10p15.3-p13CNV Type: Deletion
Largest CNV size: 15525172 bp
Statistics Box:
Number of Reports: 3
Number of Reports: 3
Summary Information
Rare singleton deletion within this region was found in a case from a study of 15,749 individuals from the International Standards for Cytogenomic Arrays (ISCA) consortium with unexplained developmental delay, intellectual disability, dysmorphic features, multiple congenital anomalies, autism spectrum disorders, or clinical features suggestive of a chromosomal syndrome (Kaminsky et al., 2011).
Additional Locus Information
References
Major Reports
Title
Author, Year
Report Class
CNV Type
An evidence-based approach to establish the functional and clinical significance of copy number variants in intellectual and developmental disabili...
Deletion
Minor Reports
Cases
Cohort ID
Author, Year
Descripton
Cohort Size
Diagnosis
Age
Gender
CNV Size
Deletion
Duplication
Total CNV's
chaves_24_ASD/DD/ID_discovery_cases
CMA read files performed by the Laboratrio Neurogene in Florianpolis, Santa Catarina, Brazil, upon request by medical geneticists and neurologists for investigative/diagnostic purposes, primarily from the Joana de Gusmo Children's Hospital, but also from MDs from the University Hospital Professor Polydoro Ernani de So Thiago and from private clinics in Florianpolis, State of Santa Catarina, betwee
1012
83% of cases presented with developmental delay (DD) and/or intellectual disability (ID), with 33% of cases presented with autism spectrum disorder.
Mean age, 10yrs. (median7.15 yrs., standard deviation10.2).
60.77% Male
14657864
0
2
2
digregorio_17_DD/ID_discovery_cases
Consecutive cases examined in the Medical Genetics Unit at the "Citta della Salte e della Scienza" University Hospital (Turin, Italy) from 2008 to 2014 (cases with CNVs are present in DECIPHER database)
1015
Cases diagnosed with idiopathic developmental delay and/or intellectual disability (DD/ID)
N/A
N/A
12000000
1
0
1
kaminsky_11_DD/ID/ASD_discovery_cases
Cases from the International Standards for Cytogenomic Arrays (ISCA) consortium
15749
Unexplained developmental delay, intellectual disability, dysmorphic features, multiple congenital anomalies, autism spectrum disorders, or clinical features suggestive of a chromosomal syndrome
NA
NA
15525172
1
0
1
Controls
Cohort ID
Author, Year
Descripton
Cohort Size
Diagnosis
Age
Gender
CNV Size
Deletion
Duplication
Total CNV's
kaminsky_11_DD/ID/ASD_discovery_controls
Controls from the International Standards for Cytogenomic Arrays (ISCA) consortium
10118
Controls
NA
NA
NA
NA
NA
NA
Cases
Cohort ID
Geographical Ancestry
Discovery Method
Platform
Algorithm
Software
Validation Method
chaves_24_ASD/DD/ID_discovery_cases
Brazil
Array SNP
Affymetrix CytoScan 750K, Affymetrix CytoScan HD
Affymetrix ChAS
digregorio_17_DD/ID_discovery_cases
Italian
aCGH
Agilent 60K (SurePrint G3 Human CGH Microarray 8x60K)
ADM-2
Agilent CGH Analytics software ver. 4.0.81
qPCR
kaminsky_11_DD/ID/ASD_discovery_cases
NA
aCGH
Agilent 44K, Agilent 105K
Feature Extraction, DNA Analytics
FISH, qPCR, MLPA, aCGH, standard G-banded chromosome analysis
Controls
Cohort ID
Geographical Ancestry
Discovery Method
Platform
Algorithm
Software
Validation Method
kaminsky_11_DD/ID/ASD_discovery_controls
NA
aCGH
Agilent 44K, Agilent 105K
Feature Extraction, DNA Analytics
Cases
Patient ID
Author, Year
Age
Gender
Primary Diagnosis
Clinical Profile
Cognitive Profile
CNV Start
CNV End
CNV Size
Genome Build
Type Method
Validation
chaves_24_ASD/DD/ID_discovery_cases-case1080
F
Developmental delay and seizures
Developmental delay (speaks few words), facial dysmorphism, seizures, agitation, lack of concentration, oblique palpebral fissures, flat feet, brachydactyly, possible vitiligo; mother has a translocation
54108
14711971
14657864
GRCh38
Duplication
No
digregorio_17_DD/ID_discovery_cases-DECIPHER_283328
N/A
M
Developmental delay/intellectual disability
102266
12169672
12067407
GRCh38
Deletion
Yes
kaminsky_11_DD/ID/ASD_discovery_cases-ISCA00004264
NA
NA
Developmental delay/intellectual disability/ASD
Clinical profile NA
Cognitive profile NA
90421
15569528
15479108
GRCh38
Deletion
Yes
Controls
No Control Data Available
Cases
Patient ID
Validation Description
Primary Disorder Inheritence
Inheritence
Family Profile
Disease Segregation
Gene Content
Altered Gene Expression
chaves_24_ASD/DD/ID_discovery_cases-case1080
Unknown
AKR1C4,ADARB2,CALML3,ATP5F1C,KLF6,AKR1C2,AKR1C1,RNU6-6P,CALML5,ANKRD16,TASOR2,FRMD4A,MCM10,SEC61A2,DHTKD1,IDI2-AS1,SFMBT2,CAMK1D,TUBAL3,ASB13,ECHDC3,CCDC3,FAM107B,TAF3,ITIH5,AKR1E2,FBH1,RBM17,IDI2,UCN3,PROSER2-AS1,SFTA1P,UCMA,IL15RA,ITIH2,IDI1,IL2RA,GATA3,GDI2,LINC00710,PROSER2,LINC00700,BEND7,CHCHD3P1,LINC00705,TUBB8,GATA3-AS1,LINC00701,LINC02656,LINC02649,LINC00200,AKR1C6P,PRPF38AP1,IL9RP2,BTBD7P1,DIP2C-AS1,PRKCQ-AS1,CELF2-AS2,CELF2-AS1,ADARB2-AS1,HSP90AB7P,RPL32P23,ELOCP3,AKR1C7P,RPL36AP36,NRBF2P5,CUX2P1,SDCBPP1,RPL26P28,CALML3-AS1,RPL6P24,MANCR,RPL12P28,KRT8P37,RPL5P25,MIR1265,MIR548Q,MIR3155A,MIR4293,LINC00703,LINC00708,PITRM1-AS1,LINC00707,MIR4481,MIR4480,LINC00709,RNA5SP299,LINC00702,RNA5SP301,MIR548AK,RNA5SP300,MIR3155B,MIR5699,LINC00706,SNRPGP5,AKR1C5P,LINC02660,LINC02669,PFKP-DT,PFKFB3,PFKP,PRKCQ,PHYH,LINC02648,CELF2-DT,LINC02670,MIR6072,MIR6078,LINC02665,LASTR,LINC02663,LINC02645,LINC02642,LINC02668,LINC02639,LINC02662,RNA5SP302,RNA5SP297,LINC02676,RN7SKP78,RN7SL198P,RNU6-88P,RNU6-535P,COX6CP17,RNU6-889P,RNU6-576P,RNU6-163P,RN7SL754P,RNU6ATAC39P,RN7SL445P,RNA5SP298,RNU6-1095P,RBISP1,NUTF2P5,USP6NL-AS1,ARL4AP3,LINP1,LINC02561,CDC123,PRPF18,AKR1C3,OPTN,USP6NL,CELF2,NUDT5,NET1,PITRM1,WDR37,ZMYND11,GTPBP4,KIN,UPF2,DIP2C,LARP4B,SEPHS1
digregorio_17_DD/ID_discovery_cases-DECIPHER_283328
qPCR
Paternal (translocation)
RNA5SP297,RNA5SP298,RN7SL754P,MIR5699,IDI2,LINC00700,MIR6072,RNU6-889P,RNU6-576P,MIR6078,RNU6-163P,LINC00705,ARL4AP3,LINC02561,RPL26P28,TUBAL3,CALML5,CALML3,RN7SL445P,NRBF2P5,RPL12P28,RPL32P23,RN7SKP78,MIR3155A,MIR3155B,SDCBPP1,LINC00706,COX6CP17,RNU6-535P,GATA3-AS1,PRPF38AP1,LINC00708,KRT8P37,CHCHD3P1,RNA5SP299,LINC00709,HSP90AB7P,CUX2P1,SFTA1P,CELF2-AS1,RNU6-1095P,RNU6-88P,MIR548AK,ZMYND11,GTPBP4,IDI2-AS1,WDR37,LINC00200,ADARB2-AS1,LINC00701,PFKP,KLF6,LINC00702,LINC00703,MANCR,AKR1E2,AKR1C6P,AKR1C2,AKR1C3,AKR1C5P,AKR1C8P,AKR1C4,AKR1C7P,NET1,CALML3-AS1,ASB13,FAM208B,ANKRD16,IL15RA,RBM17,PRKCQ-AS1,LINP1,KIN,ATP5F1C,GATA3,ELOCP3,LINC00710,CELF2-AS2,ECHDC3,PROSER2,PROSER2-AS1,DHTKD1,SEC61A2,DIP2C,PRR26,LARP4B,ADARB2,AKR1C1,UCN3,GDI2,FBH1,IL2RA,PFKFB3,PRKCQ,LINC00707,ITIH5,ITIH2,TAF3,CELF2,UPF2,NUDT5,IDI1,PITRM1,PITRM1-AS1,SFMBT2,USP6NL
kaminsky_11_DD/ID/ASD_discovery_cases-ISCA00004264
FISH, qPCR, MLPA, aCGH, or standard G-banded chromosome analysis
Unknown
Unknown
Unknown
RNA5SP297,RNA5SP298,RN7SL754P,MIR5699,IDI2,LINC00700,MIR6072,RNU6-889P,RNU6-576P,MIR6078,RNU6-163P,LINC00705,ARL4AP3,LINC02561,RPL26P28,TUBAL3,CALML5,CALML3,RN7SL445P,NRBF2P5,RPL12P28,RPL32P23,RN7SKP78,MIR3155A,MIR3155B,SDCBPP1,LINC00706,COX6CP17,RNU6-535P,GATA3-AS1,PRPF38AP1,LINC00708,KRT8P37,CHCHD3P1,RNA5SP299,LINC00709,HSP90AB7P,CUX2P1,SFTA1P,CELF2-AS1,RNU6-1095P,RNU6-88P,MIR548AK,RN7SL198P,RNU6ATAC39P,MIR4480,MIR4481,MIR548Q,RNA5SP300,SNRPGP5,BTBD7P1,RPL36AP36,RNU6-6P,C8orf59P1,RPL6P24,RNA5SP301,NUTF2P5,MIR4293,MIR1265,RNA5SP302,RPSAP7,OR7E110P,OR7E26P,OR7E115P,DCLRE1CP1,ACBD7,GAPDHP45,C10orf111,ZMYND11,GTPBP4,IDI2-AS1,WDR37,LINC00200,ADARB2-AS1,LINC00701,PFKP,KLF6,LINC00702,LINC00703,MANCR,AKR1E2,AKR1C6P,AKR1C2,AKR1C3,AKR1C5P,AKR1C8P,AKR1C4,AKR1C7P,NET1,CALML3-AS1,ASB13,FAM208B,ANKRD16,IL15RA,RBM17,PRKCQ-AS1,LINP1,KIN,ATP5F1C,GATA3,ELOCP3,LINC00710,CELF2-AS2,ECHDC3,PROSER2,PROSER2-AS1,DHTKD1,SEC61A2,CDC123,RPL5P25,MCM10,UCMA,PHYH,SEPHS1,PRPF18,CDNF,HSPA14,SUV39H2,MEIG1,RPP38,NMT2,PPIAP30,DIP2C,PRR26,LARP4B,ADARB2,AKR1C1,UCN3,GDI2,FBH1,IL2RA,PFKFB3,PRKCQ,LINC00707,ITIH5,ITIH2,TAF3,CELF2,UPF2,NUDT5,CCDC3,OPTN,BEND7,FRMD4A,DCLRE1C,OLAH,FAM171A1,ITGA8,IDI1,PITRM1,PITRM1-AS1,SFMBT2,USP6NL,CAMK1D,FAM107B
Controls
No Control Data Available
No Animal Model Data Available