10q24.1CNV Type: Duplication
Largest CNV size: 156958 bp
Statistics Box:
Number of Reports: 7
Number of Reports: 7
Summary Information
Summary statement in development
Additional Locus Information
References
Major Reports
Title
Author, Year
Report Class
CNV Type
An evidence-based approach to establish the functional and clinical significance of copy number variants in intellectual and developmental disabili...
Duplication
Identification of genetic causes of congenital neurodevelopmental disorders using genome wide molecular technologies.
Duplication
Minor Reports
Title
Author, Year
Report Class
CNV Type
Multiple recurrent de novo CNVs, including duplications of the 7q11.23 Williams syndrome region, are strongly associated with autism.
Duplication
Performance of case-control rare copy number variation annotation in classification of autism.
Duplication
Chromosomal microarray in clinical diagnosis: a study of 337 patients with congenital anomalies and developmental delays or intellectual disability.
Deletion
Cases
Cohort ID
Author, Year
Descripton
Cohort Size
Diagnosis
Age
Gender
CNV Size
Deletion
Duplication
Total CNV's
digregorio_17_DD/ID_discovery_cases
Consecutive cases examined in the Medical Genetics Unit at the "Citta della Salte e della Scienza" University Hospital (Turin, Italy) from 2008 to 2014 (cases with CNVs are present in DECIPHER database)
1015
Cases diagnosed with idiopathic developmental delay and/or intellectual disability (DD/ID)
N/A
N/A
357000
1
0
1
egle_16_DD/ID_discovery_cases
Patients assessed in the course of the Lithuanian-Swiss cooperation programme "Research and Development", the joint research project "Unique Genome Variants in Congenital Neurodevelopment Disorders: Origin, Genomic Mechanisms, Functional and Clinical Consequences" (UNIGENE)
66
All cases present with either syndromic or non-syndromic developmental delay/intellectual disability (DD/ID), ranging from mild to profound
N/A
N/A
500000
0
1
1
engchuan_15_ASD_discovery_cases
Samples from the Autism Genome Project (AGP)
1892
Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
N/A
85.78% Male
84251
0
1
1
kaminsky_11_DD/ID/ASD_discovery_cases
Cases from the International Standards for Cytogenomic Arrays (ISCA) consortium
15749
Unexplained developmental delay, intellectual disability, dysmorphic features, multiple congenital anomalies, autism spectrum disorders, or clinical features suggestive of a chromosomal syndrome
NA
NA
781022
0
1
1
krumm_15_ASD_discovery_cases
Probands from the Simons Simplex Collection
2377
Diagnosis of ASD
N/A
N/A
144560
0
2
2
sanders_11_ASD_discovery_cases
Autistic probands from the Simons Simplex Collection (SSC). 872 probands in quartet families, 272 probands in trios.
1124
ASD diagnosis: 89.5% autism; 8.5% PDD-NOS, 2% Asperger syndrome. Mean full-scale IQ 85.1 1.5 (mean verbal IQ, 81.9 1.7; mean non-verbal IQ, 88.4 1.4)
Mean, 9.1 yrs.
86.1% Male
156958
0
1
1
sansovic_17_DD/ID/ASD_discovery_cases
Unrelated patients from Croatia referred to the Department of Medical Genetics and Reproductive Health, Children's Hospital Zagreb, University of Zagreb School of Medicine
337
Cases diagnosed by clinical geneticists or pediatricians to have developmental delay/intellectual disability (DD/ID), ASD, congenital anomalies, or a combination of those features
Mean, 7 years (range, 1 month-25 years)
N/A
316000
1
0
1
Controls
Cohort ID
Author, Year
Descripton
Cohort Size
Diagnosis
Age
Gender
CNV Size
Deletion
Duplication
Total CNV's
egle_16_DD/ID_discovery_controls
CNVs from the Database of Genomic Variants (DGV)
N/A
Control
N/A
N/A
0
0
0
0
engchuan_15_ASD_discovery_controls
Platform-matched controls from three large studies: SAGE (Study of Addiction Genetics and Environment), Ontario Colorectal Cancer study, and HABC (Health Aging and Body Composition)
2342
Controls; subjects had no previous psychiatric history
N/A
46.67% Male
158350
0
2
2
kaminsky_11_DD/ID/ASD_discovery_controls
Controls from the International Standards for Cytogenomic Arrays (ISCA) consortium
10118
Controls
NA
NA
NA
NA
NA
NA
krumm_15_ASD_discovery_controls
Unaffected siblings from quad families from the Simons Simplex Collection
1786
Control
N/A
N/A
10957
0
1
1
poultney_13_ASD_discovery_controls
Controls matched for European ancestry from NIMH and CEPH retained after filtering (original cohort size of 379 controls)
260
Control
N/A
47.49% Male (before filtering)
88713
0
1
1
sanders_11_ASD_discovery_controls
Matched siblings of autistic probands from the Simons Simplex Collection (SSC).
872
Controls
Mean, 10.0 yrs.
0
0
0
0
Cases
Cohort ID
Geographical Ancestry
Discovery Method
Platform
Algorithm
Software
Validation Method
digregorio_17_DD/ID_discovery_cases
Italian
aCGH
Agilent 60K (SurePrint G3 Human CGH Microarray 8x60K)
ADM-2
Agilent CGH Analytics software ver. 4.0.81
qPCR
egle_16_DD/ID_discovery_cases
Lithuania
aCGH
Agilent 60K, Agilent 105K, or Agilent 1M
ADM-2
Feature Extraction 10.7.3.1, CytoGenomics 3.0.0.27 (Agilent)
FISH or RT-PCR
engchuan_15_ASD_discovery_cases
Caucasian
Solid phase hybridization
Illumina 1M
None
kaminsky_11_DD/ID/ASD_discovery_cases
NA
aCGH
Agilent 44K, Agilent 105K
Feature Extraction, DNA Analytics
FISH, qPCR, MLPA, aCGH, standard G-banded chromosome analysis
krumm_15_ASD_discovery_cases
N/A
WES
CoNIFER, XHMM
Solid phase hybridization (Illumina 1M, 1 M Duo, or Omni 2.5)
sanders_11_ASD_discovery_cases
White non-Hispanic, 74.5%; mixed, 9.3%, Asian, 4.3%, White Hispanic, 4.0%, African-American, 3.8%; other, 4.2&
Solid phase hybridization
Illumina 1M v1, Illumina 1M v3
PennCNV, QuantiSNP, GNOSIS
sansovic_17_DD/ID/ASD_discovery_cases
Croatia
aCGH
Agilent SurePrint G3 Unrestricted CGH ISCA v2
Agilent Feature Extraction (v12.0), Agilent CytoGenomics (v3.0 and v4.0)
None
Controls
Cohort ID
Geographical Ancestry
Discovery Method
Platform
Algorithm
Software
Validation Method
egle_16_DD/ID_discovery_controls
N/A
N/A
N/A
engchuan_15_ASD_discovery_controls
Caucasian
Solid phase hybridization
Illumina 1M
None
kaminsky_11_DD/ID/ASD_discovery_controls
NA
aCGH
Agilent 44K, Agilent 105K
Feature Extraction, DNA Analytics
krumm_15_ASD_discovery_controls
N/A
WES
CoNIFER, XHMM
Solid phase hybridization (Illumina 1M, 1 M Duo, or Omni 2.5)
poultney_13_ASD_discovery_controls
European
WES
Agilent SureSelect Human All Exon v.2
XHMM
None
sanders_11_ASD_discovery_controls
Solid phase hybridization
Illumina 1M v1 or Illumina 1M v3
PennCNV, QuantiSNP, GNOSIS
Cases
Patient ID
Author, Year
Age
Gender
Primary Diagnosis
Clinical Profile
Cognitive Profile
CNV Start
CNV End
CNV Size
Genome Build
Type Method
Validation
digregorio_17_DD/ID_discovery_cases-DECIPHER_299917
N/A
M
Cognitive impairment
Cognitive impairment
95614111
95971642
357532
GRCh38
Deletion
Yes
egle_16_DD/ID_discovery_cases-case21_1
3 yrs.
M
Developmental delay
Microcephaly, ocular hypertelorism
Developmental delay
95788702
96251592
462891
GRCh38
Duplication
Yes
engchuan_15_ASD_discovery_cases-case13236_2623
N/A
N/A
ASD
Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
97027597
97111848
84252
GRCh38
Duplication
No
kaminsky_11_DD/ID/ASD_discovery_cases-ISCA00005317
NA
NA
Developmental delay/intellectual disability/ASD
Clinical profile NA
Cognitive profile NA
96601018
97382040
781023
GRCh38
Duplication
Yes
krumm_15_ASD_discovery_cases-case12555.p1
N/A
Male
ASD
Proband from the Simons Simplex Collection (SSC). Family type: Trio
97319453
97464013
144561
GRCh38
Duplication
Yes
krumm_15_ASD_discovery_cases-case13070.p1
N/A
Male
ASD
Proband from the Simons Simplex Collection (SSC). Family type: Quad
97430954
97443311
12358
GRCh38
Duplication
Yes
sanders_11_ASD_discovery_cases-12555.p1
16.9
M
Autism
NA
Full-scale IQ, 119; non-verbal IQ, 113; verbal IQ, 126
97307532
97464490
156959
GRCh38
Duplication
No
sansovic_17_DD/ID/ASD_discovery_cases-case52
9 yrs.
F
Developmental delay/intellectual disability
Developmental delay/intellectual disability, Dysmorphism
95471078
95786713
315636
GRCh38
Deletion
No
Controls
Patient ID
Author, Year
Age
Gender
Primary Diagnosis
Clinical Profile
Cognitive Profile
CNV Start
CNV End
CNV Size
Genome Build
Type Method
Validation
engchuan_15_ASD_discovery_controls-controlB784823_1007875340
N/A
N/A
Control
No previous psychiatric history
97026019
97111848
85830
GRCh38
Duplication
No
engchuan_15_ASD_discovery_controls-controlHABC_902802_902802
N/A
N/A
Control
No previous psychiatric history
96914590
97072940
158351
GRCh38
Duplication
No
krumm_15_ASD_discovery_controls-control13070.s1
N/A
Male
Control
Unaffected sibling from the Simons Simplex Collection (SSC)
97432354
97443311
10958
GRCh38
Duplication
Yes
poultney_13_ASD_discovery_controls-control04C29878A
N/A
F
Control
NIMH Control (NIMH ID 53597)
96949056
97037768
88713
GRCh38
Duplication
No
Cases
Patient ID
Validation Description
Primary Disorder Inheritence
Inheritence
Family Profile
Disease Segregation
Gene Content
Altered Gene Expression
digregorio_17_DD/ID_discovery_cases-DECIPHER_299917
qPCR
Maternal
ALDH18A1,TCTN3,ENTPD1,ENTPD1-AS1,CC2D2B
egle_16_DD/ID_discovery_cases-case21_1
FISH or RT-PCR
Maternal
RPL21P90,MIR3157,RNU6-271P,NPM1P25,CCNJ,ZNF518A,ENTPD1,ENTPD1-AS1,CC2D2B,BLNK
engchuan_15_ASD_discovery_cases-case13236_2623
Unknown
SLIT1-AS1,SLIT1
kaminsky_11_DD/ID/ASD_discovery_cases-ISCA00005317
FISH, qPCR, MLPA, aCGH, or standard G-banded chromosome analysis
De novo
Unknown
Unknown
RNA5SP324,RPS2P36,RNU6-1274P,RPL13AP5,MIR607,HMGN2P35,SLIT1-AS1,RPL12P27,FRAT2,FRAT1,PIK3AP1,LCOR,SLIT1,ARHGAP19-SLIT1,ARHGAP19,RRP12
krumm_15_ASD_discovery_cases-case12555.p1
Illumina 1MDuo
Maternal
Simplex
Segregated
FRAT2,RPL34P20,PGAM1,EXOSC1,FRAT1,ZDHHC16,MMS19,RRP12
krumm_15_ASD_discovery_cases-case13070.p1
Illumina 1MDuo
Maternal
Simplex
Not segregated (CNV in unaffected sibling)
PGAM1,EXOSC1
sanders_11_ASD_discovery_cases-12555.p1
Maternal
Simplex (quad-proband matched)
Segregated
RPL12P27,FRAT2,RPL34P20,PGAM1,EXOSC1,FRAT1,ZDHHC16,MMS19,RRP12
sansovic_17_DD/ID/ASD_discovery_cases-case52
Maternal
RPS3AP36,ALDH18A1,TCTN3,ENTPD1,ENTPD1-AS1,SORBS1
Controls
Patient ID
Validation Description
Primary Disorder Inheritence
Inheritence
Family Profile
Disease Segregation
Gene Content
Altered Gene Expression
engchuan_15_ASD_discovery_controls-controlB784823_1007875340
Unknown
SLIT1-AS1,SLIT1
engchuan_15_ASD_discovery_controls-controlHABC_902802_902802
Unknown
HMGN2P35,LCOR,SLIT1
krumm_15_ASD_discovery_controls-control13070.s1
Illumina 1MDuo
Maternal
PGAM1,EXOSC1
poultney_13_ASD_discovery_controls-control04C29878A
Unknown
LCOR,SLIT1
No Animal Model Data Available