11q13.2-q13.4CNV Type: Deletion
Largest CNV size: 3400000 bp
Statistics Box:
Number of Reports: 3
Number of Reports: 3
Summary Information
Summary statement in development
Additional Locus Information
References
Major Reports
Title
Author, Year
Report Class
CNV Type
Olfactory Receptor-Related Duplicons Mediate a Microdeletion at 11q13.2q13.4 Associated with a Syndromic Phenotype.
Deletion
De novo 11q deletion including SHANK2 in a patient with global developmental delay.
Deletion
Minor Reports
Title
Author, Year
Report Class
CNV Type
No Minor Reports
Cases
Cohort ID
Author, Year
Descripton
Cohort Size
Diagnosis
Age
Gender
CNV Size
Deletion
Duplication
Total CNV's
bui_24_ASD_discovery_cases
Vietnamese ASD probands from trio families who were diagnosed at Vinmec International Hospital from January 1st, 2017 to 31st December 31st, 2018 who were screened from de novo copy number variants.
100
Cases were diagnosed with autism spectrum disorder by Diagnostic and Statistical Manual of Mental Disorders (DSM) version 4 or 5, Autism Diagnostic Observation Schedule (ADOS) and Childhood Autism Rating Scale (CARS).
Range, 3-18 yrs. (average, 6.91 yrs.)
83.00% Male
5262673
1
0
1
marcou_17_DD/ID_discovery_cases
Third child born to parents with unremarkable family history presenting with a de novo 11q13.2-q13.4 deletion that included the SHANK2 gene
1
Case presented with global developmental delay, intellectual disability, microcephaly, and dysmorphic features
12 yrs.
Female
3500000
1
0
1
wischmeijer_10_MR_discovery_cases
Proband born to healthy, unrelated parents with no family history of congenital abnormalities or mental retardation
1
Mental retardation (MR), severe language delay, dysmorphic features
8.5 yrs.
Female
3400000
1
0
1
Controls
No Control Data Available
Cases
Cohort ID
Geographical Ancestry
Discovery Method
Platform
Algorithm
Software
Validation Method
bui_24_ASD_discovery_cases
Vietnam
aCGH
Agilent SurePrint G3
ADM-2
Agilent Feature Extraction Software v.11.5.1.1
qPCR
marcou_17_DD/ID_discovery_cases
N/A
Array SNP
Affymetrix Cytoscan HD
FISH
wischmeijer_10_MR_discovery_cases
Italian
aCGH
Agilent 44B
Microsatellite analysis, FISH
Controls
No Control Data Available
Cases
Patient ID
Author, Year
Age
Gender
Primary Diagnosis
Clinical Profile
Cognitive Profile
CNV Start
CNV End
CNV Size
Genome Build
Type Method
Validation
bui_24_ASD_discovery_cases-caseASD025
6 yrs.
F
ASD
Birth/neonatal infection: mother suffered from Rubella infection one month before pregnancy, born at 38 weeks gestation with a birth weight of 2800 g without any complications. Developmental milestones: developmental delay, delayed ability to walk (2 years), speech delay (babbling at 3 years). Language and communication evaluation: lack of speech and non-verbal communication. Motor and musculoskeletal evaluation: reduced gross and fine motor skills, flat feet. Behavioral/psychiatric evaluation: diagnosed with autism (ICD-10 F84.0, DSM5 level 3, ADOS 17/12, CARS 45.5), repetitive behavior. Family history: normal family history.
Diagnosed with intellectual disability (ICD-10 F70)
68088669
73351341
5262673
GRCh38
Deletion
Yes
marcou_17_DD/ID_discovery_cases-case1
12 yrs.
F
Global developmental delay/intellectual disability
Birth/neonatal history: born to a 36-year-old, gravida three, para three mother via natural conception; pregnancy not complicated by maternal illness or exposure to known teratogens, although the mother did take birth control pills during the first trimester and an antidepressant medication throughout gestation; birth at 36-1/2 weeks gestation via spontaneous vaginal delivery; birth weight of 2814 g (5th %ile), length of 45.08 cm (5th %ile), and head circumference of 32 cm (25th %ile); postnatal complications included need for oxygen and resuscitation for first 5 minutes of life; no additional postnatal complications observed prior to release from hospital; normal newborn screening; weak cry and weak suck as an infant, resulting in feeding difficulties and failure to thrive (weight <5th %ile); microcephaly (head circumference fell from 25th %ile to <5th %ile), hypotonia, and global developmental delay noted at this time. Developmental milestones: global developmental delay; rolling from front to back at 7 months, unassisted sitting between 9-11 months, crawling at 1 year, began pulling to stand at 14 months, independent walking at 22 months, climbing stairs between 4-5 years; did not use words until 3-4 years, did not speak in complete sentences until 8 years; no developmental regression. Lanaguge and communication evaluation: severe language delay, receives speech therapy twice a week. Motor and musculoskeletal evaluation: hypotonia; hypermobility in the small joints of the hand, mild pectus excavatum, evidence of scoliosis, arachnodactyly, long and thin feet, long and slender figners, clinodactyly of both fifth fingers, mild pes planus, piezogenic apules. EEG: normal. Brain imaging: normal brain MRI. Dysmorphic features: microcephaly, mild dolichocephaly, mild malar hypoplasia, mild retrognathia, fine hair, posterior hair whorl, prominent forehead, bilateral epicanthal folds, long palpebral fissures, deep-set eyes, low-set ears, petite ears, long ears with over-folding of the superior helix and with no tags or pits, broad nasal tip, depressed nasal bridge, small mouth, slight downturned corners of the mouth, widely spaced teeth. Growth parameters: height of 148.3 cm (19th %ile), weight of 36.1 kg (15th %ile), and head circumference of 50 cm (<3rd %ile) at 12 years. Family history: third child of parents; family history on both the maternal and paternal side is unremarkable with no documentation of any congenital anomalies or developmental delay; 48-year-old mother, 51-year-old father, and 23-year-old sister are healthy, 28-year-old brother was treated for testicular cancer at 21 years of age and a recurrence at 26 years of age.
Moderate-severe intellectual disability; case currently in 6th grade but performs work at 1st grade level.
68031693
71593495
3561803
GRCh38
Deletion
Yes
wischmeijer_10_MR_discovery_cases-proband
8.5 yrs.
F
Mental retardation (MR)
Severe language delay, multiple dysmorphic features (prominent forehead; eyes: ptosis, strabismus, astigmatism; ears: low set, posteriorly rotated, small simple ears with overfolded helices, preauricular tag; nose: round overhanging tip & hypoplastic alae nasi, broad nasal bridge; mouth: small, thin upper lip; teeth: small & central incisors widely spaced; long slender fingers; feet: metatarsus adductus, partial cutaneous syndactyly of toes II-III)
Moderate-to-severe MR
68001284
71575789
3574506
GRCh38
Deletion
Yes
Controls
No Control Data Available
Cases
Patient ID
Validation Description
Primary Disorder Inheritence
Inheritence
Family Profile
Disease Segregation
Gene Content
Altered Gene Expression
bui_24_ASD_discovery_cases-caseASD025
qPCR
De novo
CHKA,CCND1,PHOX2A,ART2P,FGF3,DHCR7,FOLR1,CPT1A,CTTN,FOLR3,FGF4,FOLR2,MYEOV,GAL,KMT5B,LAMTOR1,C11orf24,FAM86C1P,PPP6R3,RNF121,NADSYN1,ANO1,KRTAP5-8,CLPB,OR8R1P,OR7E128P,OR7E126P,ATG16L2,MRGPRD,ARAP1,MRGPRF,MRPL21,SHANK2-AS3,LTO1,TPCN2,LRTOMT,IGHMBP2,INPPL1,UNC93B6,DEFB108B,ALG1L9P,KRTAP5-14P,KRTAP5-10,ACTE1P,FOLR1P1,IFITM9P,MIR139,KRTAP5-7,KRTAP5-11,LINC02584,DEFB131B,DNAJB6P5,KRTAP5-9,LRP5,NUMA1,P2RY6,P2RY2,RPS3AP41,RPS12P20,ARHGEF17-AS1,SNRPCP14,MIR548K,RPEP6,ENPP7P8,MIR3664,MIR3165,MIR3164,H2AZP4,ARAP1-AS2,MIR4692,SHANK2-AS2,SHANK2-AS1,RNU6-72P,ARAP1-AS1,ANO1-AS1,PDE2A,LINC01537,LINC01488,MRGPRF-AS1,LINC02753,MIR6754,PDE2A-AS1,PDE2A-AS2,LINC02701,CHKA-DT,LINC02747,NDUFA3P2,RNA5SP342,RNU7-105P,RNU6-1175P,RNU6-672P,ART2BP,SMIM38,DEFB130C,PPFIA1,FADD,OR7E4P,OR7E87P,LRRC51,TOMT,CTTN-DT,IL18BP,ARHGEF17,FGF19,FCHSD2,TESMIN,STARD10,ANAPC15,SHANK2
marcou_17_DD/ID_discovery_cases-case1
FISH
De novo
Simplex
Segregated
NDUFS8,MIR7113,MIR4691,MIR6753,C11orf24,NDUFA3P2,GAL,MRGPRD,MRGPRF-AS1,MIR3164,IFITM9P,FGF19,FGF4,RNU6-1175P,ANO1-AS1,H2AFZP4,MIR548K,SHANK2-AS2,SHANK2-AS3,MIR3664,MIR6754,KRTAP5-7,KRTAP5-8,KRTAP5-10,KRTAP5-14P,OR7E87P,TCIRG1,CHKA,TESMIN,MRPL21,IGHMBP2,MRGPRF,LINC01488,CCND1,LTO1,FGF3,LINC02584,FADD,PPFIA1,CTTN,SHANK2-AS1,FLJ42102,NADSYN1,KRTAP5-9,KRTAP5-11,LRP5,PPP6R3,CPT1A,TPCN2,MYEOV,ANO1,SHANK2,DHCR7,KMT5B
wischmeijer_10_MR_discovery_cases-proband
Microsatellite analysis, FISH
De novo
NA
NA
NDUFS8,MIR7113,MIR4691,MIR6753,C11orf24,NDUFA3P2,GAL,MRGPRD,MRGPRF-AS1,MIR3164,IFITM9P,FGF19,FGF4,RNU6-1175P,ANO1-AS1,H2AFZP4,MIR548K,SHANK2-AS2,SHANK2-AS3,MIR3664,MIR6754,KRTAP5-7,KRTAP5-8,KRTAP5-10,UNC93B1,TCIRG1,CHKA,TESMIN,MRPL21,IGHMBP2,MRGPRF,LINC01488,CCND1,LTO1,FGF3,LINC02584,FADD,PPFIA1,CTTN,SHANK2-AS1,FLJ42102,NADSYN1,KRTAP5-9,ALDH3B1,LRP5,PPP6R3,CPT1A,TPCN2,MYEOV,ANO1,SHANK2,DHCR7,KMT5B
Controls
No Control Data Available
No Animal Model Data Available