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10p11.23-p11.22CNV Type: Deletion


Largest CNV size: 348392 bp

Statistics Box:
Number of Reports: 2



Summary Information

Summary statement in development

Additional Locus Information

Genome browsers

USCS Symbol             NCBI Symbol

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            Decipher Symbol

References

Major Reports

Title
Author, Year
Report Class
CNV Type
Structural variation of chromosomes in autism spectrum disorder.
Deletion
Agenesis of the corpus callosum, developmental delay, autism spectrum disorder, facial dysmorphism, and posterior polymorphous corneal dystrophy as...
Deletion

Minor Reports

Title
Author, Year
Report Class
CNV Type

No Minor Reports

Cases

Cohort ID
Author, Year
Descripton
Cohort Size
Diagnosis
Age
Gender
CNV Size
Deletion
Duplication
Total CNV's
 chaudhry_17_ASD/ADHD/DD_discovery_cases
 Female patient born to healthy and non-consanguineous parents presenting with a de novo 10p11.23-p11.22 deletion
 1
 Case diagnosed with autism spectrum disorder (ASD), attention deficit hyperactivity disorder (ADHD), and learning disability at age of 10 years; case also presented with agenesis of the corpus callosum with cerebral ventriculomegaly, developmental delay (primarily motor delay), dysmorphic features, and a diagnosis of posterior polymorphous corneal dystrophy (PPCD)
 13.5 years
 Female
 2050000
 1
 0
 1
 marshall_08_ASD_discovery_cases
 Cohort of ASD families (237 simplex, 189 mulitplex) recruited from the Hospital for Sick Children, McMaster Univ., Memorial Univ., and other sites
 427
 ASD
 
 
 348392
 1
 0
 1

Controls

Cohort ID
Author, Year
Descripton
Cohort Size
Diagnosis
Age
Gender
CNV Size
Deletion
Duplication
Total CNV's
 marshall_08_ASD_discovery_controls_1
 German PopGen project and entries from Database of Genomic Variants
 500
 Controls
 
 
 0
 0
 0
 0
 marshall_08_ASD_discovery_controls_2
 Non-disease controls from Ontario population
 1152
 Controls
 
 
 0
 0
 0
 0

Cases

Cohort ID
Geographical Ancestry
Discovery Method
Platform
Algorithm
Software
Validation Method
 chaudhry_17_ASD/ADHD/DD_discovery_cases
  French-Canadian/Italian descent
 aCGH
  OGT 4x180 K ISCA
 
 
 FISH
 marshall_08_ASD_discovery_cases
  90% European, 4.5% European-mixed, 4.5% Asian, 0.07% African
 Array SNP, karotyping
  Affymetrix 500K
 dChip, CNAG, GEMCA
 
 qPCR, qmPCR

Controls

Cohort ID
Geographical Ancestry
Discovery Method
Platform
Algorithm
Software
Validation Method
  marshall_08_ASD_discovery_controls_1
  European
  Array SNP, karotyping
  Affymetrix 500K
  dChip, CNAG, GEMCA
 
 
  marshall_08_ASD_discovery_controls_2
  European
  Array SNP, karotyping
  Affymetrix 500K
  dChip, CNAG, GEMCA
 
 

Cases

Patient ID
Author, Year
Age
Gender
Primary Diagnosis
Clinical Profile
Cognitive Profile
CNV Start
CNV End
CNV Size
Genome Build
Type Method
Validation
  chaudhry_17_ASD/ADHD/DD_discovery_cases-case1
 13.5 yrs.
 F
 ASD, ADHD, motor delay, and learning disability
 Case diagnosed with autism spectrum disorder (ASD) and attention deficit hyperactivity disorder (ADHD) at 10 years of age. Birth/neonatal history: fetal ultrasound at 33 weeks gestation showed agenesis of the corpus callosum with cerebral ventriculomegaly (confirmed by fetal MRI at 34 weeks gestation); born at 40 weeks via vaginal delivery, uneventful postnatal course (discharged at 48 hr of life); hospitalized at 3 months of age for chest infection and was found to have positional plagiocephaly with the left occiput being more prominent than the right. Developmental milestones: developmental difficulties noted in early childhood mainly involving the motor domain; fine motor delay; difficulty catching smaller objects and inability to pedal or balance on one foot noted at 3.5 years. Language and communication evaluation: normal speech and language skills on formal testing, but language skills broke down in social language situations; delayed play skills and preference for solitary play and one-to-one adult interaction. Motor and musculoskeletal evaluation: mild difficulties with gross motor skills and fine motor skills at 4 years of age (age-appropriate visual motor integration but motor planning difficulties); long fingers, subluxation of 1st metacarpophalangeal joint, bilateral 5th finger clinodactyly, left-sided sandal gap, partial 2nd and 3rd toe syndactyly, mild lordosis, and thoracic scoliosis convex to the right side noted at 13.5 years of age. Behavioral/psychiatric evaluation: referred to psychiatry for assessment due to increasing aggressive and impulsive behavior, especially towards younger siblings. Ophthalmological evaluation: initiation eye examination was normal; repeat eye examination following the finding of ZEB1 gene deletion confirmed diagnosis of posterior polymorphous corneal dystrophy (PPCD). Additional medical history: recurrent urinary tract infections and bilateral vesicoureteric reflux observed in second to third years of life; small umbilical hernia noted at 5 years of age. Dysmorphic features: puffy eyelids, epicanthic folds, and bulbous nose noted at 3 months of age; high forehead, frontal bossing, hypertelorism, prominent eyes, droopy eyelids, and squared-shaped nose noted at 3.5 years; high forehead, frontal bossing, facial asymmetry, mild ptosis, hypertelorism, widely spaced teeth, prognathism, and low-set ears noted at 5 years; high forehead, frontal bossing, coarse facial features, prominent supraorbital ridges, deep set eyes, droopy eyelids, hypertelorism, flat nasal bridge, anteverted nostrils, malar hypoplasia, full lips, and prominent square shaped chin noted at 13.5 years of age. Growth parameters: height of 109.5 cm (97th %ile), weight of 23 kg (> 97th %ile), and head circumference of 51.5 cm (50th-98th %ile) at 5 years of age; height of 160 cm (50th-75th %ile) and head circumference of 55.4 cm (+1.5 SD) at 13.5 years of age. Family history: born to 22-year-old primigravida mother of French Canadian origin and 28-year old father of Italian descent (parents were healthy and non-consanguineous).
 Case diagnosed with learning disability at 10 years of age. Assessment at age of 5 years demonstrated that this case appeared to be functioning at least 1 year behind chronological age.
 30533471
 32583222
  2049752
 GRCh38
 Deletion
 Yes
  marshall_08_ASD_discovery_cases-MM1086-004
 NA
 M
 ASD
 NA
 NA
 30927183
 31275574
  348392
 GRCh38
 Deletion
 Yes

Controls

No Control Data Available

Cases

Patient ID
Validation Description
Primary Disorder Inheritence
Inheritence
Family Profile
Disease Segregation
Gene Content
Altered Gene Expression
 chaudhry_17_ASD/ADHD/DD_discovery_cases-case1
 FISH
 
 De novo
 
 Likely segregated
 RN7SL63P,DDX10P1,RNA5SP309,SPTLC1P1,HMGB1P7,RPL34P19,RN7SL825P,RPS4XP11,RNU7-22P,PPIAP31,RPS24P13,RNU6-1244P,C1DP1,LYZL2,ZEB1-AS1,KIF5B,SVIL2P,ZNF438,ARHGAP12,EPC1,ZEB1,CCDC7
 
 marshall_08_ASD_discovery_cases-MM1086-004
 qPCR, qmPCR
 
 Unknown
 NA
 NA
 RNA5SP309,ZEB1-AS1,ZNF438
 

Controls

No Control Data Available
No Animal Model Data Available
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