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10q22.1CNV Type: Deletion


Largest CNV size: 222643 bp

Statistics Box:
Number of Reports: 9



Summary Information

Summary statement in development

Additional Locus Information

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USCS Symbol             NCBI Symbol

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            Decipher Symbol

References

Major Reports

Title
Author, Year
Report Class
CNV Type
An evidence-based approach to establish the functional and clinical significance of copy number variants in intellectual and developmental disabili...
Duplication
Excess of rare, inherited truncating mutations in autism.
Deletion-Duplication
Copy number variation in 19 Italian multiplex families with autism spectrum disorder: Importance of synaptic and neurite elongation genes.
Deletion

Minor Reports

Title
Author, Year
Report Class
CNV Type
Multiple recurrent de novo CNVs, including duplications of the 7q11.23 Williams syndrome region, are strongly associated with autism.
Deletion
Rare de novo and transmitted copy-number variation in autistic spectrum disorders.
Deletion
Transmission disequilibrium of small CNVs in simplex autism.
Deletion
Identification of risk genes for autism spectrum disorder through copy number variation analysis in Austrian families.
Deletion
Performance of case-control rare copy number variation annotation in classification of autism.
Duplication
Genome-wide analysis of copy number variations identifies PARK2 as a candidate gene for autism spectrum disorder.
Duplication

Cases

Cohort ID
Author, Year
Descripton
Cohort Size
Diagnosis
Age
Gender
CNV Size
Deletion
Duplication
Total CNV's
 egger_14_ASD_discovery_cases
 ASD probands from Austria (71 simplex, 2 multiplex) recruited from the catchment area of Styria using three recruitment sites (Institute of Human Genetics, Medical University of Graz, Club Libelle, Center for Autism, Styria, and Children's Hospital, University Hospital Graz).
 73
 Diagnosis of ASD made using ADOS and ADI-R according to DSM-IV or DSM-V categories
 N/A
 80.82% Male
 45445
 1
 0
 1
 engchuan_15_ASD_discovery_cases
 Samples from the Autism Genome Project (AGP)
 1892
 Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
 N/A
 85.78% Male
 51921
 0
 1
 1
 kaminsky_11_DD/ID/ASD_discovery_cases
 Cases from the International Standards for Cytogenomic Arrays (ISCA) consortium
 15749
 Unexplained developmental delay, intellectual disability, dysmorphic features, multiple congenital anomalies, autism spectrum disorders, or clinical features suggestive of a chromosomal syndrome
 NA
 NA
 486496
 0
 1
 1
 krumm_13_ASD_discovery_cases
 Probands from quad families ascertained as part of the Simons Simplex Collection (SSC); CNVs detected using data from four previously published exome sequencing studies (O'Roak et al., 2011; Iossifov et al., 2012; O'Roak et al., 2012; Sanders et al., 2012)
 411
 Diagnosis of ASD. Social Responsiveness Scale (SRS) used as a quantitative measure of social deficits
 N/A
 81.265% Male
 41457
 1
 0
 1
 krumm_15_ASD_discovery_cases
 Probands from the Simons Simplex Collection
 2377
 Diagnosis of ASD
 N/A
 N/A
 46552
 2
 1
 3
 levy_11_ASD_discovery_cases
 Autistic probands from 887 families from the Simons Simplex Collection (SSC)
 858
 ASD
 
 87.06% Male
 211832
 1
 0
 1
 lintas_17_ASD_discovery_cases
 ASD cases from 19 Italian ASD multiplex families with either two (N=16) or three (N=3) autistic children
 41
 Cases were assessed with ADOS and ADI-R, Vineland Adaptive Behavior Scales, and either the Wechsler Intelligence Scales for Children (WISC), Griffith Mental Developmental Scales, Colored Raven Matrices, or Leiter International Performance Scale.
 N/A
 87.80% Male
 34213
 2
 0
 2
 sanders_11_ASD_discovery_cases
 Autistic probands from the Simons Simplex Collection (SSC). 872 probands in quartet families, 272 probands in trios.
 1124
 ASD diagnosis: 89.5% autism; 8.5% PDD-NOS, 2% Asperger syndrome. Mean full-scale IQ 85.1 1.5 (mean verbal IQ, 81.9 1.7; mean non-verbal IQ, 88.4 1.4)
 Mean, 9.1 yrs.
 86.1% Male
 222643
 1
 0
 1
 yin_16_ASD_discovery_cases
 Discovery cohort of ASD cases recruited from the Department of Psychiatry of National Taiwan University Hospital (NTUH), Chang Gung Memorial Hospital (CGMH), Taoyuan, and Taoyuan Mental Hospital (TMH), Taiwan.
 335
 Cases diagnosed with autistic disorder according to DSM-IV and confirmed by using the Chinese version of ADI-R. Cases' autistic behaviors assessed by Social Responsiveness Scale (SRS), and cognitive functions assessed by the Weschler Intelligence Scale for Children-Third Edition (WISC-III) and the Wisconsin Card Sorting Test (WCST).
 Mean, 9.39 4.04 yrs.
 89.3% Male
 113626
 0
 1
 1

Controls

Cohort ID
Author, Year
Descripton
Cohort Size
Diagnosis
Age
Gender
CNV Size
Deletion
Duplication
Total CNV's
 egger_14_ASD_discovery_controls
 CNV data from POPGEN (n=1,123) and the Ottawa Heart Institute (n=1,234)
 2357
 Control
 N/A
 N/A
 0
 0
 0
 0
 engchuan_15_ASD_discovery_controls
 Platform-matched controls from three large studies: SAGE (Study of Addiction Genetics and Environment), Ontario Colorectal Cancer study, and HABC (Health Aging and Body Composition)
 2342
 Controls; subjects had no previous psychiatric history
 N/A
 46.67% Male
 174420
 1
 1
 2
 kaminsky_11_DD/ID/ASD_discovery_controls
 Controls from the International Standards for Cytogenomic Arrays (ISCA) consortium
 10118
 Controls
 NA
 NA
 NA
 NA
 NA
 NA
 krumm_13_ASD_discovery_controls
 Unaffected siblings of ASD probands from quad families ascertained as part of the Simons Simplex Collection (SSC); CNVs detected using data from four previously published exome sequencing studies (O'Roak et al., 2011; Iossifov et al., 2012; O'Roak et al., 2012; Sanders et al., 2012)
 411
 Control (unaffected siblings of ASD probands). Social Responsiveness Scale (SRS) used as a quantitative measure of social deficits
 N/A
 46.47% Male
 41457
 1
 0
 1
 krumm_15_ASD_discovery_controls
 Unaffected siblings from quad families from the Simons Simplex Collection
 1786
 Control
 N/A
 N/A
 41457
 1
 0
 1
 levy_11_ASD_discovery_controls
 Unaffected siblings of autistic probands from 887 families from the Simons Simplex Collection (SSC)
 863
 Control
 
 47.97% Male
 211832
 1
 0
 1
 sanders_11_ASD_discovery_controls
 Matched siblings of autistic probands from the Simons Simplex Collection (SSC).
 872
 Controls
 Mean, 10.0 yrs.
 
 222643
 2
 1
 3
 yin_16_ASD_discovery_controls
 Individuals from the Han Chinese Cell and Genome Bank (HCCGB) in Taiwan
 1093
 Controls
 Mean, 68.07 10.12 yrs.
 48.0% Male
 113626
 0
 0
 0

Cases

Cohort ID
Geographical Ancestry
Discovery Method
Platform
Algorithm
Software
Validation Method
 egger_14_ASD_discovery_cases
  68 European, 2 Asian, 1 African, 1 Turkish, 1 Egyptian
 Array SNP
  Affymetrix 6.0
 Birdsuite, iPattern, Affymetrix Genotyping Console
 
 None
 engchuan_15_ASD_discovery_cases
  Caucasian
 Solid phase hybridization
  Illumina 1M
 
 
 None
 kaminsky_11_DD/ID/ASD_discovery_cases
  NA
 aCGH
  Agilent 44K, Agilent 105K
 
 Feature Extraction, DNA Analytics
 FISH, qPCR, MLPA, aCGH, standard G-banded chromosome analysis
 krumm_13_ASD_discovery_cases
  N/A
 WES
  Whole exome sequencing platforms used in four recent publications (O'Roak et al., 2011; Sanders et al., 2012; O'Roak et al., 2012, and Iossifov et al., 2012)
 DNACopy, CGHCall
 CoNIFER
 None
 krumm_15_ASD_discovery_cases
  N/A
 WES
 
 CoNIFER, XHMM
 
 Solid phase hybridization (Illumina 1M, 1 M Duo, or Omni 2.5)
 levy_11_ASD_discovery_cases
 
 aCGH
  NimbleGen HD2
 HMM
 
 
 lintas_17_ASD_discovery_cases
  Italy
 aCGH
  Agilent Human Genome CGH SurePrint G3 4x180K
 ADM-2
 Agilent Feature Extraction v10.7, Agilent Cytogenomic Software v2.9
 Validation by visual inspection, RT-PCR, or PCR
 sanders_11_ASD_discovery_cases
  White non-Hispanic, 74.5%; mixed, 9.3%, Asian, 4.3%, White Hispanic, 4.0%, African-American, 3.8%; other, 4.2&
 Solid phase hybridization
  Illumina 1M v1, Illumina 1M v3
 PennCNV, QuantiSNP, GNOSIS
 
 
 yin_16_ASD_discovery_cases
  Han Chinese
 Array SNP
  Affymetrix 6.0
 
 Affymetrix Genotyping Console v.4.1
 None

Controls

Cohort ID
Geographical Ancestry
Discovery Method
Platform
Algorithm
Software
Validation Method
  egger_14_ASD_discovery_controls
  European
  N/A
  N/A
 
 
 
  engchuan_15_ASD_discovery_controls
  Caucasian
  Solid phase hybridization
  Illumina 1M
 
 
  None
  kaminsky_11_DD/ID/ASD_discovery_controls
  NA
  aCGH
  Agilent 44K, Agilent 105K
 
  Feature Extraction, DNA Analytics
 
  krumm_13_ASD_discovery_controls
  N/A
  WES
  Whole exome sequencing platforms used in four recent publications (O'Roak et al., 2011; Sanders et al., 2012; O'Roak et al., 2012, and Iossifov et al., 2012)
  DNACopy, CGHCall
  CoNIFER
  Solid phase hybridization (Illumina 1M), aCGH (Agilent SurePrint G3 4x180K), or confirmed by manual inspection
  krumm_15_ASD_discovery_controls
  N/A
  WES
 
  CoNIFER, XHMM
 
  Solid phase hybridization (Illumina 1M, 1 M Duo, or Omni 2.5)
  levy_11_ASD_discovery_controls
 
  aCGH
  NimbleGen HD2
  HMM
 
 
  sanders_11_ASD_discovery_controls
 
  Solid phase hybridization
  Illumina 1M v1 or Illumina 1M v3
  PennCNV, QuantiSNP, GNOSIS
 
 
  yin_16_ASD_discovery_controls
  Han Chinese
  Array SNP
  Affymetrix 6.0
 
  Affymetrix Genotyping Console v.4.1
  None

Cases

Patient ID
Author, Year
Age
Gender
Primary Diagnosis
Clinical Profile
Cognitive Profile
CNV Start
CNV End
CNV Size
Genome Build
Type Method
Validation
  egger_14_ASD_discovery_cases-caseA67
 16 yrs. (born 1998)
 F
 ASD
 Diagnosis: early infantile autism/high functioning autism. Co-morbidities/additional features: speech present; obesity (BMI 28.7). Family history: none reported. CNV: high stringency genic CNV call (2 or more algorithms), with no overlapping calls in 2,357 POPGEN and OHI controls, and <50% overlap in DGV.
 Cognitive impairment (IQ 60-80)
 72755141
 72800585
  45445
 GRCh38
 Deletion
 No
  engchuan_15_ASD_discovery_cases-case2183_1
 N/A
 N/A
 ASD
 Diagnosis of ASD based on Autism Diagnostic Observation Schedule (ADOS) and Autism Diagnostic Interview-Revised (ADI-R)
 
 71231338
 71283259
  51922
 GRCh38
 Duplication
 No
  kaminsky_11_DD/ID/ASD_discovery_cases-ISCA00001090
 NA
 NA
 Developmental delay/intellectual disability/ASD
 Clinical profile NA
 Cognitive profile NA
 70036168
 70522664
  486497
 GRCh38
 Duplication
 Yes
  krumm_13_ASD_discovery_cases-case11267.p1
 N/A
 F
 ASD
 ASD proband from SSC quad family 11267. SRS score of 90.
 Full-scale IQ (FSIQ) score of 85.
 70844472
 70885929
  41458
 GRCh38
 Deletion
 No (not tested)
  krumm_15_ASD_discovery_cases-case11267.p1
 N/A
 Female
 ASD
 Proband from the Simons Simplex Collection (SSC). Family type: Quad
 
 70844472
 70885929
  41458
 GRCh38
 Deletion
 Yes
  krumm_15_ASD_discovery_cases-case13376.p1
 N/A
 Male
 ASD
 Proband from the Simons Simplex Collection (SSC). Family type: Trio
 
 70877194
 70885244
  8051
 GRCh38
 Deletion
 Yes
  krumm_15_ASD_discovery_cases-case13762.p1
 N/A
 Male
 ASD
 Proband from the Simons Simplex Collection (SSC). Family type: Trio
 
 70254956
 70301508
  46553
 GRCh38
 Duplication
 Yes
  levy_11_ASD_discovery_cases-11267.p1
 NA
 F
 ASD
 NA
 NA
 70842086
 71053917
  211832
 GRCh38
 Deletion
 No
  lintas_17_ASD_discovery_cases-case13.1
 N/A
 M
 Autism
 No additional clinical information available
 
 72400158
 72434371
  34214
 GRCh38
 Deletion
 Yes
  lintas_17_ASD_discovery_cases-case13.2
 N/A
 M
 Autism
 No additional clinical information available
 
 72400158
 72434371
  34214
 GRCh38
 Deletion
 Yes
  sanders_11_ASD_discovery_cases-11267.p1
 13.2
 F
 Autism
 NA
 Full-scale IQ, 85; non-verbal IQ, 91; verbal IQ, 79
 70842056
 71064699
  222644
 GRCh38
 Deletion
 No
  yin_16_ASD_discovery_cases-case392
 N/A
 N/A
 ASD
 Cases diagnosed with autistic disorder according to DSM-IV and confirmed by using the Chinese version of ADI-R.
 
 73134205
 73247830
  113626
 GRCh38
 Duplication
 No

Controls

Patient ID
Author, Year
Age
Gender
Primary Diagnosis
Clinical Profile
Cognitive Profile
CNV Start
CNV End
CNV Size
Genome Build
Type Method
Validation
  engchuan_15_ASD_discovery_controls-controlB585116_1007872290
  N/A
  N/A
  Control
  No previous psychiatric history
 
  71946496
  72120916
  174421
  GRCh38
  Duplication
  No
  engchuan_15_ASD_discovery_controls-controlB999735_1007854262
  N/A
  N/A
  Control
  No previous psychiatric history
 
  70138242
  70232762
  94521
  GRCh38
  Deletion
  No
  krumm_13_ASD_discovery_controls-control11267.s1
  N/A
  M
  Control
  Unaffected sibling from SSC quad family 11267. SRS score of 54.
 
  70844472
  70885929
  41458
  GRCh38
  Deletion
  Yes
  krumm_15_ASD_discovery_controls-control11267.s1
  N/A
  Male
  Control
  Unaffected sibling from the Simons Simplex Collection (SSC)
 
  70844472
  70885929
  41458
  GRCh38
  Deletion
  Yes
  levy_11_ASD_discovery_controls-11267.s1
  NA
  M
  Control
  NA
  NA
  70842086
  71053917
  211832
  GRCh38
  Deletion
  No
  sanders_11_ASD_discovery_controls-11267.s1
  10.3
  M
  Control (matched sibling)
  NA
  NA
  70842056
  71064699
  222644
  GRCh38
  Deletion
  No
  sanders_11_ASD_discovery_controls-11798.s1
  7.2
  F
  Control (matched sibling)
  NA
  NA
  72494847
  72507601
  12755
  GRCh38
  Deletion
  No
  sanders_11_ASD_discovery_controls-12261.s1
  21.5
  M
  Control (matched sibling)
  NA
  NA
  71231338
  71277142
  45805
  GRCh38
  Duplication
  No

Cases

Patient ID
Validation Description
Primary Disorder Inheritence
Inheritence
Family Profile
Disease Segregation
Gene Content
Altered Gene Expression
 egger_14_ASD_discovery_cases-caseA67
 
 
 Unknown
 
 Unknown
 MCU
 
 engchuan_15_ASD_discovery_cases-case2183_1
 
 
 Unknown
 
 
 UNC5B
 
 kaminsky_11_DD/ID/ASD_discovery_cases-ISCA00001090
 FISH, qPCR, MLPA, aCGH, or standard G-banded chromosome analysis
 
 Maternal
 Unknown
 Unknown
 CALM2P2,RPS25P9,CEP57L1P1,YY1P1,H2AFY2,TYSND1,SAR1A,PPA1,LRRC20,EIF4EBP2,NODAL,AIFM2,PALD1,NPFFR1
 
 krumm_13_ASD_discovery_cases-case11267.p1
 
 
 Maternal
 Simplex
 Not segregated
 PCBD1,SGPL1
 
 krumm_15_ASD_discovery_cases-case11267.p1
 Illumina 1M
 
 Maternal
 Simplex
 Not segregated (CNV in unaffected sibling)
 PCBD1,SGPL1
 
 krumm_15_ASD_discovery_cases-case13376.p1
 1M-Duov3
 
 Maternal
 Simplex
 Segregated
 PCBD1,SGPL1
 
 krumm_15_ASD_discovery_cases-case13762.p1
 Omni2.5-4v1
 
 Paternal
 Simplex
 Segregated
 LRRC20,NPFFR1
 
 levy_11_ASD_discovery_cases-11267.p1
 
 
 Maternal
 Simplex
 Not segregated
 PCBD1,SGPL1
 
 lintas_17_ASD_discovery_cases-case13.1
 Validation by visual inspection, RT-PCR, or PCR
 
 Maternal
 Multiplex
 Segregated (CNV observed in all both affected siblings)
 MICU1
 
 lintas_17_ASD_discovery_cases-case13.2
 Validation by visual inspection, RT-PCR, or PCR
 
 Maternal
 Multiplex
 Segregated (CNV observed in all both affected siblings)
 MICU1
 
 sanders_11_ASD_discovery_cases-11267.p1
 
 
 Maternal
 Simplex (quad-proband matched)
 Not segregated
 PCBD1,SGPL1
 
 yin_16_ASD_discovery_cases-case392
 
 
 Unknown
 Unknown
 Unknown
 EIF4A2P2,FAM149B1,DNAJC9,ECD
 

Controls

Patient ID
Validation Description
Primary Disorder Inheritence
Inheritence
Family Profile
Disease Segregation
Gene Content
Altered Gene Expression
engchuan_15_ASD_discovery_controls-controlB585116_1007872290
 
 
  Unknown
 
 
  CHST3,SPOCK2,ASCC1
 
engchuan_15_ASD_discovery_controls-controlB999735_1007854262
 
 
  Unknown
 
 
  CALM2P2,RPS25P9,TYSND1,SAR1A,PPA1
 
krumm_13_ASD_discovery_controls-control11267.s1
  Solid phase hybridization (Illumina 1M) and aCGH (Agilent SurePrint G3 4x180K)
 
  Maternal
  Simplex
 
  PCBD1,SGPL1
 
krumm_15_ASD_discovery_controls-control11267.s1
  Illumina 1M
 
  Maternal
 
 
  PCBD1,SGPL1
 
levy_11_ASD_discovery_controls-11267.s1
 
 
  Maternal
  Simplex
  NA
  PCBD1,SGPL1
 
sanders_11_ASD_discovery_controls-11267.s1
 
 
  Maternal
  Simplex (quad)
  NA
  PCBD1,SGPL1
 
sanders_11_ASD_discovery_controls-11798.s1
 
 
  Paternal
  Simplex (quad)
  NA
  MICU1
 
sanders_11_ASD_discovery_controls-12261.s1
 
 
  Maternal
  Simplex (quad)
  NA
  UNC5B
 

No Animal Model Data Available
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