
 TESC-AS1,TESC
 
 egger_14_ASD_discovery_cases-caseA136
 
 
 Unknown
 
 Unknown
 RNU6-558P,C12orf49,HRK,RNFT2
 
 leite_22_DD/ID_discovery_cases-case071
 
 
 De novo
 
 
 NOS1,ELOCP32
 
 nava_13_ASD_discovery_cases-Fam933Proband10746
 
 
 Paternal
 Simplex
 Unknown
 C12orf49,RNFT2
 
 poultney_13_ASD_discovery_cases-case05HI3744A
 
 
 Unknown
 Unknown (likely multiplex/AGRE)
 Unknown
 C12orf49
 
 poultney_13_ASD_discovery_cases-case99HI0694B
 
 
 Unknown
 Unknown (likely multiplex/AGRE)
 Unknown
 ELOCP32,FBXO21,NOS1
 
 poultney_13_ASD_discovery_cases-case99HI0694B
 
 
 Unknown
 Unknown (likely multiplex/AGRE)
 Unknown
 RNU6-558P,HRK,RNFT2,FBXW8
 

Controls

Patient ID
Validation Description
Primary Disorder Inheritence
Inheritence
Family Profile
Disease Segregation
Gene Content
Altered Gene Expression
poultney_13_ASD_discovery_controls-control05C44621
 
 
  Unknown
 
 
  ELOCP32,TESC-AS1,TESC,FBXO21,NOS1
 
poultney_13_ASD_discovery_controls-control05C44954
 
 
  Unknown
 
 
  LINC00173,MAP1LC3B2,C12orf49,RNFT2
 
sanders_11_ASD_discovery_controls-11561.s1
 
 
  Maternal
  Simplex (quad)
  NA
 
 

No Animal Model Data Available
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